FC924920

Overview
NameFC924920
Unique NameFC924920
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9467 contig Ccv1_Contig9467:31..742. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC924920 vs. ExPASy Swiss-Prot
Match: XTH9_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 9 OS=Arabidopsis thaliana GN=XTH9 PE=2 SV=2)

HSP 1 Score: 316.62 bits (810), Expect = 8.193e-86
Identity = 152/200 (76.00%), Postives = 171/200 (85.50%), Query Frame = 3
Query:   87 MVKMSLIFSLFVGLLMV----GLVSSAKFDDLYQTSWAFNHVQYDGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGG 674
            MV M L   + + +++V      VS AKFD+LY++SWA +H   +G+  KL LDNYSGAGF S+SKYLFGKVSIQIKLV GDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPY+VQTN+YVNGVGNREQRL+LWFDPT EFHTYS+LW++R VVF+VDETPIRV  NLE KGIPF KDQAMGVYSSIWNADDWATQGG
Sbjct:    1 MVGMDLFKCVMMIMVLVVSCGEAVSGAKFDELYRSSWAMDHCVNEGEVTKLKLDNYSGAGFESRSKYLFGKVSIQIKLVEGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYIVQTNIYVNGVGNREQRLNLWFDPTTEFHTYSILWSKRSVVFMVDETPIRVQKNLEEKGIPFAKDQAMGVYSSIWNADDWATQGG 200          
BLAST of FC924920 vs. ExPASy Swiss-Prot
Match: XTH16_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 16 OS=Arabidopsis thaliana GN=XTH16 PE=2 SV=2)

HSP 1 Score: 231.491 bits (589), Expect = 6.796e-61
Identity = 104/198 (52.53%), Postives = 144/198 (72.73%), Query Frame = 3
Query:   87 MVKMSLIFSLFVGLLMVGLVSSAKFDDLYQTSWAFNH--VQYDGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGG 674
            ++  +++ +L V + M G   S  F++ +  +W  +   +   G  L L+LD  SG+GF SK +YLFG++ +Q+KLV G+SAGTVTA+Y+SS+GP H+E DFEFLGN TG+PY++ TNV+  G GNREQ+  LWFDPTK FHTYSL+W  + ++F+VD  PIRV  N E  G+PFPK+Q M +YSS+WNADDWAT+GG
Sbjct:    4 ILNRTVLMTLLV-VTMAGTAFSGSFNEEFDLTWGEHRGKIFSGGKMLSLSLDRVSGSGFKSKKEYLFGRIDMQLKLVAGNSAGTVTAYYLSSEGPTHDEIDFEFLGNETGKPYVLHTNVFAQGKGNREQQFYLWFDPTKNFHTYSLVWRPQHIIFMVDNVPIRVFNNAEQLGVPFPKNQPMKIYSSLWNADDWATRGG 200          

HSP 2 Score: 23.8682 bits (50), Expect = 6.796e-61
Identity = 9/14 (64.29%), Postives = 9/14 (64.29%), Query Frame = 1
Query:  667 RGGKVKTDWKPCTF 708
            RGG VKTDW    F
Sbjct:  198 RGGLVKTDWSKAPF 211          
BLAST of FC924920 vs. ExPASy Swiss-Prot
Match: XTH_SOYBN (Probable xyloglucan endotransglucosylase/hydrolase (Fragment) OS=Glycine max GN=XTH PE=2 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 9.648e-60
Identity = 104/175 (59.43%), Postives = 132/175 (75.43%), Query Frame = 3
Query:  156 KFDDLYQTSWAFNHVQY--DGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGG 674
            +F   Y  +WAF+H++Y   G  ++L+LD Y+G GF SK  YLFG  S+ IK+V GDSAGTVTAFY+SS    H+E DFEFLGN TG+PY++QTNV+  G G+REQR+ LWFDPTKE+H YS+LWN  Q+VF VDE PIRV  N +  G+ FP DQ M +Y+S+WNADDWAT+GG
Sbjct:   32 QFGRNYVPTWAFDHIKYFNGGSDIQLHLDKYTGTGFQSKGSYLFGHFSMYIKMVPGDSAGTVTAFYLSSQNAEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKEYHRYSILWNLYQIVFFVDEVPIRVFKNSKDLGVKFPFDQPMKIYNSLWNADDWATRGG 206          

HSP 2 Score: 21.557 bits (44), Expect = 9.648e-60
Identity = 8/14 (57.14%), Postives = 8/14 (57.14%), Query Frame = 1
Query:  667 RGGKVKTDWKPCTF 708
            RGG  KTDW    F
Sbjct:  204 RGGLEKTDWSKAPF 217          
BLAST of FC924920 vs. ExPASy Swiss-Prot
Match: BRU1_SOYBN (Brassinosteroid-regulated protein BRU1 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 2.139e-59
Identity = 103/195 (52.82%), Postives = 139/195 (71.28%), Query Frame = 3
Query:  117 FVGLLMVGLVSSA-------KFDDLYQTSWAFNHVQY--DGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGG 674
            F  L++VG+V S         F   +  +W  +  +    G  L L+LD  SG+GF SK +YLFG++ +Q+KLV G+SAGTVTA+Y+SS GP H+E DFEFLGN +G+PY++ TN++  G GNREQ+  LWFDPT+ FHTYS++W  + ++FLVD TPIRV  N E  G+PFPK+Q M +YSS+WNADDWAT+GG
Sbjct:   11 FYVLMLVGIVVSTMVATCAGSFYQDFDLTWGGDRAKIFNGGQLLSLSLDKVSGSGFKSKKEYLFGRIDMQLKLVAGNSAGTVTAYYLSSQGPTHDEIDFEFLGNLSGDPYILHTNIFTQGKGNREQQFYLWFDPTRNFHTYSIIWKPQHIIFLVDNTPIRVFKNAEPLGVPFPKNQPMRIYSSLWNADDWATRGG 205          

HSP 2 Score: 23.8682 bits (50), Expect = 2.139e-59
Identity = 9/14 (64.29%), Postives = 9/14 (64.29%), Query Frame = 1
Query:  667 RGGKVKTDWKPCTF 708
            RGG VKTDW    F
Sbjct:  203 RGGLVKTDWSKAPF 216          
BLAST of FC924920 vs. ExPASy Swiss-Prot
Match: XTH5_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 5 OS=Arabidopsis thaliana GN=XTH5 PE=2 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 2.934e-59
Identity = 101/170 (59.41%), Postives = 130/170 (76.47%), Query Frame = 3
Query:  171 YQTSWAFNHVQY--DGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGG 674
            Y  +WAF+H++Y   G  + L LD Y+G GF SK  YLFG  S+ IK+V GDSAGTVTAFY+SS    H+E DFEFLGN TG+PY++QTNV+  G GNREQR++LWFDP+K++H+YS+LWN  Q+VF VD+ PIRV  N +  G+ FP +Q M +YSS+WNADDWAT+GG
Sbjct:   36 YFPTWAFDHIKYLNGGSEVHLVLDKYTGTGFQSKGSYLFGHFSMHIKMVAGDSAGTVTAFYLSSQNSEHDEIDFEFLGNRTGQPYILQTNVFTGGAGNREQRINLWFDPSKDYHSYSVLWNMYQIVFFVDDVPIRVFKNSKDVGVKFPFNQPMKIYSSLWNADDWATRGG 205          
BLAST of FC924920 vs. ExPASy Swiss-Prot
Match: XTHB_PHAAN (Probable xyloglucan endotransglucosylase/hydrolase protein B OS=Phaseolus angularis GN=XTHB PE=2 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 1.786e-58
Identity = 109/200 (54.50%), Postives = 140/200 (70.00%), Query Frame = 3
Query:  114 LFVGLLMVGLVSSA-----------KFDDLYQTSWAFNHVQY--DGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGG 674
            L + L++V L SSA            F   Y  +WAF+H++Y   G  ++L+LD Y+G GF +K  YLFG  S+ IK+V GDSAGTVTAF +SS    H+E DFEFLGN TG+PY++QTNV+  G G+REQR+ LWFDPTK +H YS+LWN  Q+VFLVD  PIRV  NL+  G+ FP +Q M VY+S+WNADDWAT+GG
Sbjct:    6 LILCLVLVSLASSALCAAPRRPVDVPFGRNYIPTWAFDHIKYFNGGSEIQLHLDKYTGTGFQTKGSYLFGHFSMNIKMVPGDSAGTVTAFCLSSQNAEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKAYHRYSVLWNMYQIVFLVDNIPIRVFKNLKELGVKFPFNQPMKVYNSLWNADDWATRGG 205          

HSP 2 Score: 21.557 bits (44), Expect = 1.786e-58
Identity = 8/14 (57.14%), Postives = 8/14 (57.14%), Query Frame = 1
Query:  667 RGGKVKTDWKPCTF 708
            RGG  KTDW    F
Sbjct:  203 RGGLEKTDWSKAPF 216          
BLAST of FC924920 vs. ExPASy Swiss-Prot
Match: XTH15_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 15 OS=Arabidopsis thaliana GN=XTH15 PE=1 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 2.328e-58
Identity = 104/197 (52.79%), Postives = 140/197 (71.07%), Query Frame = 3
Query:   99 SLIFSLFVGLLMVGLVSSA---KFDDLYQTSWAFNH--VQYDGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGG 674
            S + ++   +L+V L  SA    F D +  +W  +   +   G+ L L+LD  SG+GF SK +YLFG++ +Q+KLV G+SAGTVTA+Y+SS G  H+E DFEFLGN TG+PY++ TNV+  G G+REQ+  LWFDPTK FHTYS++W  + ++FLVD  PIRV  N E  G+PFPK Q M +YSS+WNADDWAT+GG
Sbjct:    5 SSLTTIVATVLLVTLFGSAYASNFFDEFDLTWGDHRGKIFNGGNMLSLSLDQVSGSGFKSKKEYLFGRIDMQLKLVAGNSAGTVTAYYLSSQGATHDEIDFEFLGNETGKPYVLHTNVFAQGKGDREQQFYLWFDPTKNFHTYSIVWRPQHIIFLVDNLPIRVFNNAEKLGVPFPKSQPMRIYSSLWNADDWATRGG 201          

HSP 2 Score: 23.8682 bits (50), Expect = 2.328e-58
Identity = 9/14 (64.29%), Postives = 9/14 (64.29%), Query Frame = 1
Query:  667 RGGKVKTDWKPCTF 708
            RGG VKTDW    F
Sbjct:  199 RGGLVKTDWSKAPF 212          
BLAST of FC924920 vs. ExPASy Swiss-Prot
Match: XTHA_PHAAN (Xyloglucan endotransglucosylase/hydrolase protein A OS=Phaseolus angularis GN=XTHA PE=1 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.143e-57
Identity = 106/201 (52.74%), Postives = 140/201 (69.65%), Query Frame = 3
Query:  111 SLFVGLLMVGLVSSA-----------KFDDLYQTSWAFNHVQY--DGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGG 674
            SL+  L+++ L S++            F   Y  +WAF+H++Y   G  ++L+LD Y+G GF SK  YLFG  S+ IKLV GDSAGTVTAFY+SS    H+E DFEFLGN TG+PY++QTNV+  G G+REQR+ LWFDPT ++H YS+LWN  Q+VF VD+ PIRV  N    G+ FP +Q M +Y+S+WNADDWAT+GG
Sbjct:    4 SLWTCLILLSLASASFAANPRTPIDVPFGRNYVPTWAFDHIKYLNGGSEIQLHLDKYTGTGFQSKGSYLFGHFSMYIKLVPGDSAGTVTAFYLSSTNAEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTTQYHRYSVLWNMYQIVFYVDDYPIRVFKNSNDLGVKFPFNQPMKIYNSLWNADDWATRGG 204          

HSP 2 Score: 21.557 bits (44), Expect = 1.143e-57
Identity = 8/14 (57.14%), Postives = 8/14 (57.14%), Query Frame = 1
Query:  667 RGGKVKTDWKPCTF 708
            RGG  KTDW    F
Sbjct:  202 RGGLEKTDWSKAPF 215          
BLAST of FC924920 vs. ExPASy Swiss-Prot
Match: XTH_WHEAT (Probable xyloglucan endotransglucosylase/hydrolase OS=Triticum aestivum GN=XTH PE=2 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 1.143e-57
Identity = 100/175 (57.14%), Postives = 131/175 (74.86%), Query Frame = 3
Query:  159 FDDLYQTSWAFNHVQY--DGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGGK 677
            FD  Y  +WA +H+ Y   G  ++L+LD  +G GF ++  YLFG  S+ IKLVGGDSAGTVTAFY+SS    H+E DFEFLGN TG+PY++QTNV+  G G+REQR+ LWFDPTK++H+YS+LWN   + F VD+TPIRV  N +  G+ +P DQ M +YSS+WNADDWAT+GG+
Sbjct:   32 FDKNYVPTWAQDHIHYVNGGREVQLSLDKTTGTGFQTRGSYLFGHFSMHIKLVGGDSAGTVTAFYLSSQNSEHDEIDFEFLGNRTGQPYILQTNVFSGGKGDREQRIYLWFDPTKDYHSYSVLWNLYMIAFFVDDTPIRVFKNSKDLGVRYPFDQPMKLYSSLWNADDWATRGGR 206          

HSP 2 Score: 23.0978 bits (48), Expect = 1.143e-57
Identity = 8/14 (57.14%), Postives = 9/14 (64.29%), Query Frame = 1
Query:  667 RGGKVKTDWKPCTF 708
            RGG+ KTDW    F
Sbjct:  203 RGGREKTDWSKAPF 216          
BLAST of FC924920 vs. ExPASy Swiss-Prot
Match: XTH7_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 7 OS=Arabidopsis thaliana GN=XTH7 PE=2 SV=2)

HSP 1 Score: 221.861 bits (564), Expect = 2.747e-57
Identity = 107/201 (53.23%), Postives = 147/201 (73.13%), Query Frame = 3
Query:   81 SSMVKMSLIFSLFVGLLMVGLVSSAKFDDLYQTSWAFNHV-QYDGD-TLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPN-HNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGG 674
            S  V  +L   LF  L    +   AKF+D ++ +W+  H+ Q DG   ++L LD  SG GFASK +YLFG+VS++IKL+ GDSAGTVTAFYM+SD  +  +E DFEFLGN +G+PY VQTNV+ +G G+REQR++LWFDP+++FH Y++ WN  ++VF VD  PIRV+ N E + +P+P+ Q MGVYS++W ADDWAT+GG
Sbjct:    8 SRNVFYTLSLCLFAALYQPVMSRPAKFEDDFRIAWSDTHITQIDGGRAIQLKLDPSSGCGFASKKQYLFGRVSMKIKLIPGDSAGTVTAFYMNSDTDSVRDELDFEFLGNRSGQPYTVQTNVFAHGKGDREQRVNLWFDPSRDFHEYAISWNHLRIVFYVDNVPIRVYKNNEARKVPYPRFQPMGVYSTLWEADDWATRGG 208          
The following BLAST results are available for this feature:
BLAST of FC924920 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
XTH9_ARATH8.193e-8676.00Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH16_ARATH6.796e-6152.53Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH_SOYBN9.648e-6059.43Probable xyloglucan endotransglucosylase/hydrolase... [more]
BRU1_SOYBN2.139e-5952.82Brassinosteroid-regulated protein BRU1 OS=Glycine ... [more]
XTH5_ARATH2.934e-5959.41Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTHB_PHAAN1.786e-5854.50Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH15_ARATH2.328e-5852.79Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTHA_PHAAN1.143e-5752.74Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH_WHEAT1.143e-5757.14Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH7_ARATH2.747e-5753.23Probable xyloglucan endotransglucosylase/hydrolase... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP1YM03FM1 TF Citrus clementina cDNA clone KN0AAP1YM03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924920 ID=FC924920; Name=FC924920; organism=Citrus clementina; type=EST; length=712bp
AGAAGCTTCAACTTCCCTCCACTTCACTGGGCCTGCTCTGCTCATTCGCT
TACTTCCTCTCCCCGTTCTTCTGTCTTCATTCTTCAATGGTTAAAATGTC
TTTGATTTTCAGTCTGTTTGTGGGTCTTTTAATGGTAGGTTTGGTCAGCT
CAGCTAAGTTTGATGACCTTTATCAAACAAGCTGGGCATTTAATCATGTT
CAGTATGATGGGGACACTCTCAAGCTTAACCTCGATAATTATTCCGGAGC
TGGGTTTGCGTCAAAGAGCAAGTATTTGTTTGGGAAAGTCTCCATCCAAA
TTAAACTTGTAGGGGGTGACTCTGCTGGAACTGTCACTGCCTTCTATATG
TCATCAGACGGTCCAAATCACAACGAGTTCGATTTTGAGTTCCTGGGGAA
CACTACAGGAGAGCCATACTTAGTCCAAACCAATGTTTATGTGAATGGTG
TGGGCAACAGAGAGCAGAGACTTGACCTCTGGTTCGACCCAACAAAGGAA
TTTCATACCTATTCCCTCCTTTGGAACCAGCGCCAAGTTGTATTTTTGGT
GGATGAGACCCCAATTAGAGTGCACACTAACTTGGAGCACAAAGGAATTC
CCTTCCCAAAGGACCAAGCCATGGGTGTGTACAGTTCAATATGGAATGCT
GATGACTGGGCCACACAGGGGGGGAAAGGTCAAGACAGACTGGAAGCCTT
GCACCTTTTGTT
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