FC924870

Overview
NameFC924870
Unique NameFC924870
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length623
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12981 contig Ccv1_Contig12981:135..757. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC924870 vs. ExPASy Swiss-Prot
Match: LPAT2_BRAOL (1-acyl-sn-glycerol-3-phosphate acyltransferase 2 OS=Brassica oleracea GN=LPAT2 PE=2 SV=1)

HSP 1 Score: 253.062 bits (645), Expect = 8.628e-67
Identity = 121/157 (77.07%), Postives = 132/157 (84.08%), Query Frame = 3
Query:  153 VPLGLLFFISGLVVNLIQAVCFVTIRPLSKNTYRRINRXXXXXXXXXXXXXXXXXAGVKIKLFVDRETYRLMGKEHALVVSNHKSDIDWLVGWVLAQRSGCLGSTLAVMKKSSKFLPVIGWSMWFSEYLFLERNWAKDESTLKSGLQRLRDYPQPFW 623
            VPLG+LFFISGLVVNL+QAVC+V IRPLSKNTYR+INR                 AGVKI++F D ET+  MGKEHALVV NH+SDIDWLVGW+LAQRSGCLGS LAVMKKSSKFLPVIGWSMWFSEYLFLERNWAKDESTLKSGLQRL D+P+PFW
Sbjct:   10 VPLGILFFISGLVVNLLQAVCYVLIRPLSKNTYRKINRVVAETLWLELVWIVDWWAGVKIQVFADDETFNRMGKEHALVVCNHRSDIDWLVGWILAQRSGCLGSALAVMKKSSKFLPVIGWSMWFSEYLFLERNWAKDESTLKSGLQRLNDFPRPFW 166          
BLAST of FC924870 vs. ExPASy Swiss-Prot
Match: LPAT2_ARATH (1-acyl-sn-glycerol-3-phosphate acyltransferase 2 OS=Arabidopsis thaliana GN=LPAT2 PE=1 SV=1)

HSP 1 Score: 251.906 bits (642), Expect = 1.922e-66
Identity = 121/157 (77.07%), Postives = 130/157 (82.80%), Query Frame = 3
Query:  153 VPLGLLFFISGLVVNLIQAVCFVTIRPLSKNTYRRINRXXXXXXXXXXXXXXXXXAGVKIKLFVDRETYRLMGKEHALVVSNHKSDIDWLVGWVLAQRSGCLGSTLAVMKKSSKFLPVIGWSMWFSEYLFLERNWAKDESTLKSGLQRLRDYPQPFW 623
            VPLGLLFFISGL VNL QAVC+V IRPLSKNTYR+INR                 AGVKI++F D ET+  MGKEHALVV NH+SDIDWLVGW+LAQRSGCLGS LAVMKKSSKFLPVIGWSMWFSEYLFLERNWAKDESTLKSGLQRL D+P+PFW
Sbjct:    9 VPLGLLFFISGLAVNLFQAVCYVLIRPLSKNTYRKINRVVAETLWLELVWIVDWWAGVKIQVFADNETFNRMGKEHALVVCNHRSDIDWLVGWILAQRSGCLGSALAVMKKSSKFLPVIGWSMWFSEYLFLERNWAKDESTLKSGLQRLSDFPRPFW 165          
BLAST of FC924870 vs. ExPASy Swiss-Prot
Match: LPAT2_BRANA (1-acyl-sn-glycerol-3-phosphate acyltransferase 2 OS=Brassica napus GN=LPAT2 PE=2 SV=1)

HSP 1 Score: 250.366 bits (638), Expect = 5.593e-66
Identity = 118/157 (75.16%), Postives = 132/157 (84.08%), Query Frame = 3
Query:  153 VPLGLLFFISGLVVNLIQAVCFVTIRPLSKNTYRRINRXXXXXXXXXXXXXXXXXAGVKIKLFVDRETYRLMGKEHALVVSNHKSDIDWLVGWVLAQRSGCLGSTLAVMKKSSKFLPVIGWSMWFSEYLFLERNWAKDESTLKSGLQRLRDYPQPFW 623
            VPLG+LFFISGLVVNL+QAVC+V +RP+SKNTYR+INR                 AGVKI++F D ET+  MGKEHALVV NH+SDIDWLVGW+LAQRSGCLGS LAVMKKSSKFLPVIGWSMWFSEYLFLERNWAKDESTL+SGLQRL D+P+PFW
Sbjct:    9 VPLGILFFISGLVVNLLQAVCYVLVRPMSKNTYRKINRVVAETLWLELVWIVDWWAGVKIQVFADDETFNRMGKEHALVVCNHRSDIDWLVGWILAQRSGCLGSALAVMKKSSKFLPVIGWSMWFSEYLFLERNWAKDESTLQSGLQRLNDFPRPFW 165          
BLAST of FC924870 vs. ExPASy Swiss-Prot
Match: LPAT_MAIZE (1-acyl-sn-glycerol-3-phosphate acyltransferase PLS1 OS=Zea mays GN=PLS1 PE=2 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 3.393e-63
Identity = 113/157 (71.97%), Postives = 129/157 (82.17%), Query Frame = 3
Query:  153 VPLGLLFFISGLVVNLIQAVCFVTIRPLSKNTYRRINRXXXXXXXXXXXXXXXXXAGVKIKLFVDRETYRLMGKEHALVVSNHKSDIDWLVGWVLAQRSGCLGSTLAVMKKSSKFLPVIGWSMWFSEYLFLERNWAKDESTLKSGLQRLRDYPQPFW 623
            +PLGLLF +SGL+VN IQAV FVTIRP SK+ YRRINR                 AGVK++L  D ETYR MGKEHAL++SNH+SDIDWL+GW+LAQRSGCLGSTLAVMKKSSKFLPVIGWSMWF+EYLFLER+WAKDE TLK GLQRL+D+P+PFW
Sbjct:   10 LPLGLLFLLSGLIVNAIQAVLFVTIRPFSKSFYRRINRFLAELLWLQLVWVVDWWAGVKVQLHADEETYRSMGKEHALIISNHRSDIDWLIGWILAQRSGCLGSTLAVMKKSSKFLPVIGWSMWFAEYLFLERSWAKDEKTLKWGLQRLKDFPRPFW 166          
BLAST of FC924870 vs. ExPASy Swiss-Prot
Match: LPAT3_ARATH (1-acyl-sn-glycerol-3-phosphate acyltransferase 3 OS=Arabidopsis thaliana GN=LPAT3 PE=2 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 7.576e-55
Identity = 94/157 (59.87%), Postives = 123/157 (78.34%), Query Frame = 3
Query:  153 VPLGLLFFISGLVVNLIQAVCFVTIRPLSKNTYRRINRXXXXXXXXXXXXXXXXXAGVKIKLFVDRETYRLMGKEHALVVSNHKSDIDWLVGWVLAQRSGCLGSTLAVMKKSSKFLPVIGWSMWFSEYLFLERNWAKDESTLKSGLQRLRDYPQPFW 623
            +P+G+LF ISGL+VN+IQ V F+ +RP S++ YRRIN+                 A +KI L+VD ET  L+GKEHALV+SNH+SDIDWL+GWV+AQR GCLGS+LA+MKK +K+LP+IGWSMWFS+Y+FLER+WAKDE+TLK+G +RL D+P  FW
Sbjct:   10 IPVGVLFLISGLIVNIIQLVFFIIVRPFSRSLYRRINKNVAELLWLQLIWLFDWWACIKINLYVDAETLELIGKEHALVLSNHRSDIDWLIGWVMAQRVGCLGSSLAIMKKEAKYLPIIGWSMWFSDYIFLERSWAKDENTLKAGFKRLEDFPMTFW 166          
BLAST of FC924870 vs. ExPASy Swiss-Prot
Match: PLCC_PONAB (1-acyl-sn-glycerol-3-phosphate acyltransferase gamma OS=Pongo abelii GN=AGPAT3 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 9.326e-29
Identity = 58/155 (37.42%), Postives = 91/155 (58.71%), Query Frame = 3
Query:  159 LGLLFFISGLVVNLIQAVCFVTIRPLSKNTYRRINRXXXXXXXXXXXXXXXXXAGVKIKLFVDRETYRLMGKEHALVVSNHKSDIDWLVGWVLAQRSGCLGSTLAVMKKSSKFLPVIGWSMWFSEYLFLERNWAKDESTLKSGLQRLRDYPQPFW 623
            +G +F +SGLV+N +Q +C + + P+SK  YRR+N                  +  +  LF D+ T    GKEHA+++ NH  +ID+L GW + +R G LGS+  + KK   ++P+IGW+ +F E +F +R W +D  T+  GL+RL DYP+  W
Sbjct:   17 VGFVFVVSGLVINFVQ-LCTLALWPVSKQLYRRLNCRLAYSLWSQLVMLLEWWSCTECTLFTDQATVERFGKEHAVIILNHNFEIDFLCGWTMCERFGVLGSSKVLAKKELLYVPLIGWTWYFLEIVFCKRKWEEDRDTVVEGLRRLSDYPEYMW 170          
BLAST of FC924870 vs. ExPASy Swiss-Prot
Match: PLCC_HUMAN (1-acyl-sn-glycerol-3-phosphate acyltransferase gamma OS=Homo sapiens GN=AGPAT3 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 9.326e-29
Identity = 58/155 (37.42%), Postives = 91/155 (58.71%), Query Frame = 3
Query:  159 LGLLFFISGLVVNLIQAVCFVTIRPLSKNTYRRINRXXXXXXXXXXXXXXXXXAGVKIKLFVDRETYRLMGKEHALVVSNHKSDIDWLVGWVLAQRSGCLGSTLAVMKKSSKFLPVIGWSMWFSEYLFLERNWAKDESTLKSGLQRLRDYPQPFW 623
            +G +F +SGLV+N +Q +C + + P+SK  YRR+N                  +  +  LF D+ T    GKEHA+++ NH  +ID+L GW + +R G LGS+  + KK   ++P+IGW+ +F E +F +R W +D  T+  GL+RL DYP+  W
Sbjct:   17 VGFVFVVSGLVINFVQ-LCTLALWPVSKQLYRRLNCRLAYSLWSQLVMLLEWWSCTECTLFTDQATVERFGKEHAVIILNHNFEIDFLCGWTMCERFGVLGSSKVLAKKELLYVPLIGWTWYFLEIVFCKRKWEEDRDTVVEGLRRLSDYPEYMW 170          
BLAST of FC924870 vs. ExPASy Swiss-Prot
Match: PLCC_MOUSE (1-acyl-sn-glycerol-3-phosphate acyltransferase gamma OS=Mus musculus GN=Agpat3 PE=1 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 5.117e-27
Identity = 57/155 (36.77%), Postives = 89/155 (57.42%), Query Frame = 3
Query:  159 LGLLFFISGLVVNLIQAVCFVTIRPLSKNTYRRINRXXXXXXXXXXXXXXXXXAGVKIKLFVDRETYRLMGKEHALVVSNHKSDIDWLVGWVLAQRSGCLGSTLAVMKKSSKFLPVIGWSMWFSEYLFLERNWAKDESTLKSGLQRLRDYPQPFW 623
            +G +F +SGL++N  Q +C + + P+SK+ YRRIN                  +  +  LF D+ T    GKEH +V+ NH  +ID+L GW + +R G LGS+  + K+    +P+IGW+ +F E +F +R W +D  T+  GL+RL DYP+  W
Sbjct:   17 IGFVFVVSGLIINFTQ-LCTLALWPISKHLYRRINCRLAYSLWSQLVMLLEWWSCTECTLFTDQATVDHFGKEHVVVILNHNFEIDFLCGWTMCERFGVLGSSKVLAKRELLCVPLIGWTWYFLEIVFCKRKWEEDRDTVIEGLRRLADYPEYMW 170          
BLAST of FC924870 vs. ExPASy Swiss-Prot
Match: PLCD_BOVIN (1-acyl-sn-glycerol-3-phosphate acyltransferase delta OS=Bos taurus GN=AGPAT4 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.332e-26
Identity = 55/152 (36.18%), Postives = 88/152 (57.89%), Query Frame = 3
Query:  168 LFFISGLVVNLIQAVCFVTIRPLSKNTYRRINRXXXXXXXXXXXXXXXXXAGVKIKLFVDRETYRLMGKEHALVVSNHKSDIDWLVGWVLAQRSGCLGSTLAVMKKSSKFLPVIGWSMWFSEYLFLERNWAKDESTLKSGLQRLRDYPQPFW 623
            +F +SGL++N IQ +C + + P++K  +R+IN                  +G +  ++ D   Y   GKE+A+VV NHK +ID+L GW LA+R G LG +  + KK   ++P+IGW  +F+E +F  R W +D  T+   L  LRDYP+ ++
Sbjct:   20 VFIVSGLIINTIQ-LCTLLLWPVNKQLFRKINCRLSYCVSSQLVMLLEWWSGTECVIYTDPRAYPKYGKENAIVVLNHKFEIDFLCGWSLAERFGVLGGSKVLAKKELAYVPIIGWMWYFTEMVFCTRKWEQDRKTVSESLLHLRDYPEKYF 170          
BLAST of FC924870 vs. ExPASy Swiss-Prot
Match: PLCD_PONAB (1-acyl-sn-glycerol-3-phosphate acyltransferase delta OS=Pongo abelii GN=AGPAT4 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.260e-25
Identity = 55/152 (36.18%), Postives = 87/152 (57.24%), Query Frame = 3
Query:  168 LFFISGLVVNLIQAVCFVTIRPLSKNTYRRINRXXXXXXXXXXXXXXXXXAGVKIKLFVDRETYRLMGKEHALVVSNHKSDIDWLVGWVLAQRSGCLGSTLAVMKKSSKFLPVIGWSMWFSEYLFLERNWAKDESTLKSGLQRLRDYPQPFW 623
            +F  SGL++N IQ    + + P++K  +R+IN                  +G +  +F D   Y   GKE+A+VV NHK +ID+L GW L++R G LG +  + KK   ++P+IGW  +F+E +F  R W +D  T+ + LQ LRDYP+ ++
Sbjct:   20 VFIASGLIINTIQLFTLL-LWPINKQLFRKINCRLSYCISSQLVMLLEWWSGTECTIFTDPRAYLKYGKENAIVVLNHKFEIDFLCGWSLSERFGLLGGSKVLAKKELAYVPIIGWMWYFTEMVFCSRKWEQDRKTVATSLQHLRDYPEKYF 170          
The following BLAST results are available for this feature:
BLAST of FC924870 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
LPAT2_BRAOL8.628e-6777.071-acyl-sn-glycerol-3-phosphate acyltransferase 2 O... [more]
LPAT2_ARATH1.922e-6677.071-acyl-sn-glycerol-3-phosphate acyltransferase 2 O... [more]
LPAT2_BRANA5.593e-6675.161-acyl-sn-glycerol-3-phosphate acyltransferase 2 O... [more]
LPAT_MAIZE3.393e-6371.971-acyl-sn-glycerol-3-phosphate acyltransferase PLS... [more]
LPAT3_ARATH7.576e-5559.871-acyl-sn-glycerol-3-phosphate acyltransferase 3 O... [more]
PLCC_PONAB9.326e-2937.421-acyl-sn-glycerol-3-phosphate acyltransferase gam... [more]
PLCC_HUMAN9.326e-2937.421-acyl-sn-glycerol-3-phosphate acyltransferase gam... [more]
PLCC_MOUSE5.117e-2736.771-acyl-sn-glycerol-3-phosphate acyltransferase gam... [more]
PLCD_BOVIN4.332e-2636.181-acyl-sn-glycerol-3-phosphate acyltransferase del... [more]
PLCD_PONAB1.260e-2536.181-acyl-sn-glycerol-3-phosphate acyltransferase del... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP6YM01FM1 TF Citrus clementina cDNA clone KN0AAP6YM01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924870 ID=FC924870; Name=FC924870; organism=Citrus clementina; type=EST; length=623bp
TTATTTAAAATCTCAGATTTATTATAATCTCTTCTTGTTTTGCAAAGCGA
ACCCTCATTCTCTCTCTACAAATCAGAATCACAACACAAAAAAGAAAAAA
AGAAAGGAAAAGAATAGCAGAGGCCATGGCGATAGCAGCGGCAGCTGTCA
TCGTCCCATTGGGCCTTCTCTTCTTCATTTCAGGCCTCGTTGTCAATCTC
ATTCAGGCAGTTTGCTTTGTGACTATTCGCCCTCTATCGAAGAACACGTA
CAGGAGAATCAATAGATGGGTAGCGGAATTGTTATGGCTGGAACTTGTAT
GGATAGTTGATTGGTGGGCTGGAGTTAAGATCAAACTTTTCGTAGACCGT
GAAACGTATCGATTAATGGGTAAAGAACATGCACTTGTTGTTTCCAATCA
CAAAAGTGACATTGACTGGCTTGTTGGGTGGGTTTTGGCTCAGCGGTCAG
GTTGTCTTGGTAGCACATTGGCCGTTATGAAGAAATCATCAAAATTTCTT
CCGGTCATAGGTTGGTCAATGTGGTTTTCTGAATATCTCTTTCTGGAAAG
AAACTGGGCAAAGGATGAGAGCACATTAAAGTCAGGTCTCCAACGTCTAA
GAGACTATCCTCAACCCTTTTGG
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