FC925002

Overview
NameFC925002
Unique NameFC925002
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC925002_ssr427 microsatellite FC925002_ssr427:427..438. BLAST: Citrus ESTs to Prunus persica proteins V1
FC925002_ssr34 microsatellite FC925002_ssr34:34..65. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig13784 contig Ccv1_Contig13784:16..736. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC925002 vs. ExPASy Swiss-Prot
Match: COGT2_ARATH (Cytokinin-O-glucosyltransferase 2 OS=Arabidopsis thaliana GN=UGT85A1 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.483e-13
Identity = 54/196 (27.55%), Postives = 89/196 (45.41%), Query Frame = 2 
Query:  140 HVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVT----EEWLGFIGSQSKP--HNIRFRTLPNTIP-SEHGRANDFAGFLEAVFTKMEAPFXXXXXXXXXXXXXQPPAALTAIIADTYLPWVVDVGNRRNIPVASLWTMSALVFSVFHHFELLERNGHFPFD----LSEK--GDELVDYIPGLEPTKLADFPT 688
            HV+ +PYP +GH+NPMM + KLL +R     +TFV T      +L   GS +     + RF ++ + +P ++     D     E+      APF              P   ++ I++D  + + +DV     +P    WT S   F  + HF L    G  P      L+++   D ++D+IP ++  KL D P+
Sbjct:   13 HVVCVPYPAQGHINPMMRVAKLLHAR--GFYVTFVNTVYNHNRFLRSRGSNALDGLPSFRFESIADGLPETDMDATQDITALCESTMKNCLAPFRELLQRINAGDNVPP---VSCIVSDGCMSFTLDVAEELGVPEVLFWTTSGCAFLAYLHFYLFIEKGLCPLKDESYLTKEYLEDTVIDFIPTMKNVKLKDIPS 203
The following BLAST results are available for this feature:
BLAST of FC925002 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
COGT2_ARATH2.483e-1327.55Cytokinin-O-glucosyltransferase 2 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP6YP07FM1 TF Citrus clementina cDNA clone KN0AAP6YP07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925002 ID=FC925002; Name=FC925002; organism=Citrus clementina; type=EST; length=721bp
CATTCTGTCTCTGTGTTTTACTCTTGCAAGCCACCAGCCAGCCAGCCAGC
CAGCCAGCCAGCCAGCTGAATTAGCTCCCATATATCAAGTGGTACTCATG
GATCCTCATCCTGCCCAAGTAAAACCAACCAGCCTCTGCCACGTGCTGGC
CCTGCCTTATCCCGGGAGAGGACACGTCAACCCCATGATGAACATTTGCA
AGCTCTTAGTTTCAAGGCAGCCTGATATCCTCATCACCTTTGTTGTGACA
GAAGAGTGGCTCGGATTCATTGGCTCACAGAGCAAGCCCCATAACATTCG
ATTCCGTACATTGCCTAATACCATACCCTCAGAGCATGGGCGCGCCAATG
ACTTTGCCGGCTTCCTGGAGGCTGTGTTTACAAAGATGGAAGCTCCTTTT
GAAGAGCTCCTTGATCGTCTGCTTCTTGATGATGATGAGCAACCTCCGGC
GGCACTGACTGCTATTATAGCAGATACTTACTTGCCTTGGGTTGTTGACG
TTGGCAACCGCAGGAACATTCCCGTAGCTTCCTTGTGGACGATGTCTGCA
CTTGTGTTCTCTGTTTTTCATCACTTTGAGCTTCTTGAAAGAAACGGCCA
TTTTCCGTTTGATCTCTCAGAAAAGGGAGACGAGCTTGTGGACTACATCC
CAGGACTTGAACCGACGAAGTTGGCTGATTTTCCTACAATTTTTCACGGA
GCTGGGAGAAAAATTTGCATG
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