FC924941

Overview
NameFC924941
Unique NameFC924941
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length575
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15135 contig Ccv1_Contig15135:68..642. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC924941 vs. ExPASy Swiss-Prot
Match: VA726_ARATH (Putative vesicle-associated membrane protein 726 OS=Arabidopsis thaliana GN=VAMP726 PE=2 SV=2)

HSP 1 Score: 300.056 bits (767), Expect = 5.205e-81
Identity = 143/159 (89.94%), Postives = 154/159 (96.86%), Query Frame = 3
Query:   93 MGQQSLIYSFVARGTVILAEYTEFTGNFTSIASQCLQKLPATNNKFTYNCDGHTFNYLVENGFTYCVVAVESAGRQIPIAFLERVKEDFNKRYGGGKAATAVANNLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKI 569
            MGQQSLIYSFVARGTVILAEYTEF GNFTS+A+QCLQKLP++NNKFTYNCDGHTFNYL +NGFTYCVV +ESAGRQIP+AFLERVKEDFNKRYGGGKA+TA AN+LNKEFGSKLKEHMQYC DHPEEISKL+KVKAQV+EVKGVMMENIEKVLDRGEKI
Sbjct:    1 MGQQSLIYSFVARGTVILAEYTEFKGNFTSVAAQCLQKLPSSNNKFTYNCDGHTFNYLADNGFTYCVVVIESAGRQIPMAFLERVKEDFNKRYGGGKASTAKANSLNKEFGSKLKEHMQYCADHPEEISKLSKVKAQVTEVKGVMMENIEKVLDRGEKI 159          
BLAST of FC924941 vs. ExPASy Swiss-Prot
Match: VA725_ARATH (Vesicle-associated membrane protein 725 OS=Arabidopsis thaliana GN=VAMP725 PE=2 SV=2)

HSP 1 Score: 300.056 bits (767), Expect = 5.205e-81
Identity = 146/165 (88.48%), Postives = 158/165 (95.76%), Query Frame = 3
Query:   78 VRVLR-MGQQSLIYSFVARGTVILAEYTEFTGNFTSIASQCLQKLPATNNKFTYNCDGHTFNYLVENGFTYCVVAVESAGRQIPIAFLERVKEDFNKRYGGGKAATAVANNLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKI 569
            +RV R MGQQ+LIYSFVARGTVIL EYTEF GNFT++A+QCLQKLP++NNKFTYNCDGHTFNYLVENGFTYCVVAVES GRQIP+AFLERVKEDFNKRYGGGKA TA AN+LN+EFGSKLKEHMQYCVDHP+EISKLAKVKAQV+EVKGVMMENIEKVLDRGEKI
Sbjct:   60 LRVTRTMGQQNLIYSFVARGTVILVEYTEFKGNFTAVAAQCLQKLPSSNNKFTYNCDGHTFNYLVENGFTYCVVAVESVGRQIPMAFLERVKEDFNKRYGGGKATTAQANSLNREFGSKLKEHMQYCVDHPDEISKLAKVKAQVTEVKGVMMENIEKVLDRGEKI 224          
BLAST of FC924941 vs. ExPASy Swiss-Prot
Match: VA722_ARATH (Vesicle-associated membrane protein 722 OS=Arabidopsis thaliana GN=VAMP722 PE=2 SV=2)

HSP 1 Score: 300.056 bits (767), Expect = 5.205e-81
Identity = 145/159 (91.19%), Postives = 155/159 (97.48%), Query Frame = 3
Query:   93 MGQQSLIYSFVARGTVILAEYTEFTGNFTSIASQCLQKLPATNNKFTYNCDGHTFNYLVENGFTYCVVAVESAGRQIPIAFLERVKEDFNKRYGGGKAATAVANNLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKI 569
            M QQSLIYSFVARGTVIL E+T+F GNFTSIA+QCLQKLP++NNKFTYNCDGHTFNYLVENGFTYCVVAV+SAGRQIP+AFLERVKEDFNKRYGGGKAATA AN+LNKEFGSKLKEHMQYC+DHP+EISKLAKVKAQVSEVKGVMMENIEKVLDRGEKI
Sbjct:    1 MAQQSLIYSFVARGTVILVEFTDFKGNFTSIAAQCLQKLPSSNNKFTYNCDGHTFNYLVENGFTYCVVAVDSAGRQIPMAFLERVKEDFNKRYGGGKAATAQANSLNKEFGSKLKEHMQYCMDHPDEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKI 159          
BLAST of FC924941 vs. ExPASy Swiss-Prot
Match: VA721_ARATH (Vesicle-associated membrane protein 721 OS=Arabidopsis thaliana GN=VAMP721 PE=2 SV=1)

HSP 1 Score: 296.975 bits (759), Expect = 4.406e-80
Identity = 143/159 (89.94%), Postives = 155/159 (97.48%), Query Frame = 3
Query:   93 MGQQSLIYSFVARGTVILAEYTEFTGNFTSIASQCLQKLPATNNKFTYNCDGHTFNYLVENGFTYCVVAVESAGRQIPIAFLERVKEDFNKRYGGGKAATAVANNLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKI 569
            M QQSLIYSFVARGTVIL E+T+F GNFTSIA+QCLQKLP++NNKFTYNCDGHTFNYLVE+GFTYCVVAV+SAGRQIP++FLERVKEDFNKRYGGGKAATA AN+LNKEFGSKLKEHMQYC+DHP+EISKLAKVKAQVSEVKGVMMENIEKVLDRGEKI
Sbjct:    1 MAQQSLIYSFVARGTVILVEFTDFKGNFTSIAAQCLQKLPSSNNKFTYNCDGHTFNYLVEDGFTYCVVAVDSAGRQIPMSFLERVKEDFNKRYGGGKAATAQANSLNKEFGSKLKEHMQYCMDHPDEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKI 159          
BLAST of FC924941 vs. ExPASy Swiss-Prot
Match: VA723_ARATH (Vesicle-associated membrane protein 723 OS=Arabidopsis thaliana GN=VAMP723 PE=2 SV=1)

HSP 1 Score: 259.61 bits (662), Expect = 7.795e-69
Identity = 125/156 (80.13%), Postives = 140/156 (89.74%), Query Frame = 3
Query:   93 MGQQSLIYSFVARGTVILAEYTEFTGNFTSIASQCLQKLPATNNKFTYNCDGHTFNYLVENGFTYCVVAVESAGRQIPIAFLERVKEDFNKRYGGGKAATAVANNLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRG 560
            M QQSL YSF+ARGTVIL E+T+F GNFTS+A+Q L+ LP++NNKFTYNCDGHTFN LVENGFTYCVVAV+SAGR+IP+AFLERVKEDF KRYGG KAAT  AN+LNKEFGS LKEHMQYC+DHP+EIS LAK KAQVSEVK +MMENIEKVL RG
Sbjct:    1 MAQQSLFYSFIARGTVILVEFTDFKGNFTSVAAQYLENLPSSNNKFTYNCDGHTFNDLVENGFTYCVVAVDSAGREIPMAFLERVKEDFYKRYGGEKAATDQANSLNKEFGSNLKEHMQYCMDHPDEISNLAKAKAQVSEVKSLMMENIEKVLARG 156          
BLAST of FC924941 vs. ExPASy Swiss-Prot
Match: VA724_ARATH (Vesicle-associated membrane protein 724 OS=Arabidopsis thaliana GN=VAMP724 PE=2 SV=2)

HSP 1 Score: 245.358 bits (625), Expect = 1.521e-64
Identity = 118/160 (73.75%), Postives = 138/160 (86.25%), Query Frame = 3
Query:   93 MGQQSLIYSFVARGTVILAEYTEFTGNFTSIASQCLQKLPATNN-KFTYNCDGHTFNYLVENGFTYCVVAVESAGRQIPIAFLERVKEDFNKRYGGGKAATAVANNLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKI 569
            MGQ+S IYSFVARGT+ILAEYTEFTGNF SIA+QCLQKLP+++N KFTYNCD HTFN+LVE+G+ YCVVA +S  +QI IAFLERVK DF KRYGGGKA+TA+A +LNKEFG  +KEHM Y VDH EEI KL KVKAQVSEVK +M+ENI+K +DRGE +
Sbjct:    1 MGQESFIYSFVARGTMILAEYTEFTGNFPSIAAQCLQKLPSSSNSKFTYNCDHHTFNFLVEDGYAYCVVAKDSLSKQISIAFLERVKADFKKRYGGGKASTAIAKSLNKEFGPVMKEHMNYIVDHAEEIEKLIKVKAQVSEVKSIMLENIDKAIDRGENL 160          
BLAST of FC924941 vs. ExPASy Swiss-Prot
Match: VA727_ARATH (Vesicle-associated membrane protein 727 OS=Arabidopsis thaliana GN=VAMP727 PE=2 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.168e-56
Identity = 107/178 (60.11%), Postives = 134/178 (75.28%), Query Frame = 3
Query:   93 MGQQSLIYSFVARGTVILAEYTEFTGNFTSIASQCLQKLPATNNKFTYNCDGHTFNYLVENGFTYCVVAVESAGRQIPIAFLERVKEDFNKRYGGG-------------------KAATAVANNLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKI 569
            M Q+ LIYSFVA+GTV+LAE+T ++GNF++IA QCLQKLP  ++K+TY+CDGHTFN+LV+NGF + VVA ES GR +P  FLERVKEDF KRY                          +VA NL++EFG  LKEHMQYC+ HPEE+SKL+K+KAQ++EVKG+MM+NIEKVLDRGEKI
Sbjct:    1 MSQKGLIYSFVAKGTVVLAEHTPYSGNFSTIAVQCLQKLPTNSSKYTYSCDGHTFNFLVDNGFVFLVVADESTGRSVPFVFLERVKEDFKKRYEASIKNDERHPLADEDEDDDLFGDRFSVAYNLDREFGPILKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDRGEKI 178          
BLAST of FC924941 vs. ExPASy Swiss-Prot
Match: VA711_ARATH (Vesicle-associated membrane protein 711 OS=Arabidopsis thaliana GN=VAMP711 PE=2 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 6.249e-26
Identity = 61/156 (39.10%), Postives = 104/156 (66.67%), Query Frame = 3
Query:  105 SLIYSFVARGTVILAEYTEFTGNFTSIASQCLQKLPATN-NKFTYNCDGHTFNYLVENGFTYCVVAVESAGRQIPIAFLERVKEDFNKRYGGGKAATAVANNLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKI 569
            +++Y+ VARGTV+L+E+T  + N ++IA Q L+K+P  N +  +Y+ D + F+    +G T   +A E+AGR+IP AFLE + + F + YG     TA+A  +N+EF   L + + Y  + P    ++ ++K ++++V+GVM+ENI+KVLDRGE++
Sbjct:    2 AILYALVARGTVVLSEFTATSTNASTIAKQILEKVPGDNDSNVSYSQDRYVFHVKRTDGLTVLCMAEETAGRRIPFAFLEDIHQRFVRTYGRA-VHTALAYAMNEEFSRVLSQQIDYYSNDP-NADRINRIKGEMNQVRGVMIENIDKVLDRGERL 155          
BLAST of FC924941 vs. ExPASy Swiss-Prot
Match: VA713_ARATH (Vesicle-associated membrane protein 713 OS=Arabidopsis thaliana GN=VAMP713 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.429e-24
Identity = 59/157 (37.58%), Postives = 104/157 (66.24%), Query Frame = 3
Query:  105 SLIYSFVARGTVILAEYTEFTGNFTSIASQCLQKLPA--TNNKFTYNCDGHTFNYLVENGFTYCVVAVESAGRQIPIAFLERVKEDFNKRYGGGKAATAVANNLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKI 569
            ++I++ VARGTV+L+E++  + N +SI+ Q L+KLP   +++  +Y+ D + F+    +G T   +A E+AGR IP AFL+ + + F K YG     +A A ++N EF   L + M++  + P    +++++K ++S+V+ VM+ENI+KVLDRGE++
Sbjct:    2 AIIFALVARGTVVLSEFSATSTNASSISKQILEKLPGNDSDSHMSYSQDRYIFHVKRTDGLTVLCMADETAGRNIPFAFLDDIHQRFVKTYGRA-IHSAQAYSMNDEFSRVLSQQMEFYSNDPNA-DRMSRIKGEMSQVRNVMIENIDKVLDRGERL 156          
BLAST of FC924941 vs. ExPASy Swiss-Prot
Match: VA714_ARATH (Vesicle-associated membrane protein 714 OS=Arabidopsis thaliana GN=VAMP714 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 8.445e-23
Identity = 55/157 (35.03%), Postives = 100/157 (63.69%), Query Frame = 3
Query:  105 SLIYSFVARGTVILAEYTEFTGNFTSIASQCLQKLPA--TNNKFTYNCDGHTFNYLVENGFTYCVVAVESAGRQIPIAFLERVKEDFNKRYGGGKAATAVANNLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKI 569
            +++Y+ VARGTV+LAE++  TGN  ++  + L+KL    ++ +  ++ D + F+ L  +G T+  +A ++ GR++P ++LE +   F K YG   A  A A  +N EF   L + M++   +P  +  L +V+ +VSE++ VM+ENIEK+++RG++I
Sbjct:    2 AIVYAVVARGTVVLAEFSAVTGNTGAVVRRILEKLSPEISDERLCFSQDRYIFHILRSDGLTFLCMANDTFGRRVPFSYLEEIHMRFMKNYGK-VAHNAPAYAMNDEFSRVLHQQMEFFSSNPS-VDTLNRVRGEVSEIRSVMVENIEKIMERGDRI 156          
The following BLAST results are available for this feature:
BLAST of FC924941 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
VA726_ARATH5.205e-8189.94Putative vesicle-associated membrane protein 726 O... [more]
VA725_ARATH5.205e-8188.48Vesicle-associated membrane protein 725 OS=Arabido... [more]
VA722_ARATH5.205e-8191.19Vesicle-associated membrane protein 722 OS=Arabido... [more]
VA721_ARATH4.406e-8089.94Vesicle-associated membrane protein 721 OS=Arabido... [more]
VA723_ARATH7.795e-6980.13Vesicle-associated membrane protein 723 OS=Arabido... [more]
VA724_ARATH1.521e-6473.75Vesicle-associated membrane protein 724 OS=Arabido... [more]
VA727_ARATH1.168e-5660.11Vesicle-associated membrane protein 727 OS=Arabido... [more]
VA711_ARATH6.249e-2639.10Vesicle-associated membrane protein 711 OS=Arabido... [more]
VA713_ARATH3.429e-2437.58Vesicle-associated membrane protein 713 OS=Arabido... [more]
VA714_ARATH8.445e-2335.03Vesicle-associated membrane protein 714 OS=Arabido... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP1YM23FM1 TF Citrus clementina cDNA clone KN0AAP1YM23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924941 ID=FC924941; Name=FC924941; organism=Citrus clementina; type=EST; length=575bp
CTCTCTCTAATTTTTGTTTTTTCTGCTCCTCATTTTTTTTTGTCAATTGA
ATCTTTCATCTCGAATTTGAATCTAGGGTTAGGGTTTTGAGGATGGGCCA
ACAGTCGTTGATCTATAGCTTCGTGGCTCGAGGCACGGTGATCCTCGCCG
AGTACACTGAGTTCACCGGTAATTTCACGAGCATCGCATCGCAATGTCTC
CAGAAACTTCCCGCTACCAATAACAAGTTCACCTACAACTGCGATGGCCA
CACCTTCAATTACCTCGTTGAGAACGGCTTCACCTATTGTGTGGTTGCTG
TTGAATCTGCTGGCAGGCAAATTCCAATTGCCTTTCTGGAGCGAGTTAAG
GAGGATTTCAACAAGAGATATGGTGGAGGAAAAGCTGCAACGGCTGTTGC
AAATAACCTGAACAAAGAGTTTGGGTCTAAACTAAAGGAGCACATGCAGT
ATTGTGTGGATCATCCTGAAGAGATCAGCAAGCTTGCCAAAGTCAAAGCT
CAGGTTTCTGAAGTCAAGGGGGTTATGATGGAAAATATTGAGAAGGTTCT
TGATCGTGGTGAGAAGATTTAGCTG
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