FC924898

Overview
NameFC924898
Unique NameFC924898
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length642
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC924898 vs. ExPASy Swiss-Prot
Match: ADF_VITVI (Actin-depolymerizing factor OS=Vitis vinifera PE=2 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 1.734e-57
Identity = 108/134 (80.60%), Postives = 117/134 (87.31%), Query Frame = 3
Query:    3 SGMGVADQS*TTFLELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYDDFTASLPENDCRYAVYDFDFVTSENCQKSKIFFIAWSPSVSRIRAKMLYATSKDRFTRELEGIHYEIQATDPTEMDLEVLRDRAN 404
            SGMGVAD S  TFLEL+RKKVHRYVIFKID          TGGPAES+D+F A+LPENDCRYAVYDFDFVTSENCQKSKIFFIAWSP  SRIRAKMLYATSK+RF REL+G+HYEIQATDPTEMDLEVLR+RA+
Sbjct:   10 SGMGVADHSKNTFLELKRKKVHRYVIFKIDEKKKEVVVEKTGGPAESFDEFAAALPENDCRYAVYDFDFVTSENCQKSKIFFIAWSPDSSRIRAKMLYATSKERFRRELDGVHYEIQATDPTEMDLEVLRERAH 143          
BLAST of FC924898 vs. ExPASy Swiss-Prot
Match: ADF6_ARATH (Actin-depolymerizing factor 6 OS=Arabidopsis thaliana GN=ADF6 PE=1 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 3.270e-56
Identity = 105/134 (78.36%), Postives = 115/134 (85.82%), Query Frame = 3
Query:    3 SGMGVADQS*TTFLELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYDDFTASLPENDCRYAVYDFDFVTSENCQKSKIFFIAWSPSVSRIRAKMLYATSKDRFTRELEGIHYEIQATDPTEMDLEVLRDRAN 404
            SGMGVAD+S TTFLELQRKK HRYV+FKID          TG P ESYDDF ASLP+NDCRYAVYDFDFVTSENCQKSKIFF AWSPS S IRAK+LY+TSKD+ +REL+GIHYEIQATDPTE+DLEVLR+RAN
Sbjct:   13 SGMGVADESKTTFLELQRKKTHRYVVFKIDESKKEVVVEKTGNPTESYDDFLASLPDNDCRYAVYDFDFVTSENCQKSKIFFFAWSPSTSGIRAKVLYSTSKDQLSRELQGIHYEIQATDPTEVDLEVLRERAN 146          
BLAST of FC924898 vs. ExPASy Swiss-Prot
Match: ADF11_ORYSJ (Actin-depolymerizing factor 11 OS=Oryza sativa subsp. japonica GN=ADF11 PE=2 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 8.336e-52
Identity = 97/134 (72.39%), Postives = 112/134 (83.58%), Query Frame = 3
Query:    3 SGMGVADQS*TTFLELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYDDFTASLPENDCRYAVYDFDFVTSENCQKSKIFFIAWSPSVSRIRAKMLYATSKDRFTRELEGIHYEIQATDPTEMDLEVLRDRAN 404
            SG+GVA +   TFLELQRKK HRYVIFKID          TG   ES+DDF  SLPE+DCRYA+YDFDFVT ENCQKSKIFF+AWSPSVSRIRAKMLYATSK+RF REL+G+HYEIQATDP+E+D+E+LR+RA+
Sbjct:   12 SGIGVAAECKQTFLELQRKKSHRYVIFKIDDKCKEVVVEKTGSSTESFDDFMDSLPESDCRYAIYDFDFVTEENCQKSKIFFVAWSPSVSRIRAKMLYATSKERFRRELDGVHYEIQATDPSELDIELLRERAH 145          
BLAST of FC924898 vs. ExPASy Swiss-Prot
Match: ADF2_ORYSJ (Actin-depolymerizing factor 2 OS=Oryza sativa subsp. japonica GN=ADF2 PE=2 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.331e-49
Identity = 98/134 (73.13%), Postives = 106/134 (79.10%), Query Frame = 3
Query:    3 SGMGVADQS*TTFLELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYDDFTASLPENDCRYAVYDFDFVTSENCQKSKIFFIAWSPSVSRIRAKMLYATSKDRFTRELEGIHYEIQATDPTEMDLEVLRDRAN 404
            SGMGVA     TFLELQ KK  RYVIFKI+          TG   ESYDDF ASLPENDCRYA+YDFDFVT EN QKSKIFFIAWSPS SRIRAKMLY+TSKDR  +EL+G HYEIQATDPTE+DLEVLR+RA+
Sbjct:   12 SGMGVAPDIRDTFLELQMKKAFRYVIFKIEEKQKQVVVEKTGATTESYDDFLASLPENDCRYALYDFDFVTGENVQKSKIFFIAWSPSTSRIRAKMLYSTSKDRIKQELDGFHYEIQATDPTEVDLEVLRERAH 145          
BLAST of FC924898 vs. ExPASy Swiss-Prot
Match: ADF10_ORYSJ (Actin-depolymerizing factor 10 OS=Oryza sativa subsp. japonica GN=ADF10 PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 4.007e-46
Identity = 87/130 (66.92%), Postives = 105/130 (80.77%), Query Frame = 3
Query:   15 VADQS*TTFLELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYDDFTASLPENDCRYAVYDFDFVTSENCQKSKIFFIAWSPSVSRIRAKMLYATSKDRFTRELEGIHYEIQATDPTEMDLEVLRDRAN 404
            V ++S + F EL+R+KVHRYVIFKID          TG P ESYDDFTASLP +DCRYAVYD DFV+ +NC+KSKIFFI+WSPSVSRIRAK +YA S+++F  EL+G+H+EIQATDP +MDLEVLR RAN
Sbjct:   20 VPEKSKSAFWELKRRKVHRYVIFKIDDRREEIVVEKTGAPGESYDDFTASLPADDCRYAVYDLDFVSDDNCRKSKIFFISWSPSVSRIRAKTIYAVSRNQFRHELDGVHFEIQATDPDDMDLEVLRGRAN 149          
BLAST of FC924898 vs. ExPASy Swiss-Prot
Match: ADF1_PETHY (Actin-depolymerizing factor 1 OS=Petunia hybrida GN=ADF1 PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.091e-43
Identity = 81/134 (60.45%), Postives = 102/134 (76.12%), Query Frame = 3
Query:    3 SGMGVADQS*TTFLELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYDDFTASLPENDCRYAVYDFDFVTSENCQKSKIFFIAWSPSVSRIRAKMLYATSKDRFTRELEGIHYEIQATDPTEMDLEVLRDRAN 404
            SGM V D     FLEL+ K+ HR++++KI+           G P ESY+DF ASLPEN+CRYAVYDFDFVT+ENCQKS+IFFIAW P  +R+R+KM+YA+SKDRF REL+GI  E+QA DPTEM L+V++ RAN
Sbjct:    6 SGMAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVVVEKIGEPTESYEDFAASLPENECRYAVYDFDFVTAENCQKSRIFFIAWCPDTARVRSKMIYASSKDRFKRELDGIQVELQACDPTEMGLDVIQSRAN 139          
BLAST of FC924898 vs. ExPASy Swiss-Prot
Match: ADF8_ARATH (Actin-depolymerizing factor 8 OS=Arabidopsis thaliana GN=ADF8 PE=2 SV=2)

HSP 1 Score: 175.637 bits (444), Expect = 1.861e-43
Identity = 79/134 (58.96%), Postives = 103/134 (76.87%), Query Frame = 3
Query:    3 SGMGVADQS*TTFLELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYDDFTASLPENDCRYAVYDFDFVTSENCQKSKIFFIAWSPSVSRIRAKMLYATSKDRFTRELEGIHYEIQATDPTEMDLEVLRDRAN 404
            SGM V D+    FLEL+ K+ +R+++FKID           G P E+YDDFT+S+P+++CRYAVYDFDF T +NCQKSKIFFIAWSP  SR+R+KMLYA+SKDRF RE+EGI  E+QATDP+EM L++++ R N
Sbjct:    6 SGMHVNDECKIKFLELKAKRTYRFIVFKIDEKAQQVQIEKLGNPEETYDDFTSSIPDDECRYAVYDFDFTTEDNCQKSKIFFIAWSPDTSRVRSKMLYASSKDRFKREMEGIQVELQATDPSEMSLDIIKGRLN 139          
BLAST of FC924898 vs. ExPASy Swiss-Prot
Match: ADF7_ORYSJ (Actin-depolymerizing factor 7 OS=Oryza sativa subsp. japonica GN=ADF7 PE=3 SV=2)

HSP 1 Score: 174.866 bits (442), Expect = 3.175e-43
Identity = 81/134 (60.45%), Postives = 102/134 (76.12%), Query Frame = 3
Query:    3 SGMGVADQS*TTFLELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYDDFTASLPENDCRYAVYDFDFVTSENCQKSKIFFIAWSPSVSRIRAKMLYATSKDRFTRELEGIHYEIQATDPTEMDLEVLRDRAN 404
            SGM V D+    FLEL+ K+ +R++I+KID           G P  +YDDF ASLP N+CRYA++D+DFVT ENCQKSKIFFIAWSP  SR+R+KM+YA+SKDRF REL+GI  E+QATDPTE+ L+V+R RAN
Sbjct:    6 SGMAVDDECKLKFLELKAKRTYRFIIYKIDEKKKMVVVEKVGEPVLNYDDFAASLPANECRYAIFDYDFVTEENCQKSKIFFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQVELQATDPTEVGLDVIRGRAN 139          
BLAST of FC924898 vs. ExPASy Swiss-Prot
Match: ADF10_ARATH (Actin-depolymerizing factor 10 OS=Arabidopsis thaliana GN=ADF10 PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 5.416e-43
Identity = 79/134 (58.96%), Postives = 103/134 (76.87%), Query Frame = 3
Query:    3 SGMGVADQS*TTFLELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYDDFTASLPENDCRYAVYDFDFVTSENCQKSKIFFIAWSPSVSRIRAKMLYATSKDRFTRELEGIHYEIQATDPTEMDLEVLRDRAN 404
            SGM V+D+    FLEL+ K+ +R+++FKID           G P E+Y+DFT S+PE++CRYAVYD+DF T ENCQKSKIFFIAWSP  SR+R+KMLYA+SKDRF REL+GI  E+QATDP+EM L++++ R N
Sbjct:    6 SGMHVSDECKLKFLELKAKRNYRFIVFKIDEKAQQVMIDKLGNPEETYEDFTRSIPEDECRYAVYDYDFTTPENCQKSKIFFIAWSPDTSRVRSKMLYASSKDRFKRELDGIQVELQATDPSEMSLDIIKGRVN 139          
BLAST of FC924898 vs. ExPASy Swiss-Prot
Match: ADF4_ARATH (Actin-depolymerizing factor 4 OS=Arabidopsis thaliana GN=ADF4 PE=2 SV=2)

HSP 1 Score: 173.711 bits (439), Expect = 7.073e-43
Identity = 79/134 (58.96%), Postives = 102/134 (76.12%), Query Frame = 3
Query:    3 SGMGVADQS*TTFLELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYDDFTASLPENDCRYAVYDFDFVTSENCQKSKIFFIAWSPSVSRIRAKMLYATSKDRFTRELEGIHYEIQATDPTEMDLEVLRDRAN 404
            SGM V D     FLEL+ K+ HR++++KI+           G P  +Y+DF ASLP ++CRYA+YDFDFVT+ENCQKSKIFFIAW P V+++R+KM+YA+SKDRF REL+GI  E+QATDPTEMDL+VL+ R N
Sbjct:    6 SGMAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVIVEKVGEPILTYEDFAASLPADECRYAIYDFDFVTAENCQKSKIFFIAWCPDVAKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMDLDVLKSRVN 139          
The following BLAST results are available for this feature:
BLAST of FC924898 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
ADF_VITVI1.734e-5780.60Actin-depolymerizing factor OS=Vitis vinifera PE=2... [more]
ADF6_ARATH3.270e-5678.36Actin-depolymerizing factor 6 OS=Arabidopsis thali... [more]
ADF11_ORYSJ8.336e-5272.39Actin-depolymerizing factor 11 OS=Oryza sativa sub... [more]
ADF2_ORYSJ1.331e-4973.13Actin-depolymerizing factor 2 OS=Oryza sativa subs... [more]
ADF10_ORYSJ4.007e-4666.92Actin-depolymerizing factor 10 OS=Oryza sativa sub... [more]
ADF1_PETHY1.091e-4360.45Actin-depolymerizing factor 1 OS=Petunia hybrida G... [more]
ADF8_ARATH1.861e-4358.96Actin-depolymerizing factor 8 OS=Arabidopsis thali... [more]
ADF7_ORYSJ3.175e-4360.45Actin-depolymerizing factor 7 OS=Oryza sativa subs... [more]
ADF10_ARATH5.416e-4358.96Actin-depolymerizing factor 10 OS=Arabidopsis thal... [more]
ADF4_ARATH7.073e-4358.96Actin-depolymerizing factor 4 OS=Arabidopsis thali... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP1YL10FM1 TF Citrus clementina cDNA clone KN0AAP1YL10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924898 ID=FC924898; Name=FC924898; organism=Citrus clementina; type=EST; length=642bp
CTTCTGGCATGGGTGTCGCTGATCAAAGCTAGACCACATTCCTTGAACTG
CAAAGGAAGAAGGTGCACCGCTATGTGATTTTCAAGATCGATGAGAAGAA
AAAAGAGGTTGTGGTCGAAAAAACTGGGGGCCCAGCTGAGAGCTATGATG
ATTTCACTGCTTCTTTGCCAGAGAATGATTGTCGATATGCAGTTTATGAC
TTTGACTTTGTGACTTCTGAGAACTGCCAGAAGAGCAAGATATTTTTTAT
TGCATGGTCTCCTTCTGTATCCAGGATCCGTGCCAAGATGCTGTATGCAA
CATCAAAGGATAGGTTCACAAGGGAGCTGGAGGGCATCCATTATGAGATC
CAGGCAACTGACCCCACTGAGATGGATCTTGAAGTCCTTAGGGACCGTGC
TAACTGAGCACTTAGAGAAACACCCAGGAGTGACCAAAAGAAACGCATTT
TCCTGCTTCAATTAGTTGCTGATTATGTGCACTATCTGTTACTGACACAA
CATACCCATATAACACCTGAGAAGCATCATGGCAATAAGGGAGCCCAAAA
TTCCCCTGTACTGGGTATCATACCACGAGCCCCTAATCAGCCTTCCCAGG
TGCCAATTATTTAATAGTTAAGCTCCTCGTGCCGAATTCCTG
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