FC924908

Overview
NameFC924908
Unique NameFC924908
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length609
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC924908 vs. ExPASy Swiss-Prot
Match: Y4139_ARATH (Uncharacterized aarF domain-containing protein kinase At4g31390, chloroplastic OS=Arabidopsis thaliana GN=At4g31390 PE=1 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 1.485e-55
Identity = 120/204 (58.82%), Postives = 145/204 (71.08%), Query Frame = 1
Query:   49 LINPNCINSLVFSTNKHRQTNKCRNVFSTSKESSFRLSTAPQ--RSERFST------SISASDASVNGVTTTPAD---------KRSLELVKSSKAMEQLDIERGVCVPFRKYTPETVRNKVLESRGAVISLMSRGVEIVWSLGLYWSNLTYDCLVGRDKEVVPDRARQLRNLLCNLGPSFIKAGHVLANRPDIVRQDYMNELC 609
            L+NPN      FS N+ R+  +  +     +++  R   A +  RS  FS       S++A+   V G  +T A          +R + + KSS A+EQLDIERGVCVPFRKY+PETVR+KVLESRGAV+SL+SRGVEIVW+LGLYWS LTYD LVGRD+EVVP RARQLRNLLCNLGPSFIKAG VLANRPDI+R+DYMNELC
Sbjct:    9 LLNPN------FSLNQRRR--RINHAVLNRRDALLRSLNAVELRRSRTFSAVRTSNFSVTAAATDVGGRNSTDASVMTTAMSGVERGVRVGKSSSALEQLDIERGVCVPFRKYSPETVRSKVLESRGAVVSLVSRGVEIVWTLGLYWSTLTYDFLVGRDEEVVPFRARQLRNLLCNLGPSFIKAGQVLANRPDIIREDYMNELC 204          
BLAST of FC924908 vs. ExPASy Swiss-Prot
Match: Y1919_SYNY3 (Uncharacterized protein slr1919 OS=Synechocystis sp. (strain PCC 6803) GN=slr1919 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.000e-11
Identity = 35/93 (37.63%), Postives = 53/93 (56.99%), Query Frame = 1
Query:  328 RKYTPETVRNKVLESRGAVISLMSRGVEIVWSLGLYWSNLTYDCLVGRDKEVVPDRARQLRNLLCNLGPSFIKAGHVLANRPDIVRQDYMNEL 606
            R+Y  + + N     R     ++ R +E+VWS G + + L +D   G+ +     RA  LR LL  LGP+FIK G  L+ RPD+VR+D++ EL
Sbjct:   17 RRYNAQAIANYY---RRRPWKVLWRALEVVWSFGFFLTCLLWDQWTGQVEYYKRQRAEDLRELLTKLGPTFIKVGQALSTRPDLVRRDFLEEL 106          
The following BLAST results are available for this feature:
BLAST of FC924908 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
Y4139_ARATH1.485e-5558.82Uncharacterized aarF domain-containing protein kin... [more]
Y1919_SYNY35.000e-1137.63Uncharacterized protein slr1919 OS=Synechocystis s... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP1YL23FM1 TF Citrus clementina cDNA clone KN0AAP1YL23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924908 ID=FC924908; Name=FC924908; organism=Citrus clementina; type=EST; length=609bp
CGTTTCTCACCAAAATCACTCGCTCGCTCCGTCTTATCAACCATGGATTT
GATTAATCCGAATTGCATAAACTCACTCGTTTTCTCTACAAACAAGCATC
GCCAAACGAACAAGTGCAGAAATGTATTTTCCACCTCCAAGGAATCTTCG
TTTCGGTTATCAACGGCGCCACAGAGAAGCGAGAGATTCTCAACTTCAAT
CTCGGCGAGTGATGCTTCAGTTAACGGTGTAACGACGACGCCAGCGGATA
AGAGATCGTTGGAATTAGTGAAATCCAGTAAAGCGATGGAGCAATTAGAC
ATCGAACGCGGCGTTTGCGTGCCGTTTCGCAAGTACACGCCTGAAACAGT
GAGGAACAAGGTATTGGAATCTAGAGGGGCTGTAATTTCTCTAATGTCAC
GTGGAGTGGAGATAGTATGGAGTTTGGGATTGTATTGGTCTAATTTGACG
TATGATTGTTTGGTTGGAAGAGACAAAGAGGTTGTTCCTGATCGTGCTCG
CCAACTTCGGAATCTCTTGTGTAATTTGGGGCCTTCCTTTATCAAAGCTG
GGCATGTGCTTGCGAACAGGCCTGATATTGTAAGACAAGATTATATGAAT
GAACTCTGC
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