FC924972

Overview
NameFC924972
Unique NameFC924972
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length657
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7340 contig Ccv1_Contig7340:662..1318. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC924972 vs. ExPASy Swiss-Prot
Match: FTSH8_ARATH (Cell division protease ftsH homolog 8, chloroplastic OS=Arabidopsis thaliana GN=FTSH8 PE=1 SV=1)

HSP 1 Score: 338.961 bits (868), Expect = 1.329e-92
Identity = 172/187 (91.98%), Postives = 176/187 (94.12%), Query Frame = 1
Query:   97 QSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVP 657
            QSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTA+GARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAV           NDEREQTLNQLLTEMDGFEGNTG+IV+AATNRADILDSALLRPGRFDRQV+VDVP
Sbjct:  204 QSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGVIVVAATNRADILDSALLRPGRFDRQVSVDVP 390          
BLAST of FC924972 vs. ExPASy Swiss-Prot
Match: FTSH2_ORYSJ (Cell division protease ftsH homolog 2, chloroplastic OS=Oryza sativa subsp. japonica GN=FTSH2 PE=3 SV=1)

HSP 1 Score: 338.576 bits (867), Expect = 1.735e-92
Identity = 173/187 (92.51%), Postives = 176/187 (94.12%), Query Frame = 1
Query:   97 QSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVP 657
            QS+AKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTA+GARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAV           NDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQV+VDVP
Sbjct:  198 QSRAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVSVDVP 384          
BLAST of FC924972 vs. ExPASy Swiss-Prot
Match: FTSH2_ARATH (Cell division protease ftsH homolog 2, chloroplastic OS=Arabidopsis thaliana GN=FTSH2 PE=1 SV=1)

HSP 1 Score: 337.421 bits (864), Expect = 3.865e-92
Identity = 170/187 (90.91%), Postives = 176/187 (94.12%), Query Frame = 1
Query:   97 QSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVP 657
            QSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTA+GA+IPKGVLL+GPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAV           NDEREQTLNQLLTEMDGFEGNTG+IV+AATNRADILDSALLRPGRFDRQV+VDVP
Sbjct:  211 QSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAVGAKIPKGVLLIGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGVIVVAATNRADILDSALLRPGRFDRQVSVDVP 397          
BLAST of FC924972 vs. ExPASy Swiss-Prot
Match: FTSH_GUITH (Cell division protease ftsH homolog OS=Guillardia theta GN=ftsH PE=3 SV=1)

HSP 1 Score: 317.775 bits (813), Expect = 3.169e-86
Identity = 159/187 (85.03%), Postives = 171/187 (91.44%), Query Frame = 1
Query:   97 QSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVP 657
            +SKA+FQME  TGVTF+DVAGVDEAK++F EVV FLKKPERFTA+GA+IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKEN+PCIVF+DEIDAV           NDEREQTLNQLLTEMDGFEGNTGII+IAATNR D+LD+ALLRPGRFDRQVTVDVP
Sbjct:  157 KSKARFQMEAKTGVTFNDVAGVDEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENSPCIVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIIIAATNRVDVLDAALLRPGRFDRQVTVDVP 343          
BLAST of FC924972 vs. ExPASy Swiss-Prot
Match: FTSH_PORPU (Cell division protease ftsH homolog OS=Porphyra purpurea GN=ftsH PE=3 SV=1)

HSP 1 Score: 310.842 bits (795), Expect = 3.874e-84
Identity = 157/187 (83.96%), Postives = 169/187 (90.37%), Query Frame = 1
Query:   97 QSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVP 657
            +SKA FQME  TGV F+DVAGV+EAK++F EVV FLK+PE FTA+GA+IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAK+NAPCIVF+DEIDAV           NDEREQTLNQLLTEMDGFEGNTG+IVIAATNRADILDSALLRPGRFDRQV+VDVP
Sbjct:  157 KSKALFQMEAKTGVVFNDVAGVEEAKEEFQEVVTFLKQPESFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKDNAPCIVFIDEIDAVGRQRGTGVGGGNDEREQTLNQLLTEMDGFEGNTGVIVIAATNRADILDSALLRPGRFDRQVSVDVP 343          
BLAST of FC924972 vs. ExPASy Swiss-Prot
Match: FTSH1_SYNY3 (Cell division protease ftsH homolog 1 OS=Synechocystis sp. (strain PCC 6803) GN=slr0228 PE=3 SV=1)

HSP 1 Score: 308.531 bits (789), Expect = 1.923e-83
Identity = 152/187 (81.28%), Postives = 167/187 (89.30%), Query Frame = 1
Query:   97 QSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVP 657
            +SKA+FQM+  TGV FDDVAG+DEAK++  EVV FLK+PERFTA+GA+IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPC++F+DEIDAV           NDEREQTLNQLLTEMDGFEGNTGII+IAATNR D+LDSAL+RPGRFDRQV VD P
Sbjct:  156 KSKARFQMDAKTGVMFDDVAGIDEAKEELQEVVTFLKQPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCLIFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFEGNTGIIIIAATNRPDVLDSALMRPGRFDRQVMVDAP 342          
BLAST of FC924972 vs. ExPASy Swiss-Prot
Match: FSTH_PORYE (Cell division protease ftsH homolog OS=Porphyra yezoensis GN=ftsH PE=3 SV=1)

HSP 1 Score: 308.531 bits (789), Expect = 1.923e-83
Identity = 156/187 (83.42%), Postives = 168/187 (89.84%), Query Frame = 1
Query:   97 QSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVP 657
            +SKA FQME  TGV F+DVAGV+EAK++F EVV FLK+PE FTA+GA+IPKGVLLVGPPGTGKTLLAKAIAGEA VPFFSISGSEFVEMFVGVGASRVRDLFKKAK+NAPCIVF+DEIDAV           NDEREQTLNQLLTEMDGFEGNTG+IVIAATNRADILDSALLRPGRFDRQV+VDVP
Sbjct:  157 KSKALFQMEAKTGVVFNDVAGVEEAKEEFQEVVTFLKQPESFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEASVPFFSISGSEFVEMFVGVGASRVRDLFKKAKDNAPCIVFIDEIDAVGRQRGTGVGGGNDEREQTLNQLLTEMDGFEGNTGVIVIAATNRADILDSALLRPGRFDRQVSVDVP 343          
BLAST of FC924972 vs. ExPASy Swiss-Prot
Match: FTSH2_SYNY3 (Cell division protease ftsH homolog 2 OS=Synechocystis sp. (strain PCC 6803) GN=slr1390 PE=3 SV=1)

HSP 1 Score: 306.605 bits (784), Expect = 7.307e-83
Identity = 153/187 (81.82%), Postives = 167/187 (89.30%), Query Frame = 1
Query:   97 QSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVP 657
            +SKA+FQME  TGV FDDVAG+DEAK++  EVV FLK+PE+FTAIGA+IP+GVLL+GPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPC+VF+DEIDAV           NDEREQTLNQLLTEMDGFEGN+GIIVIAATNR D+LD ALLRPGRFDRQVTVD P
Sbjct:  195 KSKARFQMEAKTGVGFDDVAGIDEAKEELQEVVTFLKQPEKFTAIGAKIPRGVLLIGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCLVFIDEIDAVGRQRGVGYGGGNDEREQTLNQLLTEMDGFEGNSGIIVIAATNRPDVLDLALLRPGRFDRQVTVDYP 381          
BLAST of FC924972 vs. ExPASy Swiss-Prot
Match: FTSH6_ARATH (Cell division protease ftsH homolog 6, chloroplastic OS=Arabidopsis thaliana GN=FTSH6 PE=2 SV=1)

HSP 1 Score: 305.834 bits (782), Expect = 1.246e-82
Identity = 150/187 (80.21%), Postives = 167/187 (89.30%), Query Frame = 1
Query:   97 QSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVP 657
            +SKAKFQMEPNTG+TF+DVAGVDEAKQDF E+VEFLK PE+F+A+GA+IPKGVLL GPPGTGKTLLAKAIAGEAGVPFFS+SGSEF+EMFVGVGASR RDLF KAK N+PCIVF+DEIDAV           NDEREQTLNQ+LTEMDGF GNTG+IVIAATNR +ILDSALLRPGRFDRQV+V +P
Sbjct:  208 RSKAKFQMEPNTGITFEDVAGVDEAKQDFEEIVEFLKTPEKFSALGAKIPKGVLLTGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEMFVGVGASRARDLFNKAKANSPCIVFIDEIDAVGRMRGTGIGGGNDEREQTLNQILTEMDGFAGNTGVIVIAATNRPEILDSALLRPGRFDRQVSVGLP 394          
BLAST of FC924972 vs. ExPASy Swiss-Prot
Match: FTSH6_ORYSJ (Cell division protease ftsH homolog 6, chloroplastic OS=Oryza sativa subsp. japonica GN=FTSH6 PE=3 SV=1)

HSP 1 Score: 293.508 bits (750), Expect = 6.401e-79
Identity = 147/188 (78.19%), Postives = 166/188 (88.30%), Query Frame = 1
Query:   97 QSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVXXXXXXXXXXXNDEREQTLNQLLTEMDGF-EGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVP 657
            +SKAKFQMEP TGVTFDDVAGVDEAKQDF E+V+FLK PE+FTA+GAR PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFS+SGSEF+EMFVGVGASRVRDLF +AK +APC+VF+DEIDAV           NDEREQTLNQLLTEMDGF  G+ G++VIAATNR +ILD+ALLRPGRFDR+V+V +P
Sbjct:  205 KSKAKFQMEPKTGVTFDDVAGVDEAKQDFQEIVQFLKFPEKFTAVGARTPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEMFVGVGASRVRDLFDRAKASAPCLVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFGGGDGGVVVIAATNRPEILDAALLRPGRFDRRVSVGLP 392          
The following BLAST results are available for this feature:
BLAST of FC924972 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 385
Match NameE-valueIdentityDescription
FTSH8_ARATH1.329e-9291.98Cell division protease ftsH homolog 8, chloroplast... [more]
FTSH2_ORYSJ1.735e-9292.51Cell division protease ftsH homolog 2, chloroplast... [more]
FTSH2_ARATH3.865e-9290.91Cell division protease ftsH homolog 2, chloroplast... [more]
FTSH_GUITH3.169e-8685.03Cell division protease ftsH homolog OS=Guillardia ... [more]
FTSH_PORPU3.874e-8483.96Cell division protease ftsH homolog OS=Porphyra pu... [more]
FTSH1_SYNY31.923e-8381.28Cell division protease ftsH homolog 1 OS=Synechocy... [more]
FSTH_PORYE1.923e-8383.42Cell division protease ftsH homolog OS=Porphyra ye... [more]
FTSH2_SYNY37.307e-8381.82Cell division protease ftsH homolog 2 OS=Synechocy... [more]
FTSH6_ARATH1.246e-8280.21Cell division protease ftsH homolog 6, chloroplast... [more]
FTSH6_ORYSJ6.401e-7978.19Cell division protease ftsH homolog 6, chloroplast... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP1YN13FM1 TF Citrus clementina cDNA clone KN0AAP1YN13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924972 ID=FC924972; Name=FC924972; organism=Citrus clementina; type=EST; length=657bp
CCACTTATCTTAATTGGAGGGCTGTTCCTTCTCTCAAGGCGTTCATCTGG
TGGAATGGGCGGTCCTGGTGGGCCTGGTTTCCCCCTTGCCTTTGGTCAGT
CCAAAGCTAAATTCCAGATGGAACCAAATACTGGTGTGACATTTGATGAT
GTTGCCGGAGTTGATGAGGCAAAACAAGATTTCATGGAAGTGGTGGAGTT
CCTTAAGAAGCCTGAGAGATTTACTGCTATTGGAGCTCGTATTCCAAAGG
GTGTTCTTCTCGTTGGTCCTCCAGGAACTGGGAAGACTCTTCTTGCCAAG
GCAATTGCTGGTGAAGCCGGTGTTCCATTTTTCTCCATATCAGGTTCTGA
GTTTGTTGAGATGTTTGTTGGTGTTGGTGCATCTAGAGTCCGAGATCTTT
TCAAGAAGGCCAAAGAGAATGCTCCTTGCATTGTATTTGTGGATGAAATT
GATGCCGTTGGAAGACAAAGAGGAACTGGAATTGGAGGAGGGAATGATGA
AAGAGAGCAGACCCTTAACCAGCTTTTGACAGAAATGGATGGTTTTGAGG
GTAATACTGGTATCATTGTGATTGCTGCAACTAACAGGGCGGACATTCTT
GATTCTGCCTTATTGAGGCCTGGACGTTTTGATAGACAGGTTACTGTTGA
TGTTCCT
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