FC924917

Overview
NameFC924917
Unique NameFC924917
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length612
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11964 contig Ccv1_Contig11964:101..712. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC924917 vs. ExPASy Swiss-Prot
Match: PSAG_ARATH (Photosystem I reaction center subunit V, chloroplastic OS=Arabidopsis thaliana GN=PSAG PE=1 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 4.596e-57
Identity = 111/153 (72.55%), Postives = 130/153 (84.97%), Query Frame = 1
Query:   64 ASSSLFTPSTITVRKHQISPSTISFQGLRPLNTRAKTS-LPKLATSAKRNSFGGIKAELSTPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDP 519
            ++S+L +P+T +      +P++ISF GLRPL     +S LPKL+T+ +++S   ++AELS  +VISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNG THFEAGD RAKEYVSLLKSNDP+GFNIVDVLAWGSIGHIVAYYILATSSNGYDP
Sbjct:    4 SASALLSPTTFSTAISHKNPNSISFHGLRPLRLGGSSSALPKLSTTGRKSSSAVVRAELSPSIVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGKTHFEAGDDRAKEYVSLLKSNDPIGFNIVDVLAWGSIGHIVAYYILATSSNGYDP 156          
BLAST of FC924917 vs. ExPASy Swiss-Prot
Match: PSAG_SPIOL (Photosystem I reaction center subunit V, chloroplastic OS=Spinacia oleracea GN=PSAG PE=1 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 1.935e-47
Identity = 101/131 (77.10%), Postives = 110/131 (83.97%), Query Frame = 1
Query:  133 SFQGLRPL--NTRAKTSLPKLATSAKRNSFGGIKAELSTPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDP 519
            SF GLRPL  N  +  S   L+ S+ R S    +AELS  LVISLSTGLSLFLGRFVFFNFQREN+AKQ +PEQNG++HFEAGD RAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILAT+SNGYDP
Sbjct:   36 SFSGLRPLKLNISSNNSSSSLSMSSARRSMT-CRAELSPSLVISLSTGLSLFLGRFVFFNFQRENMAKQ-VPEQNGMSHFEAGDTRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATASNGYDP 164          
BLAST of FC924917 vs. ExPASy Swiss-Prot
Match: PSAG_HORVU (Photosystem I reaction center subunit V, chloroplastic OS=Hordeum vulgare GN=PSAG PE=1 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 6.030e-41
Identity = 89/135 (65.93%), Postives = 105/135 (77.78%), Query Frame = 1
Query:  115 ISPSTISFQGLRPLNTRAKTSLPKLATSAKRNSFGGIKAELSTPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDP 519
            +SP  ++   L P + RA  S   ++  A+R+     +A L   +VISLSTGLSL +GRFVFFNFQRENVAKQ +PEQNG THFEAGD RAKE+  +LKSNDPVGFN+VDVLAWGSIGHIVAYYILAT+SNGYDP
Sbjct:    9 LSPPAVAGLRLAP-SPRAAASFRGVSPPARRSV--AARAALEPSVVISLSTGLSLVMGRFVFFNFQRENVAKQ-VPEQNGKTHFEAGDERAKEFAGILKSNDPVGFNLVDVLAWGSIGHIVAYYILATTSNGYDP 139          
BLAST of FC924917 vs. ExPASy Swiss-Prot
Match: PSAG_TORRU (Photosystem I reaction center subunit V, chloroplastic OS=Tortula ruralis GN=PSAG PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.069e-21
Identity = 49/93 (52.69%), Postives = 65/93 (69.89%), Query Frame = 1
Query:  238 STPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYD 516
            +T  +IS ST   L LGRFVF  FQR  V++ GLPEQNGV          + + S+LK+NDP GF +VDVLAWG++GH V ++ILAT++NGY+
Sbjct:   17 NTSFIISASTAALLALGRFVFLPFQRSMVSRHGLPEQNGVPTTRRVTAVRRRWWSMLKTNDPAGFTLVDVLAWGALGHAVGFFILATATNGYN 109          
BLAST of FC924917 vs. ExPASy Swiss-Prot
Match: PSAG_PEA (Photosystem I reaction center subunit V (Fragment) OS=Pisum sativum GN=PSAG PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.021e-12
Identity = 36/39 (92.31%), Postives = 37/39 (94.87%), Query Frame = 1
Query:  232 ELSTPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQ 348
            EL+  LVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQ
Sbjct:    1 ELNPSLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQ 39          
BLAST of FC924917 vs. ExPASy Swiss-Prot
Match: PSAG_CHLRE (Photosystem I reaction center subunit V, chloroplastic OS=Chlamydomonas reinhardtii GN=PSAG PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.003e-11
Identity = 39/95 (41.05%), Postives = 56/95 (58.95%), Query Frame = 1
Query:  226 KAELSTPLVISLSTGLSLFLGRFVFFNFQRE--NVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATSS 504
            KA L   +VIS ST   L +GRFVF  +QR   N      P+  G T+F+  D++     ++  +NDP GFNI+DV  WG++GH V + +LA +S
Sbjct:   29 KAALDPQIVISGSTAAFLAIGRFVFLGYQRREANFDSTVGPKTTGATYFD--DLQKNS--TIFATNDPAGFNIIDVAGWGALGHAVGFAVLAINS 119          
The following BLAST results are available for this feature:
BLAST of FC924917 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
PSAG_ARATH4.596e-5772.55Photosystem I reaction center subunit V, chloropla... [more]
PSAG_SPIOL1.935e-4777.10Photosystem I reaction center subunit V, chloropla... [more]
PSAG_HORVU6.030e-4165.93Photosystem I reaction center subunit V, chloropla... [more]
PSAG_TORRU1.069e-2152.69Photosystem I reaction center subunit V, chloropla... [more]
PSAG_PEA2.021e-1292.31Photosystem I reaction center subunit V (Fragment)... [more]
PSAG_CHLRE1.003e-1141.05Photosystem I reaction center subunit V, chloropla... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP6YN11FM1 TF Citrus clementina cDNA clone KN0AAP6YN11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924917 ID=FC924917; Name=FC924917; organism=Citrus clementina; type=EST; length=612bp
CATCAAGGCATCCACCAGAACACAAAAAAGAAGGAAAAAGAGGGGGAAAA
AAGAAAAATGGCAGCCTCATCCTCCTTGTTCACACCCTCCACCATCACCG
TCCGAAAACACCAAATTTCACCCTCCACCATCTCATTCCAAGGCCTAAGA
CCCCTCAACACCAGGGCCAAAACCTCCCTCCCCAAGCTCGCCACCTCCGC
CAAAAGAAACAGCTTCGGCGGCATTAAAGCTGAGCTGAGCACACCACTTG
TCATCAGCCTCAGCACTGGCCTCTCCTTGTTCTTGGGCAGGTTCGTCTTC
TTCAACTTCCAAAGAGAGAACGTGGCCAAACAAGGCTTGCCCGAGCAGAA
TGGAGTCACCCACTTTGAAGCCGGTGATGTTCGTGCCAAGGAATATGTTA
GCCTCCTCAAATCCAACGACCCAGTTGGCTTTAACATTGTTGATGTTCTT
GCTTGGGGTTCCATTGGCCATATTGTCGCTTACTACATCTTGGCCACCTC
CAGCAACGGCTATGATCCCAAGTTCTTTGGTTGATTTTGTTATTTGTACT
GTCTCTCTTTGTCTCTTTTAATTTCTTAATTTCTCCAGTGTTGCGCTTTG
TATAGTTAAATA
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