FC924990

Overview
NameFC924990
Unique NameFC924990
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length774
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3754 contig Ccv1_Contig3754:1..774. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC924990 vs. ExPASy Swiss-Prot
Match: SKS1_ARATH (Monocopper oxidase-like protein SKS1 OS=Arabidopsis thaliana GN=SKS1 PE=1 SV=1)

HSP 1 Score: 379.793 bits (974), Expect = 9.022e-105
Identity = 175/240 (72.92%), Postives = 205/240 (85.42%), Query Frame = 3
Query:    3 SASGARPNPQGSFHYGSINITDTYVLRSLPPVTIDGKVRATLNGISFVKPETPIRLADKYNVKGAYKLDFPNTPLTRPPRTDRSLINATYKGFIEIILQNNDTKMQSFHMDGYSFFVVGMDFGIWTESNRNSYNKWDAISKCTTEVYPGAWTAILVSLDNVGVWNLRVENLDRWYLGQETYMKIVNPEENGDTEMGPPDNVLYCGALQSKQKAQKRHHSSATSLVTGIWNLVLTLVMAVS 722
            SASGARPNPQGSFHYG INIT+TY+LRSLPP  I+G +RATLNGISFV P TP+RLAD+  VKGAYKLDFP+ P  RP R DRS+INATYKGFI+++ QNNDTK+QSFH+DGYSFFVVGMDFGIW+E  + SYN WDAIS+ T EVYPG WTA+L+SLDNVGVWN+RVENLDRWYLG+ETYM+I NPEE+G TEM PPDNVLYCGAL++ QK Q  HHS+ATS++ G   L+L +V+  S
Sbjct:  347 SASGARPNPQGSFHYGQINITNTYILRSLPPTIINGALRATLNGISFVNPSTPVRLADRNKVKGAYKLDFPDRPFNRPLRLDRSMINATYKGFIQVVFQNNDTKIQSFHVDGYSFFVVGMDFGIWSEDKKGSYNNWDAISRSTIEVYPGGWTAVLISLDNVGVWNIRVENLDRWYLGEETYMRITNPEEDGKTEMDPPDNVLYCGALKNLQKEQ--HHSAATSILNGHLKLMLLMVLLAS 584          
BLAST of FC924990 vs. ExPASy Swiss-Prot
Match: SKS2_ARATH (Monocopper oxidase-like protein SKS2 OS=Arabidopsis thaliana GN=SKS2 PE=1 SV=1)

HSP 1 Score: 360.918 bits (925), Expect = 4.337e-99
Identity = 169/241 (70.12%), Postives = 201/241 (83.40%), Query Frame = 3
Query:    3 SASGARPNPQGSFHYGSINITDTYVLRSLPPVTIDGKVRATLNGISFVKPETPIRLADKYNVKGAYKLDFPNTPLTRP-PRTDRSLINATYKGFIEIILQNNDTKMQSFHMDGYSFFVVGMDFGIWTESNRNSYNKWDAISKCTTEVYPGAWTAILVSLDNVGVWNLRVENLDRWYLGQETYMKIVNPEENGDTEMGPPDNVLYCGALQSKQKAQKRHHSSAT-SLVTGIWNLVLTLVMAV 719
            SASGARPNPQGSFHYG INIT TY+LRSLPP  I+GK+RATLNGISFV P TP+RLAD + VKG Y LDFP+ PL    PR   S+INATYKGFI++I QNNDTK+QSFH+DGY+F+VV MDFGIW+E   +SYN WDA+++ T EVYPGAWTA+L+SLDNVGVWN+RVENLDRWYLGQETYM+I+NPEENG TEM PP+NV+YCGALQ+ QK Q  HHSSAT S+  G   L+ +++M +
Sbjct:  346 SASGARPNPQGSFHYGQINITRTYILRSLPPTKINGKLRATLNGISFVNPSTPMRLADDHKVKGDYMLDFPDRPLDEKLPRLSSSIINATYKGFIQVIFQNNDTKIQSFHIDGYAFYVVAMDFGIWSEDRNSSYNNWDAVARSTVEVYPGAWTAVLISLDNVGVWNIRVENLDRWYLGQETYMRIINPEENGSTEMDPPENVMYCGALQAMQKEQ--HHSSATKSMTNGQLILIFSMMMVL 584          
BLAST of FC924990 vs. ExPASy Swiss-Prot
Match: SKU5_ARATH (Monocopper oxidase-like protein SKU5 OS=Arabidopsis thaliana GN=SKU5 PE=1 SV=1)

HSP 1 Score: 342.813 bits (878), Expect = 1.222e-93
Identity = 160/238 (67.23%), Postives = 190/238 (79.83%), Query Frame = 3
Query:    3 SASGARPNPQGSFHYGSINITDTYVLRSLPPVTIDGKVRATLNGISFVKPETPIRLADKYNVKGAYKLDFPNTPLTRPPRTDRSLINATYKGFIEIILQNNDTKMQSFHMDGYSFFVVGMDFGIWTESNRNSYNKWDAISKCTTEVYPGAWTAILVSLDNVGVWNLRVENLDRWYLGQETYMKIVNPEENGDTEMGPPDNVLYCGALQSKQKAQKRHHSSATSL-VTGIWNLVLTLVM 713
            SASGARPNPQGSF YGSIN+TD YVLR++PPVTI GK R TLNGISF  P TPIRLADK  VK  YKLDFP  PLT P +   S+IN TY+GF+E++LQNNDTKMQS+HM GY+FFVVGMD+G WTE++R +YNKWD I++ T +VYPGAW+AIL+SLDN G WNLR ENLD WYLGQETY+++VNP+EN  TE G PDNVLYCGAL   QK QK   S++ S+  T +  +V+ LVM
Sbjct:  344 SASGARPNPQGSFKYGSINVTDVYVLRNMPPVTISGKRRTTLNGISFKNPSTPIRLADKLKVKDVYKLDFPKRPLTGPAKVATSIINGTYRGFMEVVLQNNDTKMQSYHMSGYAFFVVGMDYGEWTENSRGTYNKWDGIARSTIQVYPGAWSAILISLDNPGAWNLRTENLDSWYLGQETYVRVVNPDENNKTEFGHPDNVLYCGALSKLQKPQKVSSSASKSIGFTSLSMVVMALVM 581          
BLAST of FC924990 vs. ExPASy Swiss-Prot
Match: ASOL_BRANA (L-ascorbate oxidase homolog OS=Brassica napus GN=Bp10 PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.324e-47
Identity = 90/217 (41.47%), Postives = 141/217 (64.98%), Query Frame = 3
Query:    3 SASGARPNPQGSFHYGSINITDTYVLRSLPPVTIDGKVRATLNGISFVKPETPIRLADKYNVKG-AYKLDF----PNTPLTRPPRTDRSLINATYKGFIEIILQNNDTKMQSFHMDGYSFFVVGMDFGIWTESNRNSYNKWDAISKCTTEVYPGAWTAILVSLDNVGVWNLRVENLDRWYLGQETYMKIVNPEENGDTEMGPPDNVLYCGALQSKQK 638
            +AS ARPNPQGS+HYG INIT T  L +     +DGK+R  LNG+S  +PETP++LA+ + +    +K D     P     +  + + +++N T++ F+E++ +N++  +QS+H+DGYSFF V ++ G WT   R +YN  DA+S+ T +VYP  W AIL++ DN G+WN+R EN +R YLGQ+ Y  +++PE++   E   P+  L CG +++  K
Sbjct:  332 TASAARPNPQGSYHYGKINITRTIKLVNTQG-KVDGKLRFALNGVSHTEPETPLKLAEYFGISDKVFKYDTITDDPTPEQIKNIKIEPNVLNITHRTFVEVVFENHEKSVQSWHLDGYSFFSVAVEPGTWTPEKRKNYNLLDAVSRHTVQVYPKCWAAILLTFDNCGMWNVRSENTERRYLGQQLYASVLSPEKSLRDEYNMPETSLQCGLVKNTPK 547          
BLAST of FC924990 vs. ExPASy Swiss-Prot
Match: ASOL_TOBAC (L-ascorbate oxidase homolog OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 4.126e-41
Identity = 85/213 (39.91%), Postives = 129/213 (60.56%), Query Frame = 3
Query:    3 SASGARPNPQGSFHYGSINITDTY-VLRSLPPVTIDGKVRATLNGISFVKPETPIRLADKYNVKG-AYKLDFPNTPLTRPPRT---DRSLINATYKGFIEIILQNNDTKMQSFHMDGYSFFVVGMDFGIWTESNRNSYNKWDAISKCTTEVYPGAWTAILVSLDNVGVWNLRVENLDRWYLGQETYMKIVNPEENGDTEMGPPDNVLYCGALQ 626
            +AS ARPNPQGS+HYG INIT T  +  S+  V   GK+R  LNGIS    ETP++L + +     A+K D         P       ++ NATY+ F+EII +N++  ++++H+DGYSFF V ++ G W+   R +YN  D +S+   +VYP +W AI+++ DN G+WNLR E  ++ YLG++ Y  +++P  +   E   PDN   CG ++
Sbjct:  334 TASAARPNPQGSYHYGQINITRTIKIFNSMSQV--GGKLRYGLNGISHTNGETPLKLVEYFGATNKAFKYDLMADEAPADPSKLTIATNVKNATYRNFVEIIFENHEKTIRTYHLDGYSFFAVAVEPGRWSPEKRKNYNLVDGLSRNNIQVYPNSWAAIMLTFDNAGMWNLRSEMWEKTYLGEQLYFSVLSPSRSLRDEYNIPDNHPLCGIVK 544          
BLAST of FC924990 vs. ExPASy Swiss-Prot
Match: LAC22_ORYSJ (Laccase-22 OS=Oryza sativa subsp. japonica GN=LAC22 PE=2 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 2.280e-15
Identity = 56/190 (29.47%), Postives = 90/190 (47.37%), Query Frame = 3
Query:   93 PVTIDG-KVRATLNGISFVKPETPIRLADKYNVKGAYKLDFPNTPL-----TRPPRTDRSLINAT------YKGFIEIILQNN---DTKMQSFHMDGYSFFVVGMDFGIWT-ESNRNSYNKWDAISKCTTEVYPGAWTAILVSLDNVGVWNLRVENLDRWYLGQETYMKIVNPEENGDTEMGPPDNVLYC 614
            P  I+G +V  T+N ++F+ P TPI  A  YN+ G +  DFP TPL     T     +   +N T      Y   ++++LQ+      +    H+ G++FFVVG   G +   ++ +++N  D I + T  V  G WTAI    DN GVW +          G +    + N +   +T + PP ++  C
Sbjct:  375 PSCINGTRVVGTINNVTFIMPSTPILQAHYYNIPGVFTEDFPATPLHKFNYTGSGPKNLQTMNGTRVYRLPYNASVQVVLQDTGIISPESHPIHLHGFNFFVVGKGVGNYNPRTSPSTFNLIDPIERNTIGVPTGGWTAIRFRSDNPGVWFMHCHFEVHTSWGLKMAFVVDNGKRPSETLIPPPKDLPQC 564          
BLAST of FC924990 vs. ExPASy Swiss-Prot
Match: LAC2_ORYSJ (Laccase-2 OS=Oryza sativa subsp. japonica GN=LAC2 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.108e-13
Identity = 49/146 (33.56%), Postives = 68/146 (46.58%), Query Frame = 3
Query:  111 KVRATLNGISFVKPETPIRLADKYNVKGAYKLDFPNTPLTRPPRT------------DRSLINATYKGFIEIILQNND---TKMQSFHMDGYSFFVVGMDFGIWTES-NRNSYNKWDAISKCTTEVYPGAWTAILVSLDNVGVWNL 500
            ++ A+LN I+FV P T +  A  Y  KG +  DFP+ P  R   T               L    Y   +E++LQ+ +    +   FH+ GY+FFVVG   G +  + +   YN  D   + T  V  G WTAI    DN GVW L
Sbjct:  379 RLAASLNNITFVMPRTALLQAHYYGQKGVFAADFPDRPPARFNYTGVPLTAGLGTSLGTRLSKIAYNATVELVLQDTNLLSVESHPFHLHGYNFFVVGRGVGNFDPAKDPAKYNLVDPPERNTVGVPAGGWTAIRFRADNPGVWFL 524          
BLAST of FC924990 vs. ExPASy Swiss-Prot
Match: LAC10_ARATH (Laccase-10 OS=Arabidopsis thaliana GN=LAC10 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.383e-12
Identity = 45/143 (31.47%), Postives = 72/143 (50.35%), Query Frame = 3
Query:  111 KVRATLNGISFVKPETPIRLADKYNVKGAYKLDFPNTP-----LTRPPRTDRSLINAT------YKGFIEIILQ---NNDTKMQSFHMDGYSFFVVGMDFGIW-TESNRNSYNKWDAISKCTTEVYPGAWTAILVSLDNVGVW 494
            +V A +N I+F  P+T +  A  +N+ G Y  DFP  P      T  P ++ + + AT      Y   ++++LQ   N   +    H+ G++FFVVG+  G + ++ + N +N  D + + T  V  G W AI    DN GVW
Sbjct:  376 RVVAAINNITFKMPKTALLQAHYFNLTGIYTTDFPAKPRRVFDFTGKPPSNLATMKATKLYKLPYNSTVQVVLQDTGNVAPENHPIHLHGFNFFVVGLGTGNYNSKKDSNKFNLVDPVERNTVGVPSGGWAAIRFRADNPGVW 518          
BLAST of FC924990 vs. ExPASy Swiss-Prot
Match: LAC11_ARATH (Laccase-11 OS=Arabidopsis thaliana GN=LAC11 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.864e-12
Identity = 57/201 (28.36%), Postives = 90/201 (44.78%), Query Frame = 3
Query:   93 PVTIDG-KVRATLNGISFVKPETPIRLADKYNVKGAYKLDFPNTPLTRPPR----------------TDRSLINATYKGFIEIILQNND---TKMQSFHMDGYSFFVVGMDFGIW-TESNRNSYNKWDAISKCTTEVYPGAWTAILVSLDNVGVW--NLRVENLDRWYLGQETYMKIVNPEENGDTE----MGPPDNVLYC 614
            P  ++G  + A++N I+F+ P+T +  A   N+ G ++ DFP+    RPP+                T   L    +   IE++LQ+ +    +   FH+ GY+FFVVG   G +  + +   +N  D   + T  V  G W AI    DN GVW  +  +E    W L      K+    ENG+T     + PP +   C
Sbjct:  367 PTCVNGTNLAASINNITFIMPKTALLKAHYSNISGVFRTDFPD----RPPKAFNYTGVPLTANLGTSTGTRLSRVKFNTTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGVGNFDPKKDPAKFNLVDPPERNTVGVPTGGWAAIRFRADNPGVWFMHCHLEVHTMWGL------KMAFVVENGETPELSVLPPPKDYPSC 557          
BLAST of FC924990 vs. ExPASy Swiss-Prot
Match: LAC7_ORYSJ (Laccase-7 OS=Oryza sativa subsp. japonica GN=LAC7 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.997e-11
Identity = 51/162 (31.48%), Postives = 76/162 (46.91%), Query Frame = 3
Query:   54 INITDTYVLRSLP----PVTIDGK-VRATLNGISFVKPETPIRLADKYN-VKGAYKLDFPN------TPLTRPPRTDRSLINATYKGFIEIILQNND---TKMQSFHMDGYSFFVVGMDFGIWTESNRNSYNKWDAISKCTTEVYPGAWTAILVSLDNVGVW 494
            +N+T    L  LP      +  GK V A +NG+SF  P     L  ++N   G Y  DFP+      TP+    +  R   N+T    +EI+LQN     ++    H+ G++FFV+    G +T  N + YN  D +S+ T  V  G W  I    +N G+W
Sbjct:  362 VNMTIELGLGQLPCDSTQSSCSGKSVAAAMNGVSFRLPSQMSLLEAQFNRTPGVYTADFPDAPQPSGTPMVEGTKVRRLKYNST----VEIVLQNPTAFPSENHPIHLHGFNFFVLAQGLGNFTPGNVSGYNLVDPVSRNTLAVPTGGWAVIRFVANNPGMW 519          
The following BLAST results are available for this feature:
BLAST of FC924990 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
SKS1_ARATH9.022e-10572.92Monocopper oxidase-like protein SKS1 OS=Arabidopsi... [more]
SKS2_ARATH4.337e-9970.12Monocopper oxidase-like protein SKS2 OS=Arabidopsi... [more]
SKU5_ARATH1.222e-9367.23Monocopper oxidase-like protein SKU5 OS=Arabidopsi... [more]
ASOL_BRANA1.324e-4741.47L-ascorbate oxidase homolog OS=Brassica napus GN=B... [more]
ASOL_TOBAC4.126e-4139.91L-ascorbate oxidase homolog OS=Nicotiana tabacum P... [more]
LAC22_ORYSJ2.280e-1529.47Laccase-22 OS=Oryza sativa subsp. japonica GN=LAC2... [more]
LAC2_ORYSJ8.108e-1333.56Laccase-2 OS=Oryza sativa subsp. japonica GN=LAC2 ... [more]
LAC10_ARATH1.383e-1231.47Laccase-10 OS=Arabidopsis thaliana GN=LAC10 PE=2 S... [more]
LAC11_ARATH6.864e-1228.36Laccase-11 OS=Arabidopsis thaliana GN=LAC11 PE=2 S... [more]
LAC7_ORYSJ1.997e-1131.48Laccase-7 OS=Oryza sativa subsp. japonica GN=LAC7 ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YA11FM1 TF Citrus clementina cDNA clone KN0AAP8YA11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC924990 ID=FC924990; Name=FC924990; organism=Citrus clementina; type=EST; length=774bp
CATCTGCAAGTGGAGCTCGTCCAAATCCGCAGGGTTCTTTTCATTATGGT
TCAATCAATATTACTGATACATATGTGTTAAGGAGTTTGCCACCTGTGAC
AATAGATGGGAAAGTTCGTGCTACGCTGAATGGGATTTCCTTTGTGAAAC
CCGAAACACCAATCAGGCTTGCTGATAAGTACAATGTGAAGGGAGCTTAT
AAGCTAGATTTTCCAAATACGCCACTGACTAGACCTCCCAGGACGGACAG
ATCTCTTATTAATGCTACATACAAGGGATTTATAGAAATCATATTGCAGA
ACAATGACACCAAGATGCAGAGCTTTCACATGGATGGTTATTCATTTTTT
GTTGTTGGGATGGACTTCGGTATATGGACAGAAAGCAACAGAAATAGTTA
TAATAAGTGGGACGCGATTTCTAAGTGTACAACTGAGGTTTATCCTGGGG
CATGGACTGCAATCCTTGTTTCTCTCGATAATGTTGGAGTATGGAATCTT
CGAGTAGAGAACCTTGACAGATGGTATCTAGGCCAAGAAACATATATGAA
AATTGTCAATCCAGAGGAAAATGGCGATACCGAGATGGGACCTCCTGATA
ATGTTTTATATTGTGGTGCCCTTCAAAGCAAGCAGAAGGCACAAAAACGT
CATCACTCTTCTGCAACATCACTTGTAACTGGAATCTGGAATCTCGTCCT
TACTTTGGTGATGGCAGTCTCTGCTGGAATTTTGCTCTGCTGATAGGTAA
CGAACTGAAAAAAAAAAAAAAAAA
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