FC925008

Overview
NameFC925008
Unique NameFC925008
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length640
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC925008_ssr94 microsatellite FC925008_ssr94:94..111. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15356 contig Ccv1_Contig15356:30..669. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925008 vs. ExPASy Swiss-Prot
Match: 6PGD_CHLPN (6-phosphogluconate dehydrogenase, decarboxylating OS=Chlamydia pneumoniae GN=gnd PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 4.585e-42
Identity = 82/163 (50.31%), Postives = 118/163 (72.39%), Query Frame = 1
Query:  151 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQV 639
            T IGL GLAVMG+NL LN+ + GF +SVYNRT  K  + ++      +L   GF   E FVNS+++PR I+++++AG PVD++I  L  ++E GD IIDGGN +++++ERR K + E G+L+LG+G+SGGEEGARHGPS+MPGG+ EA+  +  I   +AA+V
Sbjct:    3 TNIGLIGLAVMGKNLVLNMIDHGFSVSVYNRTPEKTRDFLKEYPNHREL--VGFESLEDFVNSLERPRKIMLMIQAGKPVDQSIHALLPFLEPGDVIIDGGNSYFKDSERRCKELQEKGILFLGVGISGGEEGARHGPSIMPGGNPEAWPLVAPIFQSIAAKV 163          
BLAST of FC925008 vs. ExPASy Swiss-Prot
Match: 6PGD_CHLMU (6-phosphogluconate dehydrogenase, decarboxylating OS=Chlamydia muridarum GN=gnd PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 3.881e-41
Identity = 85/162 (52.47%), Postives = 119/162 (73.46%), Query Frame = 1
Query:  157 IGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGD-LPLFGFRDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQV 639
            IGL GLAVMG+NL LN+ + GF +SVYNR+  K +E +   K+ G+ + L GF   E FV S+++PR I++++KAGAPVDE I +L  ++E+GD +IDGGN +Y ++ERR   + + G+L++GMGVSGGEEGAR GPS+MPGG+ EA+  I  I   +AAQV
Sbjct:    6 IGLIGLAVMGKNLVLNMIDHGFAVSVYNRSPEKTEEFL---KEHGENISLQGFTAIEEFVQSLKRPRKIMIMIKAGAPVDEMISSLLPFLEEGDILIDGGNSYYLDSERRYIDLKKKGILFVGMGVSGGEEGARKGPSIMPGGNIEAWPVIAPIFQSIAAQV 164          
BLAST of FC925008 vs. ExPASy Swiss-Prot
Match: 6PGD_CHLTR (6-phosphogluconate dehydrogenase, decarboxylating OS=Chlamydia trachomatis GN=gnd PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.926e-40
Identity = 82/163 (50.31%), Postives = 119/163 (73.01%), Query Frame = 1
Query:  151 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQV 639
            T IGL GLAVMG+NL LN+ + GF +SVYNR+ +K +E ++   + G L   GF   + FV S+++PR I++++KAGAPVDE I +L  ++E+GD +IDGGN +Y ++E+R   + + G+L++GMGVSGGEEGAR GPS+MPGG+ +A+  I  I   +AAQV
Sbjct:    5 TDIGLIGLAVMGKNLVLNMVDHGFSVSVYNRSPAKTEEFLKDHGESGALQ--GFTTIQEFVQSLKRPRKIMIMIKAGAPVDEMIASLLPFLEEGDILIDGGNSYYLDSEQRYVDLKKEGILFVGMGVSGGEEGARKGPSIMPGGNIDAWPAIAPIFQSIAAQV 165          
BLAST of FC925008 vs. ExPASy Swiss-Prot
Match: 6PGD_SCHPO (6-phosphogluconate dehydrogenase, decarboxylating OS=Schizosaccharomyces pombe GN=SPBC660.16 PE=1 SV=2)

HSP 1 Score: 164.851 bits (416), Expect = 3.285e-40
Identity = 87/165 (52.73%), Postives = 115/165 (69.70%), Query Frame = 1
Query:  142 KQLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQ 636
            K++   GL GLAVMGQNL LN A+KGF +  YNRTTS+VDE +    K   +   G    E FV+ ++KPRV I+LVKAG PVD  I+ L+  +EKGD I+DGGN  Y +T RR + +A+ G+L++G GVSGGEEGAR+GPSLMPGG+  A+  I+ I   +AA+
Sbjct:    4 KEVADFGLIGLAVMGQNLILNGADKGFTVCCYNRTTSRVDEFLANEAKGKSI--VGAHSLEEFVSKLKKPRVCILLVKAGKPVDYLIEGLAPLLEKGDIIVDGGNSHYPDTTRRCEELAKKGILFVGSGVSGGEEGARYGPSLMPGGNPAAWPRIKPIFQTLAAK 166          
BLAST of FC925008 vs. ExPASy Swiss-Prot
Match: 6PGD2_BACSU (6-phosphogluconate dehydrogenase, decarboxylating 2 OS=Bacillus subtilis GN=yqjI PE=1 SV=4)

HSP 1 Score: 164.851 bits (416), Expect = 3.285e-40
Identity = 81/162 (50.00%), Postives = 119/162 (73.46%), Query Frame = 1
Query:  154 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQV 639
            +IG+ GLAVMG+NLALNI  +GF +SVYNR++SK +E ++ AK +    + G    E FV S++ PR I+++VKAG   D TI++L  ++EK D +IDGGN +Y++T+RR K +AE G+ ++G GVSGGEEGA  GPS+MPGG  EA++ ++ IL  ++A+V
Sbjct:    5 QIGVIGLAVMGKNLALNIESRGFSVSVYNRSSSKTEEFLQEAKGKN---VVGTYSIEEFVQSLETPRKILLMVKAGTATDATIQSLLPHLEKDDILIDGGNTYYKDTQRRNKELAESGIHFIGTGVSGGEEGALKGPSIMPGGQKEAHELVKPILEAISAKV 163          
BLAST of FC925008 vs. ExPASy Swiss-Prot
Match: 6PGD_SYNE7 (6-phosphogluconate dehydrogenase, decarboxylating OS=Synechococcus elongatus (strain PCC 7942) GN=gnd PE=1 SV=4)

HSP 1 Score: 163.31 bits (412), Expect = 9.559e-40
Identity = 84/165 (50.91%), Postives = 116/165 (70.30%), Query Frame = 1
Query:  148 LTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETV-ERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQV 639
            L + GL GLAVMG+NLALNI   GF ++VYNRT  K +  + +RA+ +  +P +   D   FV S+++PR I+++VKAG PVD  ++ L   ++ GD IIDGGN  + +TERR K +  LGL ++GMGVSGGEEGA +GPSLMPGG+  AY+ +E I+  +AAQV
Sbjct:    3 LQQFGLIGLAVMGENLALNIERNGFSLTVYNRTAEKTEAFMADRAQGKNIVPAYSLED---FVASLERPRRILVMVKAGGPVDAVVEQLKPLLDPGDLIIDGGNSLFTDTERRVKDLEALGLGFMGMGVSGGEEGALNGPSLMPGGTQAAYEAVEPIVRSIAAQV 164          
BLAST of FC925008 vs. ExPASy Swiss-Prot
Match: 6PGD_HAEIN (6-phosphogluconate dehydrogenase, decarboxylating OS=Haemophilus influenzae GN=gnd PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 9.559e-40
Identity = 81/160 (50.62%), Postives = 115/160 (71.88%), Query Frame = 1
Query:  157 IGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQ 636
            IG+ GLAVMGQNL LN+ + GF +  YNRTTSKVDE ++ A K  ++   G    E     ++KPR ++++V+AG  VD+ I+ L  ++E+GD IIDGGN  Y +T RR KA+AE G+ ++G GVSGGEEGARHGPS+MPGG+ EA++Y++ I   ++A+
Sbjct:    7 IGVIGLAVMGQNLILNMNDHGFKVVAYNRTTSKVDEFLQGAAKGTNI--IGAYSLEDLAAKLEKPRKVMLMVRAGDVVDQFIEALLPHLEEGDIIIDGGNSNYPDTNRRVKALAEKGIRFIGSGVSGGEEGARHGPSIMPGGNQEAWQYVKPIFQAISAK 164          
BLAST of FC925008 vs. ExPASy Swiss-Prot
Match: 6PGD_BUCAP (6-phosphogluconate dehydrogenase, decarboxylating OS=Buchnera aphidicola subsp. Schizaphis graminum GN=gnd PE=3 SV=2)

HSP 1 Score: 163.31 bits (412), Expect = 9.559e-40
Identity = 76/161 (47.20%), Postives = 116/161 (72.05%), Query Frame = 1
Query:  154 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQ 636
            ++G+ G+AVMG+NLALNI  K + +S++NRT S  +E +   K++   P F  +D   FVNS++KPR I+++VK+G P DETI+ +  Y+ KGD +IDGGN +Y+++ RR   + + G+ ++GMGVSGGE GA +GPS+MPGGS EAY  +  +L K++A+
Sbjct:    5 QVGVIGMAVMGRNLALNIESKKYTVSIFNRTQSVTEEVINNNKEKKIFPYFSIKD---FVNSLRKPRCILLMVKSGQPTDETIQFILPYLNKGDILIDGGNTFYKDSIRRSNDLMKCGINFIGMGVSGGELGALNGPSIMPGGSREAYDLVSSMLKKISAK 162          
BLAST of FC925008 vs. ExPASy Swiss-Prot
Match: 6PGD_CANAL (6-phosphogluconate dehydrogenase, decarboxylating OS=Candida albicans GN=DOR14 PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.248e-39
Identity = 83/160 (51.88%), Postives = 115/160 (71.88%), Query Frame = 1
Query:  157 IGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQ 636
            IGL GLAVMGQNL LN+A+ G+ +  YNRTT+KVD  +E   K   +   G    +  V+ +++PR I++LVKAGAPVDE I  L  Y+E+GD IIDGGN  + ++ RR + +A+ G+L++G GVSGGEEGAR GPSLMPGG+ +A+ +I++I   VAA+
Sbjct:   31 IGLIGLAVMGQNLILNMADHGYTVVAYNRTTAKVDRFLENEAKGKSI--LGAHSIKELVDQLKRPRRIMLLVKAGAPVDEFINQLLPYLEEGDIIIDGGNSHFPDSNRRYEELAKKGILFVGSGVSGGEEGARTGPSLMPGGNEKAWPHIKEIFQDVAAK 188          
BLAST of FC925008 vs. ExPASy Swiss-Prot
Match: 6PGD_SYNY3 (6-phosphogluconate dehydrogenase, decarboxylating OS=Synechocystis sp. (strain PCC 6803) GN=gnd PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.130e-39
Identity = 84/160 (52.50%), Postives = 111/160 (69.38%), Query Frame = 1
Query:  160 GLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGDLPLFGFRDPESFVNSIQKPRVIIMLVKAGAPVDETIKTLSAYMEKGDCIIDGGNEWYENTERREKAMAELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQV 639
            G+ GLAVMG+NLALN+  +GFPI+V+NR+ +K ++ +       D+        E FV  +++PR I+++VKAG PVD  I  L   +E+GD IIDGGN  YE+TERR K +   GL ++GMGVSGGEEGA  GPSLMPGG+  AYK +E IL K+AAQV
Sbjct:   14 GVIGLAVMGENLALNVESRGFPIAVFNRSPNKTEKFMAERAVGKDIK--AAYTVEEFVQLLERPRKILVMVKAGGPVDAVINELKPLLEEGDMIIDGGNSLYEDTERRTKDLEATGLGFVGMGVSGGEEGALLGPSLMPGGTPAAYKELEPILTKIAAQV 171          
The following BLAST results are available for this feature:
BLAST of FC925008 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
6PGD_CHLPN4.585e-4250.316-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_CHLMU3.881e-4152.476-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_CHLTR1.926e-4050.316-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_SCHPO3.285e-4052.736-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD2_BACSU3.285e-4050.006-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_SYNE79.559e-4050.916-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_HAEIN9.559e-4050.636-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_BUCAP9.559e-4047.206-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_CANAL1.248e-3951.886-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_SYNY32.130e-3952.506-phosphogluconate dehydrogenase, decarboxylating ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP1YO06FM1 TF Citrus clementina cDNA clone KN0AAP1YO06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925008 ID=FC925008; Name=FC925008; organism=Citrus clementina; type=EST; length=640bp
TTATGTTTATAGAGTCTCTGCTCTGCTAATCCCAGATCACATTTTGGGTT
GATTTGTCTGAATTTTCATTCTCTTGTTTTTGCATCAGATTTTAGAAGAA
GAAGAAGAAGAATTTTTTAAGAGGAAGATATGGTTGAGGGCAAACAACTT
ACGAGAATAGGCCTTGCTGGTCTGGCGGTCATGGGCCAAAATCTCGCCCT
CAACATTGCTGAAAAAGGCTTTCCCATTTCTGTTTATAACCGAACTACCT
CCAAAGTTGATGAGACAGTTGAAAGAGCTAAAAAGGAGGGAGATTTGCCT
TTATTTGGTTTCCGTGATCCTGAATCATTTGTCAATTCAATCCAAAAACC
TCGGGTGATAATCATGCTTGTTAAAGCTGGTGCACCTGTTGACGAAACCA
TTAAGACCCTCTCTGCTTACATGGAGAAAGGTGATTGCATCATTGATGGG
GGTAATGAGTGGTATGAGAACACCGAGAGAAGAGAGAAAGCCATGGCTGA
ATTGGGTTTGCTCTACCTTGGAATGGGAGTTTCAGGTGGTGAAGAGGGTG
CAAGACATGGTCCTTCTTTGATGCCTGGAGGATCATTCGAGGCTTACAAG
TATATTGAAGACATTCTTCTAAAGGTCGCGGCTCAAGTTC
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