FC924930

Overview
NameFC924930
Unique NameFC924930
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length417
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3652 contig Ccv1_Contig3652:1..417. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC924930 vs. ExPASy Swiss-Prot
Match: CALS3_ARATH (Callose synthase 3 OS=Arabidopsis thaliana GN=CALS3 PE=2 SV=2)

HSP 1 Score: 186.422 bits (472), Expect = 3.791e-47
Identity = 87/137 (63.50%), Postives = 106/137 (77.37%), Query Frame = 2
Query:    2 VYHSFFTKSTQNFLVYGASWVVIIFVLLLVKGMSVGRRRFSANFQLLFRMIKGLVXXXXXXXXXXXXXXPHMTFKDILLCILAFMPTGWGLLLIAQACKPLMQLGGIWGSIKTLARGYEIVMGLLPFTHVAFLAWFP 412
            VYH   T+ T+NFLVYG SW+VI  +L ++K +SVGRRRFSA+FQL+FR+IKGL+               HMT +DI++CILAFMPTGWG+LLIAQACKP++   G WGS++TLARGYEIVMGLL FT VAFLAWFP
Sbjct: 1790 VYHLTITEKTKNFLVYGVSWLVIFLILFVMKTVSVGRRRFSASFQLMFRLIKGLIFMTFIAIIVILITLAHMTIQDIIVCILAFMPTGWGMLLIAQACKPVVHRAGFWGSVRTLARGYEIVMGLLLFTPVAFLAWFP 1926          
BLAST of FC924930 vs. ExPASy Swiss-Prot
Match: CALS1_ARATH (Callose synthase 1 OS=Arabidopsis thaliana GN=CALS1 PE=1 SV=2)

HSP 1 Score: 185.652 bits (470), Expect = 6.467e-47
Identity = 92/138 (66.67%), Postives = 106/138 (76.81%), Query Frame = 2
Query:    2 VYH-SFFTKSTQNFLVYGASWVVIIFVLLLVKGMSVGRRRFSANFQLLFRMIKGLVXXXXXXXXXXXXXXPHMTFKDILLCILAFMPTGWGLLLIAQACKPLMQLGGIWGSIKTLARGYEIVMGLLPFTHVAFLAWFP 412
            VYH S F    Q+F VYGASW VI+F+LL+VKG+ VGRRRFS NFQLLFR+IKGLV              P +T KD+ +C+LAFMPTGWG+LLIAQACKPL+Q  GIW S++TLARGYEIVMGLL FT VAFLAWFP
Sbjct: 1775 VYHLSTFKGKNQSFWVYGASWFVILFILLIVKGLGVGRRRFSTNFQLLFRIIKGLVFLTFVAILITFLALPLITIKDLFICMLAFMPTGWGMLLIAQACKPLIQQLGIWSSVRTLARGYEIVMGLLLFTPVAFLAWFP 1912          
BLAST of FC924930 vs. ExPASy Swiss-Prot
Match: CALS2_ARATH (Callose synthase 2 OS=Arabidopsis thaliana GN=CALS2 PE=2 SV=2)

HSP 1 Score: 173.326 bits (438), Expect = 3.321e-43
Identity = 84/134 (62.69%), Postives = 100/134 (74.63%), Query Frame = 2
Query:   11 SFFTKSTQNFLVYGASWVVIIFVLLLVKGMSVGRRRFSANFQLLFRMIKGLVXXXXXXXXXXXXXXPHMTFKDILLCILAFMPTGWGLLLIAQACKPLMQLGGIWGSIKTLARGYEIVMGLLPFTHVAFLAWFP 412
            S F +  Q+  +YGASW VI+F+LL+VKG+ VGR+RFS NFQLLFR+IKG V                +T KDI LC+LAFMPTGWG+LLIAQACKPL+Q  G W S++TLARGYEI+MGLL FT VAFLAWFP
Sbjct: 1780 STFKQENQSLWIYGASWFVILFILLIVKGLGVGRQRFSTNFQLLFRIIKGFVFLTFLGLLITFLALRFLTPKDIFLCMLAFMPTGWGMLLIAQACKPLIQRLGFWSSVRTLARGYEILMGLLLFTPVAFLAWFP 1913          
BLAST of FC924930 vs. ExPASy Swiss-Prot
Match: CALS5_ARATH (Callose synthase 5 OS=Arabidopsis thaliana GN=CALS5 PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 3.565e-29
Identity = 62/142 (43.66%), Postives = 93/142 (65.49%), Query Frame = 2
Query:    2 VYHSFFTKSTQ-----NFLVYGASWVVIIFVLLLVKGMSVGRRRFSANFQLLFRMIKGLVXXXXXXXXXXXXXXPHMTFKDILLCILAFMPTGWGLLLIAQACKPLMQLGGIWGSIKTLARGYEIVMGLLPFTHVAFLAWFP 412
            VY    TK ++     + +VYG SW+VI+ V++++K +S+GR++FSA+FQL+FR++K  +                +T  DI+  +LAF+PTGW LL I+Q  +PLM+  G+WGS+K LARGYE +MG++ F  V  LAWFP
Sbjct: 1750 VYQLNLTKESRMGKQHSIIVYGLSWLVIVAVMIVLKIVSMGRKKFSADFQLMFRLLKLFLFIGSVVIVGMLFHFLKLTVGDIMQSLLAFLPTGWALLQISQVARPLMKTVGMWGSVKALARGYEYIMGVVIFMPVTVLAWFP 1891          
BLAST of FC924930 vs. ExPASy Swiss-Prot
Match: CALS7_ARATH (Callose synthase 7 OS=Arabidopsis thaliana GN=CALS7 PE=2 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 2.311e-28
Identity = 58/137 (42.34%), Postives = 85/137 (62.04%), Query Frame = 2
Query:    2 VYHSFFTKSTQNFLVYGASWVVIIFVLLLVKGMSVGRRRFSANFQLLFRMIKGLVXXXXXXXXXXXXXXPHMTFKDILLCILAFMPTGWGLLLIAQACKPLMQLGGIWGSIKTLARGYEIVMGLLPFTHVAFLAWFP 412
            VYH    +    FLVYG SW +++ VLL++K +S+GRR+F  +FQ++FR++K L+                +T  D+   ILAF+PTGW +LLI QA + + +  G W S+K L R YE +MGL+ FT +A L+WFP
Sbjct: 1760 VYHLNIARRHTTFLVYGLSWAILLSVLLVLKMVSMGRRKFGTDFQVMFRILKALLFLGFLSVMTVLFVVCGLTISDLFASILAFLPTGWAILLIGQALRSVFKGLGFWDSVKELGRAYEYIMGLVIFTPIAVLSWFP 1896          
BLAST of FC924930 vs. ExPASy Swiss-Prot
Match: CALS6_ARATH (Putative callose synthase 6 OS=Arabidopsis thaliana GN=CALS6 PE=3 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 8.781e-28
Identity = 58/138 (42.03%), Postives = 88/138 (63.77%), Query Frame = 2
Query:    2 VYHSFFTKSTQNFLVYGASWVVIIFVLLLVKGMSVGRRRFSANFQLLFRMIKGLVXXXXXXXXXXXXXXPHMTFKDILLCILAFMPTGWGLLLIAQACKPLMQLGGIWGSIKTLARGYEIVMGLLPFTHVAFLAWFPI 415
            VY    ++ +++FLVYG SWVV++  LL++K +S+GRRRF  +FQL+FR++K L+                +T  D+   +LAF+PTGW +LLI Q  +  ++  G+W S+K L R YE +MGL+ F  +A L+WFPI
Sbjct: 1748 VYQLNISQRSKSFLVYGLSWVVLLTSLLVLKMVSMGRRRFGTDFQLMFRILKALLFLGFLSVMTILFVVFKLTLTDLSASVLAFLPTGWAILLIGQVLRSPIKALGVWDSVKELGRAYENIMGLVIFAPIAVLSWFPI 1885          
BLAST of FC924930 vs. ExPASy Swiss-Prot
Match: CALS4_ARATH (Callose synthase 4 OS=Arabidopsis thaliana GN=CALS4 PE=2 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 3.337e-27
Identity = 61/134 (45.52%), Postives = 82/134 (61.19%), Query Frame = 2
Query:   11 SFFTKSTQNFLVYGASWVVIIFVLLLVKGMSVGRRRFSANFQLLFRMIKGLVXXXXXXXXXXXXXXPHMTFKDILLCILAFMPTGWGLLLIAQACKPLMQLGGIWGSIKTLARGYEIVMGLLPFTHVAFLAWFP 412
            S F     +  V+GASW++I+ +LL V  +   RRR    FQLLFR+IK  +                +  +D+ LC+LA +PTGWGLLLIAQ+CKPL+Q  GIW  + TLA  Y++VMG L F  +AF+AWFP
Sbjct: 1700 SAFKNKYSSLWVFGASWLLILILLLTVTVLDYARRRLGTEFQLLFRIIKVSLFLAFMAIFITLMTCRLILPQDVFLCMLALIPTGWGLLLIAQSCKPLIQQPGIWSWVMTLAWVYDLVMGSLLFIPIAFMAWFP 1833          
BLAST of FC924930 vs. ExPASy Swiss-Prot
Match: CALS8_ARATH (Putative callose synthase 8 OS=Arabidopsis thaliana GN=CALS8 PE=3 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 3.123e-25
Identity = 57/138 (41.30%), Postives = 79/138 (57.25%), Query Frame = 2
Query:    2 VYHSFFTKSTQNFLVYGASWVVIIFVLLLVKGMSVGRRRFSANFQLLFRMIKGLVXXXXXXXXXXXXXXPHMTFKDILLCILAFMPTGWGLLLIAQACKPLMQLGGIWGSIKTLARGYEIVMGLLPFTHVAFLAWFPI 415
            VYH   T+S  N +VY  SWVVI+     VK + +GR+ FS    L+FR  K  V               H++ KD+L+  LAF+PTGWGL+LIAQA +P ++   +W   + LAR Y+  MG++ F  +A LAW PI
Sbjct: 1808 VYHLDITQSNTNIIVYALSWVVILATFFTVKAVDLGRQLFSTRKHLVFRFFKVFVFVSILTIIITLANICHLSVKDLLVSCLAFLPTGWGLILIAQAVRPKIEGTSLWEFTQVLARAYDYGMGVVLFAPMAILAWLPI 1945          
BLAST of FC924930 vs. ExPASy Swiss-Prot
Match: CALS9_ARATH (Callose synthase 9 OS=Arabidopsis thaliana GN=CALS9 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.505e-23
Identity = 56/137 (40.88%), Postives = 79/137 (57.66%), Query Frame = 2
Query:    2 VYHSFFTKSTQNFLVYGASWVVIIFVLLLVKGMSVGRRRFSANFQLLFRMIKGLVXXXXXXXXXXXXXXPHMTFKDILLCILAFMPTGWGLLLIAQACKPLMQLGGIWGSIKTLARGYEIVMGLLPFTHVAFLAWFP 412
            VY      S  +F VYG SWV    +++L K  +  ++  S NFQLL R I+GL                 ++  DI  C+LAF+PTGWG+L IA A KP+++  G+W SI++LAR Y+ +MG+L F  VA  +WFP
Sbjct: 1762 VYKLKLQGSDTSFAVYGWSWVAFAMIIVLFKVFTFSQK-ISVNFQLLLRFIQGLSLLMALAGIIVAVVLTPLSVTDIFACVLAFIPTGWGILSIACAWKPVLKRMGMWKSIRSLARLYDALMGMLIFLPVALCSWFP 1897          
BLAST of FC924930 vs. ExPASy Swiss-Prot
Match: CALSC_ARATH (Callose synthase 12 OS=Arabidopsis thaliana GN=CALS12 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.461e-16
Identity = 44/138 (31.88%), Postives = 73/138 (52.90%), Query Frame = 2
Query:    2 VYHSFFTKSTQNFLVYGASWVVIIFVLLLVKGMSVGRRRFSANFQLLFRMIKGLVXXXXXXXXXXXXXXPHMTFKDILLCILAFMPTGWGLLLIAQACKPLMQLGGI-WGSIKTLARGYEIVMGLLPFTHVAFLAWFP 412
            VY       + +  VY  SW+ I  + +L   +   R ++SA   + +R+++ L+               H +F DI   +LAF+PTGWG+LLIAQ  +  ++   I W ++ ++AR Y+I+ G+L    VAFL+W P
Sbjct: 1609 VYQLKIANGSTSLFVYLFSWIYIFAIFVLFLVIQYARDKYSAKAHIRYRLVQFLLIVLAILVIVALLEFTHFSFIDIFTSLLAFIPTGWGILLIAQTQRKWLKNYTIFWNAVVSVARMYDILFGILIMVPVAFLSWMP 1746          
The following BLAST results are available for this feature:
BLAST of FC924930 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
CALS3_ARATH3.791e-4763.50Callose synthase 3 OS=Arabidopsis thaliana GN=CALS... [more]
CALS1_ARATH6.467e-4766.67Callose synthase 1 OS=Arabidopsis thaliana GN=CALS... [more]
CALS2_ARATH3.321e-4362.69Callose synthase 2 OS=Arabidopsis thaliana GN=CALS... [more]
CALS5_ARATH3.565e-2943.66Callose synthase 5 OS=Arabidopsis thaliana GN=CALS... [more]
CALS7_ARATH2.311e-2842.34Callose synthase 7 OS=Arabidopsis thaliana GN=CALS... [more]
CALS6_ARATH8.781e-2842.03Putative callose synthase 6 OS=Arabidopsis thalian... [more]
CALS4_ARATH3.337e-2745.52Callose synthase 4 OS=Arabidopsis thaliana GN=CALS... [more]
CALS8_ARATH3.123e-2541.30Putative callose synthase 8 OS=Arabidopsis thalian... [more]
CALS9_ARATH8.505e-2340.88Callose synthase 9 OS=Arabidopsis thaliana GN=CALS... [more]
CALSC_ARATH3.461e-1631.88Callose synthase 12 OS=Arabidopsis thaliana GN=CAL... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP6YN22FM1 TF Citrus clementina cDNA clone KN0AAP6YN22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924930 ID=FC924930; Name=FC924930; organism=Citrus clementina; type=EST; length=417bp
CGTTTATCACTCGTTCTTTACCAAGAGTACCCAGAACTTTCTGGTTTATG
GTGCTTCATGGGTTGTGATCATTTTCGTATTGTTGCTGGTGAAGGGAATG
TCTGTTGGAAGGCGACGATTCAGTGCAAATTTCCAGCTTTTGTTTAGAAT
GATTAAGGGTTTGGTATTCATTTCATTTATTACCATCTTCATCATTTTGA
TAGCAATCCCTCATATGACCTTCAAAGATATCTTGCTGTGTATACTTGCC
TTCATGCCAACAGGATGGGGACTACTACTGATCGCACAAGCTTGTAAGCC
ATTGATGCAACTTGGTGGAATTTGGGGATCAATTAAGACACTTGCTCGTG
GTTATGAAATAGTGATGGGATTACTTCCATTCACCCATGTTGCATTCTTG
GCGTGGTTCCCCATTTG
back to top