FC924932

Overview
NameFC924932
Unique NameFC924932
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length479
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3653 contig Ccv1_Contig3653:2..480. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC924932 vs. ExPASy Swiss-Prot
Match: VPS33_ARATH (Vacuolar protein sorting-associated protein 33 homolog OS=Arabidopsis thaliana GN=VPS33 PE=2 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 1.605e-62
Identity = 117/155 (75.48%), Postives = 140/155 (90.32%), Query Frame = 1
Query:    4 VDGYASSQWHIAKAIHKLEFTFGLIPNVRAKGKASVRVAEILNRMQTEEPVSLSDMNIPEINTLVLIDREVDMVTPMCSQLTYEGLVDEFLRINNGSVELDASIMGAQQQDGKKMKVPLNSSDKLFKEIRDLNFEVVVQVLPQKATSMKQDYTDV 468
            VDG  SS WHIAKAIH+LEF+FG+I  +RAKGKASVRVA+ILNRMQ EEPV+ +D+  PE++TL+L+DREVDMVTPMCSQLTYEGL+DE L I+NG+VE+D+S+MGA QQ+GKKMKVPLNSSDKLFKE RDLNFEVVVQVL QKA +MK+DYT++
Sbjct:  164 VDGDVSSLWHIAKAIHELEFSFGVISKMRAKGKASVRVADILNRMQVEEPVNSNDVGRPEVDTLILLDREVDMVTPMCSQLTYEGLIDEILHISNGAVEVDSSVMGA-QQEGKKMKVPLNSSDKLFKETRDLNFEVVVQVLRQKAMTMKEDYTEI 317          
BLAST of FC924932 vs. ExPASy Swiss-Prot
Match: VP33A_RAT (Vacuolar protein sorting-associated protein 33A OS=Rattus norvegicus GN=Vps33a PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.795e-21
Identity = 58/153 (37.91%), Postives = 91/153 (59.48%), Query Frame = 1
Query:    4 VDGYASSQWHIAKAIHKLEFTFGLIPNVRAKGKASVRVAEILNRMQTEEPVSLSDMNIPEINTLVLIDREVDMVTPMCSQLTYEGLVDEFLRINNGSVELDASIMGAQQQDG--------KKMKVPLNSSDKLFKEIRDLNFEVVVQVLPQKA 438
            ++G  +S +H AK +  L+  +G IP +  KG+ + +VA ++ RM+ E   S + +  P  + L+L+DR VD++TP+ SQLTYEGL+DE   I N  V+L       ++Q G        +  K+ LNS+++L+ EIRD NF  V  VL +KA
Sbjct:  165 LEGDQTSLYHAAKGLMTLQALYGTIPQIFGKGECARQVANMMVRMKREFTGSQNSV-FPVFDNLLLLDRNVDLLTPLASQLTYEGLIDEIYGIQNSYVKLPPEKFAPKKQGGGGGKDLPTEAKKLQLNSAEELYAEIRDKNFNAVGSVLSKKA 316          
BLAST of FC924932 vs. ExPASy Swiss-Prot
Match: VP33A_MOUSE (Vacuolar protein sorting-associated protein 33A OS=Mus musculus GN=Vps33a PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.345e-21
Identity = 58/154 (37.66%), Postives = 91/154 (59.09%), Query Frame = 1
Query:    4 VDGYASSQWHIAKAIHKLEFTFGLIPNVRAKGKASVRVAEILNRMQTEEPVSLSDMNIPEINTLVLIDREVDMVTPMCSQLTYEGLVDEFLRINNGSVELDASIMGAQQQDG---------KKMKVPLNSSDKLFKEIRDLNFEVVVQVLPQKA 438
            ++G  +S +H AK +  L+  +G IP +  KG+ + +VA ++ RM+ E   S + +  P  + L+L+DR VD++TP+ SQLTYEGL+DE   I N  V+L       ++Q G         +  K+ LNS+++L+ EIRD NF  V  VL +KA
Sbjct:  165 LEGDQTSLYHAAKGLMTLQALYGTIPQIFGKGECARQVANMMVRMKREFTGSQNSV-FPVFDNLLLLDRNVDLLTPLASQLTYEGLIDEIYGIQNSYVKLPPEKFAPKKQGGGSGGKDLPTEAKKLQLNSAEELYAEIRDKNFNAVGSVLSKKA 317          
BLAST of FC924932 vs. ExPASy Swiss-Prot
Match: VP33A_HUMAN (Vacuolar protein sorting-associated protein 33A OS=Homo sapiens GN=VPS33A PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 3.999e-21
Identity = 59/152 (38.82%), Postives = 92/152 (60.53%), Query Frame = 1
Query:    4 VDGYASSQWHIAKAIHKLEFTFGLIPNVRAKGKASVRVAEILNRMQTEEPVSLSDMNIPEINTLVLIDREVDMVTPMCSQLTYEGLVDEFLRINNGSVELDASIMGAQQQ-DGKK------MKVPLNSSDKLFKEIRDLNFEVVVQVLPQKA 438
            ++G  +S +H AK +  L+  +G IP +  KG+ + +VA ++ RM+ E   S + +  P  + L+L+DR VD++TP+ +QLTYEGL+DE   I N  V+L       ++Q DG K       K+ LNS+++L+ EIRD NF  V  VL +KA
Sbjct:  165 LEGDQTSLYHAAKGLMTLQALYGTIPQIFGKGECARQVANMMIRMKREFTGSQNSI-FPVFDNLLLLDRNVDLLTPLATQLTYEGLIDEIYGIQNSYVKLPPEKFAPKKQGDGGKDLPTEAKKLQLNSAEELYAEIRDKNFNAVGSVLSKKA 315          
BLAST of FC924932 vs. ExPASy Swiss-Prot
Match: VP33B_BOVIN (Vacuolar protein sorting-associated protein 33B OS=Bos taurus GN=VPS33B PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.287e-19
Identity = 54/142 (38.03%), Postives = 80/142 (56.34%), Query Frame = 1
Query:   34 IAKAIHKLEFTFGLIPNVRAKGKASVRVAEILNRMQTEEPVSLSDMNIPEINTLVLIDREVDMVTPMCSQLTYEGLVDEFLRINNGSVELDASIMGAQQQDGKKMKVPLNSSDKLFKEIRDLNFEVVVQVLPQKATSMKQDY 459
            +A+A+H L   +G  PN    G+ +    E+  R++ EE         PEI  + L+DR+VD VT +CSQ+ YEGLVD+  RI  GSV+    +  +     K +KV LN+ DK+F EIR+ +F  V   L QKA +++  Y
Sbjct:  176 LAQALHLLSTLYGPFPNCYGIGRCAKMSYELWKRLEEEEDGETKGRR-PEIGHIFLLDRDVDFVTALCSQVVYEGLVDDTFRIKCGSVDFGPEVTSSD----KSLKVLLNAEDKVFNEIRNEHFSNVFGFLSQKARNLQAQY 312          
BLAST of FC924932 vs. ExPASy Swiss-Prot
Match: VP33B_HUMAN (Vacuolar protein sorting-associated protein 33B OS=Homo sapiens GN=VPS33B PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.195e-19
Identity = 53/142 (37.32%), Postives = 79/142 (55.63%), Query Frame = 1
Query:   34 IAKAIHKLEFTFGLIPNVRAKGKASVRVAEILNRMQTEEPVSLSDMNIPEINTLVLIDREVDMVTPMCSQLTYEGLVDEFLRINNGSVELDASIMGAQQQDGKKMKVPLNSSDKLFKEIRDLNFEVVVQVLPQKATSMKQDY 459
            +A+A+H L   +G  PN    G+ +    E+   ++ EE         PEI  + L+DR+VD VT +CSQ+ YEGLVD+  RI  GSV+    +  +     K +KV LN+ DK+F EIR+ +F  V   L QKA +++  Y
Sbjct:  176 VAQALHLLSTLYGPFPNCYGIGRCAKMAYELWRNLEEEEDGETKGRR-PEIGHIFLLDRDVDFVTALCSQVVYEGLVDDTFRIKCGSVDFGPEVTSSD----KSLKVLLNAEDKVFNEIRNEHFSNVFGFLSQKARNLQAQY 312          
BLAST of FC924932 vs. ExPASy Swiss-Prot
Match: VP33B_RAT (Vacuolar protein sorting-associated protein 33B OS=Rattus norvegicus GN=Vps33b PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 3.743e-19
Identity = 52/142 (36.62%), Postives = 80/142 (56.34%), Query Frame = 1
Query:   34 IAKAIHKLEFTFGLIPNVRAKGKASVRVAEILNRMQTEEPVSLSDMNIPEINTLVLIDREVDMVTPMCSQLTYEGLVDEFLRINNGSVELDASIMGAQQQDGKKMKVPLNSSDKLFKEIRDLNFEVVVQVLPQKATSMKQDY 459
            +A+A+H L   +G  PN    G+ +    ++  +++ EE         PEI  + L+DR+VD VT +CSQ+ YEGLVD+  RI  GSV+    +  +     K +KV LN+ DK+F EIR+ +F  V   L QKA +++  Y
Sbjct:  176 VAQALHLLSTLYGPFPNCYGIGRCTKMSYDLWRKLEEEEDSETKGRR-PEIGHIFLLDRDVDFVTALCSQVVYEGLVDDTFRIKCGSVDFGPEVTSSD----KSLKVLLNAEDKVFSEIRNEHFSNVFGFLSQKARNLQAQY 312          
BLAST of FC924932 vs. ExPASy Swiss-Prot
Match: VP33B_MOUSE (Vacuolar protein sorting-associated protein 33B OS=Mus musculus GN=Vps33b PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 3.743e-19
Identity = 52/142 (36.62%), Postives = 80/142 (56.34%), Query Frame = 1
Query:   34 IAKAIHKLEFTFGLIPNVRAKGKASVRVAEILNRMQTEEPVSLSDMNIPEINTLVLIDREVDMVTPMCSQLTYEGLVDEFLRINNGSVELDASIMGAQQQDGKKMKVPLNSSDKLFKEIRDLNFEVVVQVLPQKATSMKQDY 459
            +A+A+H L   +G  PN    G+ +    ++  +++ EE         PEI  + L+DR+VD VT +CSQ+ YEGLVD+  RI  GSV+    +  +     K +KV LN+ DK+F EIR+ +F  V   L QKA +++  Y
Sbjct:  176 VAQALHLLSTLYGPFPNCYGIGRCAKMSYDLWRKLEEEEDSETKGRK-PEIGHIFLLDRDVDFVTALCSQVVYEGLVDDTFRIKCGSVDFGPEVTSSD----KSLKVLLNAEDKVFSEIRNEHFSNVFGFLSQKARNLQAQY 312          
BLAST of FC924932 vs. ExPASy Swiss-Prot
Match: VP33A_DROME (Vacuolar protein sorting-associated protein 33A OS=Drosophila melanogaster GN=car PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 8.077e-14
Identity = 50/168 (29.76%), Postives = 90/168 (53.57%), Query Frame = 1
Query:    4 VDGYASSQWHIAKAIHKLEFTFGLIPNVRAKGKASVRVAEILNRMQTEEPVSLSDMNIPEINTLVLIDREVDMVTPMCSQLTYEGLVDEFLRINNGSVELDA-----------------------SIMGAQQQDGKKMKVPLNSSDKLFKEIRDLNFEVVVQVLPQKA 438
            VDG  SS +  A  + +L+  +G IP +  KG+ + RV E   ++  +E  +L + +   ++ L+L+DR +D+++P+ +QLTYEGL+DEF  I    + L A                       S++G    D +K  + L+S ++L+ E+R+ +F  V ++L +KA
Sbjct:  166 VDGDTSSLYQAAVGLVQLQRLYGRIPKIYGKGEFAHRVWEHAKQLGRDER-TLYNGDKGVVDQLILLDRSIDLLSPLATQLTYEGLIDEFYGIRQNKLTLPAENFPSDGALPGGGGSGPRVEESQSLLG----DTEKKTILLHSGEQLYAELRNKHFNEVTKLLARKA 328          
BLAST of FC924932 vs. ExPASy Swiss-Prot
Match: VPS33_SCHPO (Vacuolar protein sorting-associated protein 33 OS=Schizosaccharomyces pombe GN=vps33 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.598e-12
Identity = 47/146 (32.19%), Postives = 75/146 (51.37%), Query Frame = 1
Query:   43 AIHKLEFTFGLIPNVRAKGKASVRVAEILNRMQTEEPVSLSDMNIPEINTL----VLIDREVDMVTPMCSQLTYEGLVDEFLRINNGSVELDASIMGAQQ--QDGKKMKVPL-NSSDKLFKEIRDLNFEVVVQVLPQKATSMKQDY 459
            A+   E T G  P V  +G  + ++ E+L +   EE          EI+ L    +L+DR +D +TP  +QLTY G +DE L I   +V+L +S++   +    G   K  L +SS ++ KEIRD+NF  +   L + A  +  D+
Sbjct:  160 ALIDFERTHGRFPRVSGRGPYAAKMLELLEKTYQEEATINFGKVEGEISALYDSVLLVDRSLDRITPFLTQLTYFGFLDEILGIQQMNVKLPSSLVNRNEASNTGPMKKFSLSSSSSQITKEIRDINFNCIGPYLSKIARKLSSDF 305          
The following BLAST results are available for this feature:
BLAST of FC924932 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
VPS33_ARATH1.605e-6275.48Vacuolar protein sorting-associated protein 33 hom... [more]
VP33A_RAT1.795e-2137.91Vacuolar protein sorting-associated protein 33A OS... [more]
VP33A_MOUSE2.345e-2137.66Vacuolar protein sorting-associated protein 33A OS... [more]
VP33A_HUMAN3.999e-2138.82Vacuolar protein sorting-associated protein 33A OS... [more]
VP33B_BOVIN1.287e-1938.03Vacuolar protein sorting-associated protein 33B OS... [more]
VP33B_HUMAN2.195e-1937.32Vacuolar protein sorting-associated protein 33B OS... [more]
VP33B_RAT3.743e-1936.62Vacuolar protein sorting-associated protein 33B OS... [more]
VP33B_MOUSE3.743e-1936.62Vacuolar protein sorting-associated protein 33B OS... [more]
VP33A_DROME8.077e-1429.76Vacuolar protein sorting-associated protein 33A OS... [more]
VPS33_SCHPO2.598e-1232.19Vacuolar protein sorting-associated protein 33 OS=... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAP6YN23FM1 TF Citrus clementina cDNA clone KN0AAP6YN23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924932 ID=FC924932; Name=FC924932; organism=Citrus clementina; type=EST; length=479bp
CAAGTTGATGGTTATGCAAGTTCCCAATGGCACATTGCAAAAGCAATTCA
CAAGCTTGAGTTTACTTTTGGATTAATACCAAATGTGAGAGCCAAGGGAA
AAGCATCAGTACGTGTTGCAGAAATTCTGAACCGCATGCAGACAGAGGAA
CCAGTTTCCTTATCTGATATGAACATCCCAGAGATAAATACACTTGTCCT
TATCGATAGAGAGGTTGACATGGTTACTCCCATGTGTTCTCAATTAACAT
ATGAAGGACTGGTGGATGAGTTTCTGCGTATCAATAATGGTTCTGTGGAG
CTTGACGCATCAATTATGGGTGCACAACAACAAGATGGAAAAAAGATGAA
AGTTCCACTTAATTCAAGTGACAAGCTGTTCAAGGAAATACGGGATCTCA
ACTTCGAAGTTGTTGTCCAGGTTCTGCCTCAAAAAGCGACATCCATGAAA
CAGGACTATACTGACGTGACCCACAATGT
back to top