FC924907

Overview
NameFC924907
Unique NameFC924907
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length594
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC924907 vs. ExPASy Swiss-Prot
Match: TRXH_RICCO (Thioredoxin H-type OS=Ricinus communis PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 4.374e-49
Identity = 91/110 (82.73%), Postives = 100/110 (90.91%), Query Frame = -1
Query:  205 AEENQVIGCHTVEAWTQQLEKGNEAKKLVVVDFTASWCGPCRFIAPVLAELAKKTPNVLFLKVDVDELKTVAEEWAVEAMPTFLFLKEGKLVDKVVGAKKEELQLTIEKH 534
            AEE QVIGCHTVEAW +QL+KGN+ K L+VVDFTASWCGPCRFIAP LAELAKK PNV FLKVDVDELKTVA EWAVE+MPTF+FLKEGK++DKVVGAKK+ELQ TI KH
Sbjct:    3 AEEGQVIGCHTVEAWNEQLQKGNDTKGLIVVDFTASWCGPCRFIAPFLAELAKKLPNVTFLKVDVDELKTVAHEWAVESMPTFMFLKEGKIMDKVVGAKKDELQQTIAKH 112          
BLAST of FC924907 vs. ExPASy Swiss-Prot
Match: TRXH1_ARATH (Thioredoxin H-type 1 OS=Arabidopsis thaliana GN=TRX1 PE=1 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 5.912e-46
Identity = 84/110 (76.36%), Postives = 97/110 (88.18%), Query Frame = -1
Query:  205 AEENQVIGCHTVEAWTQQLEKGNEAKKLVVVDFTASWCGPCRFIAPVLAELAKKTPNVLFLKVDVDELKTVAEEWAVEAMPTFLFLKEGKLVDKVVGAKKEELQLTIEKH 534
            +EE QVI CHTVE W +QL+K NE+K LVVVDFTASWCGPCRFIAP  A+LAKK PNVLFLKVD DELK+VA +WA++AMPTF+FLKEGK++DKVVGAKK+ELQ TI KH
Sbjct:    3 SEEGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKVDTDELKSVASDWAIQAMPTFMFLKEGKILDKVVGAKKDELQSTIAKH 112          
BLAST of FC924907 vs. ExPASy Swiss-Prot
Match: TRXH2_TOBAC (Thioredoxin H-type 2 OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 8.537e-45
Identity = 86/114 (75.44%), Postives = 98/114 (85.96%), Query Frame = -1
Query:  196 MAEENQVIGCHTVEAWTQQLEKGNEAKKLVVVDFTASWCGPCRFIAPVLAELAKKTPNVLFLKVDVDELKTVAEEWAVEAMPTFLFLKEGKLVDKVVGAKKEELQLTIEKHATS 537
            MAEE QVIG HTV+AW + L+KG + KKL+VVDFTASWCGPC+FIA   AELAKK P V FLKVDVDELK+VA +WAVEAMPTF+FLKEGK+VDKVVGAKK+ELQ TI KH +S
Sbjct:    1 MAEEGQVIGVHTVDAWNEHLQKGIDDKKLIVVDFTASWCGPCKFIASFYAELAKKMPTVTFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKDELQQTIAKHISS 114          
BLAST of FC924907 vs. ExPASy Swiss-Prot
Match: TRXH1_TOBAC (Thioredoxin H-type 1 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.456e-44
Identity = 83/111 (74.77%), Postives = 97/111 (87.39%), Query Frame = -1
Query:  202 AEENQVIGCHTVEAWTQQLEKGNEAKKLVVVDFTASWCGPCRFIAPVLAELAKKTPNVLFLKVDVDELKTVAEEWAVEAMPTFLFLKEGKLVDKVVGAKKEELQLTIEKHA 534
            +EE QV GCH VE W +  +KG E KKLVVVDFTASWCGPCRFIAP+LA++AKK P+V+FLKVDVDELKTV+ EW+VEAMPTF+F+K+GK VD+VVGAKKEELQ TI KHA
Sbjct:    9 SEEGQVFGCHKVEEWNEYFKKGVETKKLVVVDFTASWCGPCRFIAPILADIAKKMPHVIFLKVDVDELKTVSAEWSVEAMPTFVFIKDGKEVDRVVGAKKEELQQTIVKHA 119          
BLAST of FC924907 vs. ExPASy Swiss-Prot
Match: TRXH3_ARATH (Thioredoxin H-type 3 OS=Arabidopsis thaliana GN=TRX3 PE=1 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.194e-38
Identity = 74/115 (64.35%), Postives = 94/115 (81.74%), Query Frame = -1
Query:  193 MAEENQVIGCHTVEAWTQQLEKGNEAKKLVVVDFTASWCGPCRFIAPVLAELAKKTPNVLFLKVDVDELKTVAEEWAVEAMPTFLFLKEGKLVDKVVGAKKEELQLTIEKHATSV 537
            MA E +VI CHTVE WT++L+  NE+KKL+V+DFTA+WC PCRFIAPV A+LAKK  +V+F KVDVDEL TVAEE+ V+AMPTF+F+KEG++ + VVGA KEE+   +EKH T V
Sbjct:    1 MAAEGEVIACHTVEDWTEKLKAANESKKLIVIDFTATWCPPCRFIAPVFADLAKKHLDVVFFKVDVDELNTVAEEFKVQAMPTFIFMKEGEIKETVVGAAKEEIIANLEKHKTVV 115          
BLAST of FC924907 vs. ExPASy Swiss-Prot
Match: TRXH5_ARATH (Thioredoxin H-type 5 OS=Arabidopsis thaliana GN=TRX5 PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.724e-37
Identity = 68/111 (61.26%), Postives = 91/111 (81.98%), Query Frame = -1
Query:  205 MAEENQVIGCHTVEAWTQQLEKGNEAKKLVVVDFTASWCGPCRFIAPVLAELAKKTPNVLFLKVDVDELKTVAEEWAVEAMPTFLFLKEGKLVDKVVGAKKEELQLTIEKH 537
            MA E +VI CHT+E W ++++  NE+KKL+V+DFTASWC PCRFIAPV AE+AKK  NV+F K+DVDEL+ VA+E+ VEAMPTF+F+KEG ++D+VVGA K+E+   + KH
Sbjct:    1 MAGEGEVIACHTLEVWNEKVKDANESKKLIVIDFTASWCPPCRFIAPVFAEMAKKFTNVVFFKIDVDELQAVAQEFKVEAMPTFVFMKEGNIIDRVVGAAKDEINEKLMKH 111          
BLAST of FC924907 vs. ExPASy Swiss-Prot
Match: TRXH_WHEAT (Thioredoxin H-type OS=Triticum aestivum PE=1 SV=3)

HSP 1 Score: 150.599 bits (379), Expect = 5.546e-36
Identity = 72/122 (59.02%), Postives = 90/122 (73.77%), Query Frame = -1
Query:  202 SAYLPTKKTKMAEENQVIGCHTVEAWTQQLEKGNEAKKLVVVDFTASWCGPCRFIAPVLAELAKKTPNVLFLKVDVDELKTVAEEWAVEAMPTFLFLKEGKLVDKVVGAKKEELQLTIEKHA 567
            SA   T         +VI  H++E WT Q+E+ N AKKLVV+DFTASWCGPCR +AP+ A+LAKK P  +FLKVDVDELK +AE+++VEAMPTFLF+KEG + D+VVGA KEEL   +  HA
Sbjct:    4 SAATATATAAAVGAGEVISVHSLEQWTMQIEEANAAKKLVVIDFTASWCGPCRIMAPIFADLAKKFPAAVFLKVDVDELKPIAEQFSVEAMPTFLFMKEGDVKDRVVGAIKEELTTKVGLHA 125          
BLAST of FC924907 vs. ExPASy Swiss-Prot
Match: TRXH_ORYSJ (Thioredoxin H-type OS=Oryza sativa subsp. japonica GN=TRXH PE=1 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 5.546e-36
Identity = 72/110 (65.45%), Postives = 86/110 (78.18%), Query Frame = -1
Query:  205 AEENQVIGCHTVEAWTQQLEKGNEAKKLVVVDFTASWCGPCRFIAPVLAELAKKTPNVLFLKVDVDELKTVAEEWAVEAMPTFLFLKEGKLVDKVVGAKKEELQLTIEKH 534
            AEE  VI CH  + +  Q+ K  EA K+V++DFTASWCGPCRFIAPV AE AKK P  +FLKVDVDELK VAE++ VEAMPTFLF+K+G   DKVVGA+K++LQ TI KH
Sbjct:    3 AEEGVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTIVKH 112          
BLAST of FC924907 vs. ExPASy Swiss-Prot
Match: TRXH_ORYSI (Thioredoxin H-type OS=Oryza sativa subsp. indica GN=TRXH PE=1 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 5.546e-36
Identity = 72/110 (65.45%), Postives = 86/110 (78.18%), Query Frame = -1
Query:  205 AEENQVIGCHTVEAWTQQLEKGNEAKKLVVVDFTASWCGPCRFIAPVLAELAKKTPNVLFLKVDVDELKTVAEEWAVEAMPTFLFLKEGKLVDKVVGAKKEELQLTIEKH 534
            AEE  VI CH  + +  Q+ K  EA K+V++DFTASWCGPCRFIAPV AE AKK P  +FLKVDVDELK VAE++ VEAMPTFLF+K+G   DKVVGA+K++LQ TI KH
Sbjct:    3 AEEGVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTIVKH 112          
BLAST of FC924907 vs. ExPASy Swiss-Prot
Match: TRXH4_ARATH (Thioredoxin H-type 4 OS=Arabidopsis thaliana GN=TRX4 PE=2 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 1.236e-35
Identity = 70/111 (63.06%), Postives = 89/111 (80.18%), Query Frame = -1
Query:  205 AEENQVIGCHTVEAWTQQLEKGNEAKKLVVVDFTASWCGPCRFIAPVLAELAKK-TPNVLFLKVDVDELKTVAEEWAVEAMPTFLFLKEGKLVDKVVGAKKEELQLTIEKH 534
            AEE QVIGCHT + WT QL+K  E+ KL+V+DFTASWC PCR IAP+  +LAKK   + +F KVDVDEL++VA+E+ VEAMPTF+F+K G++VDK+VGA KE+LQ  I KH
Sbjct:    3 AEEGQVIGCHTNDVWTVQLDKAKESNKLIVIDFTASWCPPCRMIAPIFNDLAKKFMSSAIFFKVDVDELQSVAKEFGVEAMPTFVFIKAGEVVDKLVGANKEDLQAKIVKH 113          
The following BLAST results are available for this feature:
BLAST of FC924907 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 123
Match NameE-valueIdentityDescription
TRXH_RICCO4.374e-4982.73Thioredoxin H-type OS=Ricinus communis PE=3 SV=1[more]
TRXH1_ARATH5.912e-4676.36Thioredoxin H-type 1 OS=Arabidopsis thaliana GN=TR... [more]
TRXH2_TOBAC8.537e-4575.44Thioredoxin H-type 2 OS=Nicotiana tabacum PE=3 SV=... [more]
TRXH1_TOBAC1.456e-4474.77Thioredoxin H-type 1 OS=Nicotiana tabacum PE=2 SV=... [more]
TRXH3_ARATH1.194e-3864.35Thioredoxin H-type 3 OS=Arabidopsis thaliana GN=TR... [more]
TRXH5_ARATH1.724e-3761.26Thioredoxin H-type 5 OS=Arabidopsis thaliana GN=TR... [more]
TRXH_WHEAT5.546e-3659.02Thioredoxin H-type OS=Triticum aestivum PE=1 SV=3[more]
TRXH_ORYSJ5.546e-3665.45Thioredoxin H-type OS=Oryza sativa subsp. japonica... [more]
TRXH_ORYSI5.546e-3665.45Thioredoxin H-type OS=Oryza sativa subsp. indica G... [more]
TRXH4_ARATH1.236e-3563.06Thioredoxin H-type 4 OS=Arabidopsis thaliana GN=TR... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP1YL19FM1 TF Citrus clementina cDNA clone KN0AAP1YL19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924907 ID=FC924907; Name=FC924907; organism=Citrus clementina; type=EST; length=594bp
TTTTTTTTTTTACTTCACATTACTTAAATCCATAAATATTAAAAGGTAAA
ATGTAGCTGCATACAACAAGCACACATTTTAGACATCTACTACCAGAGTA
GTAGTAGCTCAGTTCTTATCATCAAATGAAAACTAGAAAACACTCATACA
GTACTGAGGTTCATATATTCTCCTCCATATTACATTTCATTCAACAGAAG
TGGCATGCTTTTCTATAGTCAGCTGCAACTCCTCTTTCTTTGCACCCACA
ACCTTGTCCACTAATTTGCCTTCTTTCAAGAACAAAAAGGTTGGCATTGC
CTCCACAGCCCATTCCTCAGCTACGGTCTTCAATTCATCCACATCAACCT
TCAGGAATAAGACATTAGGAGTCTTCTTAGCAAGCTCTGCCAGAACTGGG
GCAATGAAACGGCATGGTCCACACCATGAAGCCGTGAAATCCACCACCAC
CAGTTTCTTAGCCTCGTTTCCCTTCTCAAGTTGCTGAGTCCAAGCCTCAA
CAGTGTGGCAGCCAATCACTTGGTTCTCTTCAGCCATTTTTGTTTTCTTT
GTTGGTAAGTAAGCTGAGATTCGCAGGTAAAATGTTTCCTCGTG
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