FC924924

Overview
NameFC924924
Unique NameFC924924
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length640
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC924924_ssr194 microsatellite FC924924_ssr194:194..205. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14618 contig Ccv1_Contig14618:4..643. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC924924 vs. ExPASy Swiss-Prot
Match: PR1A1_ARATH (PRA1 family protein A1 OS=Arabidopsis thaliana GN=PRA1A1 PE=2 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 2.504e-56
Identity = 104/138 (75.36%), Postives = 114/138 (82.61%), Query Frame = 1 
Query:  226 MDWGNVTAEDLIDALREVDWSSPPRPLSEFFSRFTVPRSSAKWNSRLKCNLYYYRTNYFIMITVILGLGFLKRPVXXXXXXXXXXXXXFLNDSFAGTFNEKVTRTVRQFSPHLAAKMRPPLTPVIRGRPSAKRAIYIC 639
            MDWGNVT +DL DALREVDWSSPPRP SEFFSRFTVP+S  KW+SRLKCNLYYYRTNYFIMI VILGLG L RP+             FLNDSFAG+F+EK TRTVR+FSP LAAKMRPPLTPV RGRPS+KRAI++C
Sbjct:    1 MDWGNVTVDDLFDALREVDWSSPPRPPSEFFSRFTVPKSVPKWDSRLKCNLYYYRTNYFIMIVVILGLGVLTRPLAIFAALLTALSLAFLNDSFAGSFSEKATRTVRRFSPQLAAKMRPPLTPVTRGRPSSKRAIHVC 138
[Close]
BLAST of FC924924 vs. ExPASy Swiss-Prot
Match: PR1A2_ARATH (PRA1 family protein A2 OS=Arabidopsis thaliana GN=PRA1A2 PE=2 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.246e-47
Identity = 85/138 (61.59%), Postives = 103/138 (74.64%), Query Frame = 1 
Query:  226 MDWGNVTAEDLIDALREVDWSSPPRPLSEFFSRFTVPRSSAKWNSRLKCNLYYYRTNYFIMITVILGLGFLKRPVXXXXXXXXXXXXXFLNDSFAGTFNEKVTRTVRQFSPHLAAKMRPPLTPVIRGRPSAKRAIYIC 639
            MDW NV AED+I+ALREV+WS+PPR   EFFSRF  PRS +KW SRLKCNLYYYRTNYFI++  +LGL  + RP+             FLNDSFA +FNEK  RT+R FSPH+AAKMRPP  PVIRGR +A++ +Y+C
Sbjct:    1 MDWDNVAAEDVIEALREVEWSTPPRSFGEFFSRFAFPRSFSKWKSRLKCNLYYYRTNYFILVIFVLGLALVTRPLALVGAALTALSIAFLNDSFAASFNEKFIRTIRHFSPHMAAKMRPPHMPVIRGRSTARKTVYVC 138
[Close]
BLAST of FC924924 vs. ExPASy Swiss-Prot
Match: PR1A3_ARATH (PRA1 family protein A3 OS=Arabidopsis thaliana GN=PRA1A3 PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 6.182e-47
Identity = 86/138 (62.32%), Postives = 103/138 (74.64%), Query Frame = 1 
Query:  226 MDWGNVTAEDLIDALREVDWSSPPRPLSEFFSRFTVPRSSAKWNSRLKCNLYYYRTNYFIMITVILGLGFLKRPVXXXXXXXXXXXXXFLNDSFAGTFNEKVTRTVRQFSPHLAAKMRPPLTPVIRGRPSAKRAIYIC 639
            MDW +V AED+I+ALREV+WS+ PR L+EFFSRF  PRS +KW SRLKCNLYYYRTNYFI+   +LGL  + RP+             FLNDSFA TFNEK+ RT+R FSPHLAAKMRPP  PVIRGR + ++ +YIC
Sbjct:    1 MDWDSVAAEDVIEALREVEWSASPRSLAEFFSRFAFPRSFSKWMSRLKCNLYYYRTNYFILFVFVLGLALITRPLAILGAALTALSLAFLNDSFAATFNEKMIRTIRHFSPHLAAKMRPPHMPVIRGRSATRKTVYIC 138
The following BLAST results are available for this feature:
BLAST of FC924924 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
PR1A1_ARATH2.504e-5675.36PRA1 family protein A1 OS=Arabidopsis thaliana GN=... [more]
PR1A2_ARATH1.246e-4761.59PRA1 family protein A2 OS=Arabidopsis thaliana GN=... [more]
PR1A3_ARATH6.182e-4762.32PRA1 family protein A3 OS=Arabidopsis thaliana GN=... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP1YM05FM1 TF Citrus clementina cDNA clone KN0AAP1YM05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924924 ID=FC924924; Name=FC924924; organism=Citrus clementina; type=EST; length=640bp
CACAACTGTCCCTTGCCGTTAAGTCATTCCCTGGCTCACTGCACAAGTCC
CATTCAATTCAATTCTCTTCATCACATCGCAGGAAACCCACAGCCACAGC
CTCGACTCTCTCTTAATCTGCCTAGGGTTTCGCGGATCATTTTATTTTGC
ACAAAATAAATCGTTTTCTAGGGTTTCGGAAGAGCGGAATATTATAATAA
TAATAACAATAGTAGTAATCAAGCGATGGATTGGGGAAACGTAACAGCAG
AAGATCTTATCGACGCGCTTCGTGAAGTTGACTGGTCGTCTCCACCGCGT
CCTCTCTCCGAGTTCTTCTCCAGGTTCACCGTTCCGAGATCCTCCGCCAA
ATGGAACAGCCGATTGAAATGCAATCTTTACTACTACCGAACAAACTACT
TTATCATGATTACTGTCATTCTTGGGTTGGGTTTCCTAAAGAGACCTGTT
GCTATTATTGCTGCTCTTTTGACAGCCCTTAGTATTGCATTTCTCAATGA
CAGCTTTGCAGGTACTTTCAATGAGAAGGTGACAAGAACTGTGAGGCAAT
TTTCTCCACATCTAGCTGCAAAGATGAGGCCTCCTCTTACACCTGTTATT
CGTGGGCGCCCATCAGCGAAAAGAGCAATCTATATATGTG
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