FC924938

Overview
NameFC924938
Unique NameFC924938
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length539
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1803 contig Ccv1_Contig1803:1..539. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC924938 vs. ExPASy Swiss-Prot
Match: Y2881_DICDI (Uncharacterized protein DDB_G0288155 OS=Dictyostelium discoideum GN=DDB_G0288155 PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.126e-31
Identity = 67/143 (46.85%), Postives = 95/143 (66.43%), Query Frame = 1
Query:  109 VGFWIRETGQALDRLGCRLQGNYYFQEQLSRHRTLMNIFDKAPVVDKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLRD 537
            +G  ++ TG  L R GC++QG+Y + E+L+RH  L    D AP+V +  F+AP+ASIIGDV +G+ SSIWY  VLRGDVNSI IG  T + D ++VH + +   G   PT IGD V +G  +++H  T+  E+F+G G+TL D
Sbjct:   10 LGEVVKNTGLILHRTGCKMQGDYAYVEKLNRHTRLTAFGDNAPIVGQKSFIAPNASIIGDVVIGKESSIWYNAVLRGDVNSIHIGDKTVVSDRTVVHCSSNGPLGP-KPTQIGDKVYIGPGSIVHAATILGESFIGTGSTLCD 151          
BLAST of FC924938 vs. ExPASy Swiss-Prot
Match: Y304_METJA (Uncharacterized protein MJ0304 OS=Methanocaldococcus jannaschii GN=MJ0304 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.802e-21
Identity = 49/98 (50.00%), Postives = 67/98 (68.37%), Query Frame = 1
Query:  238 VVDKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATL 531
            ++ K+V +A  A I+GDV +G  SS+WY  V+RGDV+ I IG+ +NIQD  +VH +K        PTIIGD V++GH AV+HGC +ED   VGM AT+
Sbjct:    1 MISKNVRIAKGAVIVGDVTIGDYSSVWYNAVIRGDVDKIIIGNYSNIQDCCVVHCSKG------YPTIIGDYVSIGHGAVIHGCRIEDNVLVGMNATI 92          
BLAST of FC924938 vs. ExPASy Swiss-Prot
Match: YRDA_SHIFL (Protein yrdA OS=Shigella flexneri GN=yrdA PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.578e-17
Identity = 46/105 (43.81%), Postives = 66/105 (62.86%), Query Frame = 1
Query:  226 DKAPVVDKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVA-KSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLRD 537
            D  P + + V +  S+ +IGDV++     IW   V+RGDV+ + IG+ TNIQD S++HV  KS+      P  IG++VTVGH  +LHGCT+ +   VGMG+ L D
Sbjct:   10 DLFPQIGQRVMIDDSSVVIGDVRLADDVGIWPLVVIRGDVHYVQIGARTNIQDGSMLHVTHKSSYNPDGNPLTIGEDVTVGHKVMLHGCTIGNRVLVGMGSILLD 114          
BLAST of FC924938 vs. ExPASy Swiss-Prot
Match: YRDA_ECOLI (Protein yrdA OS=Escherichia coli (strain K12) GN=yrdA PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.578e-17
Identity = 46/105 (43.81%), Postives = 66/105 (62.86%), Query Frame = 1
Query:  226 DKAPVVDKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVA-KSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLRD 537
            D  P + + V +  S+ +IGDV++     IW   V+RGDV+ + IG+ TNIQD S++HV  KS+      P  IG++VTVGH  +LHGCT+ +   VGMG+ L D
Sbjct:   10 DLFPQIGQRVMIDDSSVVIGDVRLADDVGIWPLVVIRGDVHYVQIGARTNIQDGSMLHVTHKSSYNPDGNPLTIGEDVTVGHKVMLHGCTIGNRVLVGMGSILLD 114          
BLAST of FC924938 vs. ExPASy Swiss-Prot
Match: Y3753_PSEAE (Uncharacterized protein PA3753 OS=Pseudomonas aeruginosa GN=PA3753 PE=3 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 1.578e-17
Identity = 42/94 (44.68%), Postives = 62/94 (65.96%), Query Frame = 1
Query:  250 DVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATL 531
            D ++APSA++IG V++  G+S+W+G VLRGD   I IG  +N+QD S++H           P  +G  VTVGH+A+LHGC+V D + VG+ A +
Sbjct:   15 DSWIAPSAAVIGKVRLDAGASVWFGAVLRGDNELIHIGEHSNVQDGSVMHTDMG------YPLTLGKGVTVGHNAMLHGCSVGDYSLVGINAVI 102          
BLAST of FC924938 vs. ExPASy Swiss-Prot
Match: UMP7_ARATH (Uncharacterized protein At5g63510, mitochondrial OS=Arabidopsis thaliana GN=At5g63510 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.887e-16
Identity = 42/101 (41.58%), Postives = 61/101 (60.40%), Query Frame = 1
Query:  235 PVVDKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLRD 537
            P V  D ++AP+  + G V V  GSS+W G VLRGD+N I++G  +N+Q+  +VH A S+  G    TII   VTVG  ++L  CT+E E  +G  + L +
Sbjct:   66 PKVAVDAYVAPNVVLAGQVTVWDGSSVWNGAVLRGDLNKITVGFCSNVQERCVVHAAWSSPTGLPAATIIDRYVTVGAYSLLRSCTIEPECIIGQHSILME 166          
BLAST of FC924938 vs. ExPASy Swiss-Prot
Match: UMP8_ARATH (Uncharacterized protein At3g48680, mitochondrial OS=Arabidopsis thaliana GN=At3g48680 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.631e-16
Identity = 41/101 (40.59%), Postives = 61/101 (60.40%), Query Frame = 1
Query:  235 PVVDKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLRD 537
            P V  D ++AP+  + G V V  GSS+W G VLRGD+N I++G  +N+Q+  +VH A S+  G    T+I   VTVG  ++L  CT+E E  +G  + L +
Sbjct:   70 PKVAVDAYVAPNVVLAGQVTVWDGSSVWNGAVLRGDLNKITVGFCSNVQERCVVHAAWSSPTGLPAQTLIDRYVTVGAYSLLRSCTIEPECIIGQHSILME 170          
BLAST of FC924938 vs. ExPASy Swiss-Prot
Match: PAAY_ECOLI (Phenylacetic acid degradation protein paaY OS=Escherichia coli (strain K12) GN=paaY PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.575e-15
Identity = 40/101 (39.60%), Postives = 59/101 (58.42%), Query Frame = 1
Query:  235 PVVDKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLRD 537
            PVV ++ F+ P+A +IGDV +G+G  +     LRGD   I +  G NIQDN ++H            T++G++  +GHSA+LHGC +   A VGM A + D
Sbjct:   11 PVVPEESFVHPTAVLIGDVILGKGVYVGPNASLRGDFGRIVVKDGANIQDNCVMHGFPEQ------DTVVGEDGHIGHSAILHGCIIRRNALVGMNAVVMD 105          
BLAST of FC924938 vs. ExPASy Swiss-Prot
Match: YTOA_BACSU (Uncharacterized transferase ytoA OS=Bacillus subtilis GN=ytoA PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 6.206e-14
Identity = 38/101 (37.62%), Postives = 56/101 (55.45%), Query Frame = 1
Query:  235 PVVDKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLRD 537
            P +    F+A +A+I GDV +G  SSIW+  V+RGDV    IG+  NIQD S +H + +         +I D+ T+GH   LH   +   A +GMG+ + D
Sbjct:   10 PDIHPTAFIADNATITGDVVIGEQSSIWFSVVIRGDVAPTRIGNRVNIQDLSCLHQSPNK------TLLIEDDATIGHQVTLHSAVIRKNALIGMGSIILD 104          
BLAST of FC924938 vs. ExPASy Swiss-Prot
Match: CAIE_ECO5E (Carnitine operon protein caiE OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=caiE PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 8.106e-14
Identity = 41/101 (40.59%), Postives = 56/101 (55.45%), Query Frame = 1
Query:  235 PVVDKDVFLAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISIGSGTNIQDNSLVHVAKSNLAGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLRD 537
            PVV    F+ PSA +IGDV VG G  I     LRGD   + + +G NIQD  ++H            TI+G+N  +GH A+LHGC +  +A VGM + + D
Sbjct:   11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYTDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMD 105          
The following BLAST results are available for this feature:
BLAST of FC924938 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
Y2881_DICDI1.126e-3146.85Uncharacterized protein DDB_G0288155 OS=Dictyostel... [more]
Y304_METJA1.802e-2150.00Uncharacterized protein MJ0304 OS=Methanocaldococc... [more]
YRDA_SHIFL1.578e-1743.81Protein yrdA OS=Shigella flexneri GN=yrdA PE=3 SV=... [more]
YRDA_ECOLI1.578e-1743.81Protein yrdA OS=Escherichia coli (strain K12) GN=y... [more]
Y3753_PSEAE1.578e-1744.68Uncharacterized protein PA3753 OS=Pseudomonas aeru... [more]
UMP7_ARATH3.887e-1641.58Uncharacterized protein At5g63510, mitochondrial O... [more]
UMP8_ARATH6.631e-1640.59Uncharacterized protein At3g48680, mitochondrial O... [more]
PAAY_ECOLI9.575e-1539.60Phenylacetic acid degradation protein paaY OS=Esch... [more]
YTOA_BACSU6.206e-1437.62Uncharacterized transferase ytoA OS=Bacillus subti... [more]
CAIE_ECO5E8.106e-1440.59Carnitine operon protein caiE OS=Escherichia coli ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP1YM18FM1 TF Citrus clementina cDNA clone KN0AAP1YM18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924938 ID=FC924938; Name=FC924938; organism=Citrus clementina; type=EST; length=539bp
GAGTTGCACGCTTCGCTCGGCCCTTTCATTTCTTCTGTTAAATCGAAGAT
CTTTGAATTTGATTCTGAGCTGACAGCGATGGGAACGCTGGGGAAAGCAA
TATACAGCGTTGGATTCTGGATCCGTGAAACCGGTCAAGCCCTTGATCGT
CTCGGTTGCCGCCTCCAAGGCAACTACTACTTCCAAGAACAACTCTCTAG
GCATCGAACACTCATGAACATTTTTGACAAAGCTCCTGTTGTTGACAAGG
ATGTATTTTTGGCTCCTAGTGCATCCATCATTGGTGATGTTCAGGTGGGC
CGAGGTTCTTCCATTTGGTATGGATGTGTTTTGAGAGGTGATGTTAACAG
CATCAGCATTGGATCTGGAACCAATATACAAGACAATTCCCTTGTTCATG
TGGCAAAATCAAATTTAGCTGGGAAGGTTTTACCTACTATCATTGGAGAT
AATGTTACTGTTGGTCACAGTGCTGTCTTGCATGGATGTACTGTTGAGGA
TGAGGCTTTTGTTGGTATGGGTGCTACTTTGCGGGATGG
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