FC925012

Overview
NameFC925012
Unique NameFC925012
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length731
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14975 contig Ccv1_Contig14975:4..734. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925012 vs. ExPASy Swiss-Prot
Match: IMP3_MOUSE (U3 small nucleolar ribonucleoprotein protein IMP3 OS=Mus musculus GN=Imp3 PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.515e-47
Identity = 86/166 (51.81%), Postives = 124/166 (74.70%), Query Frame = 1
Query:  103 VNFLEWK-REGGHREAMIMQRYHVTGRDDYKKYSSLCGMVQNLVNILKQMDPRDPFRIEMTDMLLEKLYNMGVIPSRKSLALCDHLSVSSFCRRRLATILVRLKFAEHVREAVTYIEHGHIRVGPETVTDPAFLVTGNMEDFITWVDTSKIKRKVLEYNDKVDDYD 597
            V+FL W+  +    E  +++RY +  R++Y +Y+ L   V+ L   L+ +  RDPFR+  +  LL+KLY MG++P+R SL LCD +S SSFCRRRL T+L++L+ A+H++ AV ++E GH+RVGP+ VTDPAFLVT +MEDF+TWVD+SKIKR VLEYN++ DD+D
Sbjct:   16 VDFLNWEVTDHNLHELRVLRRYRLQRREEYTRYNQLSRAVRELARRLRDLPERDPFRVRASAALLDKLYAMGLVPTRGSLELCDSVSASSFCRRRLPTLLLKLRMAQHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSSKIKRHVLEYNEERDDFD 181          
BLAST of FC925012 vs. ExPASy Swiss-Prot
Match: IMP3_YEAST (U3 small nucleolar ribonucleoprotein protein IMP3 OS=Saccharomyces cerevisiae GN=IMP3 PE=1 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.023e-46
Identity = 82/166 (49.40%), Postives = 123/166 (74.10%), Query Frame = 1
Query:  103 VNFLEWKREGGHREAMIMQRYHVTGRDDYKKYSSLCGMVQNLVNILKQMDPRDPFRIEMTDMLLEKLYNMGVIPSRKSLA-LCDHLSVSSFCRRRLATILVRLKFAEHVREAVTYIEHGHIRVGPETVTDPAFLVTGNMEDFITWVDTSKIKRKVLEYNDKVDDYD 597
            V+FLEWK++ GHR+  +M+ YH+  R+DY KY+ +CG ++ L N L  + P DPFR +   +LL+KLY MGV+ ++  ++ L + ++VS+ CRRRL  I+ RLK AE +++AV +IE GH+RVGP  + DPA+LVT NMED++TWVD SKIK+ +L Y +++DD+D
Sbjct:   16 VDFLEWKQDQGHRDTQVMRTYHIQNREDYHKYNRICGDIRRLANKLSLLPPTDPFRRKHEQLLLDKLYAMGVLTTKSKISDLENKVTVSAICRRRLPVIMHRLKMAETIQDAVKFIEQGHVRVGPNLINDPAYLVTRNMEDYVTWVDNSKIKKTLLRYRNQIDDFD 181          
BLAST of FC925012 vs. ExPASy Swiss-Prot
Match: IMP3_SCHPO (U3 small nucleolar ribonucleoprotein protein imp3 OS=Schizosaccharomyces pombe GN=imp3 PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.278e-46
Identity = 81/169 (47.93%), Postives = 127/169 (75.15%), Query Frame = 1
Query:  103 VNFLEWKRE-GGHREAMIMQRYHVTGRDDYKKYSSLCGMVQNLVNILKQMDPRDPFRIEMTDMLLEKLYNMGVIPSRKSLALCDH-LSVSSFCRRRLATILVRLKFAEHVREAVTYIEHGHIRVGPETVTDPAFLVTGNMEDFITWVDTSKIKRKVLEYNDKVDDYDAM 603
            V+FL +K +   HR+ M+M+RYH++ R++Y+KY+ +CG  + L + L  +DP DPFR++  ++LLEKL++MG++PS+  ++  ++  +VS+ CRRRL  I+ +L+ ++ V EA   IE GH+RVGP  +TDPA+LVT ++EDF+TW DTSKIKR + +YNDK+DDYD +
Sbjct:   15 VDFLNYKNDDNNHRDVMVMRRYHISKREEYQKYNIICGKFRQLAHRLSLLDPTDPFRLQYENLLLEKLFDMGILPSKSKMSDIENKANVSAICRRRLPVIMCKLRMSQVVSEATRLIEQGHVRVGPHVITDPAYLVTRSLEDFVTWTDTSKIKRTIAKYNDKLDDYDLL 183          
BLAST of FC925012 vs. ExPASy Swiss-Prot
Match: IMP3_BOVIN (U3 small nucleolar ribonucleoprotein protein IMP3 OS=Bos taurus GN=IMP3 PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.278e-46
Identity = 84/166 (50.60%), Postives = 123/166 (74.10%), Query Frame = 1
Query:  103 VNFLEWK-REGGHREAMIMQRYHVTGRDDYKKYSSLCGMVQNLVNILKQMDPRDPFRIEMTDMLLEKLYNMGVIPSRKSLALCDHLSVSSFCRRRLATILVRLKFAEHVREAVTYIEHGHIRVGPETVTDPAFLVTGNMEDFITWVDTSKIKRKVLEYNDKVDDYD 597
            V+FL W+  +    E  +++RY +  R+DY +Y+ L   V+ L   L+ +  RDPFR+  +  LL+KLY +G++P+R S  LCD ++ SSFCRRRL T+L++L+ A+H++ AV ++E GH+RVGP+ VTDPAFLVT +MEDF+TWVD+SKIKR VLEYN++ DD+D
Sbjct:   16 VDFLNWEVTDHNLHELRVLRRYRLQRREDYTRYNQLSRAVRELARRLRDLPERDPFRVRSSAALLDKLYALGLVPTRGSQELCDFVTASSFCRRRLPTVLLKLRMAQHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSSKIKRHVLEYNEERDDFD 181          
BLAST of FC925012 vs. ExPASy Swiss-Prot
Match: IMP3_HUMAN (U3 small nucleolar ribonucleoprotein protein IMP3 OS=Homo sapiens GN=IMP3 PE=1 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.886e-46
Identity = 84/166 (50.60%), Postives = 123/166 (74.10%), Query Frame = 1
Query:  103 VNFLEWK-REGGHREAMIMQRYHVTGRDDYKKYSSLCGMVQNLVNILKQMDPRDPFRIEMTDMLLEKLYNMGVIPSRKSLALCDHLSVSSFCRRRLATILVRLKFAEHVREAVTYIEHGHIRVGPETVTDPAFLVTGNMEDFITWVDTSKIKRKVLEYNDKVDDYD 597
            V+FL W+  +    E  +++RY +  R+DY +Y+ L   V+ L   L+ +  RD FR+  +  LL+KLY +G++P+R SL LCD ++ SSFCRRRL T+L++L+ A+H++ AV ++E GH+RVGP+ VTDPAFLVT +MEDF+TWVD+SKIKR VLEYN++ DD+D
Sbjct:   16 VDFLNWEVTDHNLHELRVLRRYRLQRREDYTRYNQLSRAVRELARRLRDLPERDQFRVRASAALLDKLYALGLVPTRGSLELCDFVTASSFCRRRLPTVLLKLRMAQHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSSKIKRHVLEYNEERDDFD 181          
BLAST of FC925012 vs. ExPASy Swiss-Prot
Match: YS4L_PNECA (Putative 40S ribosomal protein S4-like (Fragment) OS=Pneumocystis carinii GN=RBP PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.636e-36
Identity = 73/153 (47.71%), Postives = 107/153 (69.93%), Query Frame = 1
Query:  106 NFLEWKRE-GGHREAMIMQRYHVTGRDDYKKYSSLCGMVQNLVNILKQMDPRDPFRIEMTDMLLEKLYNMGVIPSRKSLALCDH-LSVSSFCRRRLATILVRLKFAEHVREAVTYIEHGHIRVGPETVTDPAFLVTGNMEDFITWVDTSKIKR 558
            +FL +K++   HR+  +++RYH+  R+DY KY+ L G++  + N L  ++P D F      MLL KL++M ++ S   L+  ++ L+VS+FCRRRL  ++ RLK  E V  +V Y+EHGH+RVGPE +TDPAF VT NMEDF+TWVD+SKI+R
Sbjct:   16 DFLNYKKDDNNHRDVNVIRRYHIPQREDYFKYNQLVGLLLGIANKLSLLEPTDSFGNLHKKMLLGKLFDMALLTSTPKLSDVENKLTVSAFCRRRLPVVMCRLKMCETVSTSVKYVEHGHVRVGPEVITDPAFFVTRNMEDFVTWVDSSKIRR 168          
BLAST of FC925012 vs. ExPASy Swiss-Prot
Match: YS4L_CAEEL (Putative 40S ribosomal protein S4-like OS=Caenorhabditis elegans GN=C48B6.2 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.483e-29
Identity = 57/167 (34.13%), Postives = 104/167 (62.28%), Query Frame = 1
Query:  106 NFLEWKREGGHREAMIMQRYHVTGRDDYKKYSSLCGMVQNLVNILKQMDPRDPFRIEMTDMLLEKLYNMGVIPSRKSLALCDHLSVSSFCRRRLATILVRLKFAEHVREAVTYIEHGHIRVGPETVTDPAFLVTGNMEDFITWVDTSKIKRKVLEYNDKVDDYDAMN 606
            +F+ W+ +   ++  ++++++V  R+ Y  Y++L    + + +++K +   DPFR + T+ +L K Y  G++P+  +L     ++ +SF RRRL  ++  +   E V+ A   +E GH+R+G + VTDPAF+VT + ED ITW   SKIK+ V++YN+  DD+D M+
Sbjct:   17 DFMSWQVDQQGKQGDMLRKFYVKKREHYALYNTLAAKSREVADLIKNLSESDPFRSKCTEDMLTKFYAAGLVPTSDTLERIGKVTGASFARRRLPVVMRNIGMCESVKTASDLVEQGHVRIGTKLVTDPAFMVTRSSEDMITWTKASKIKKHVMDYNNTRDDFDLMD 183          
The following BLAST results are available for this feature:
BLAST of FC925012 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
IMP3_MOUSE3.515e-4751.81U3 small nucleolar ribonucleoprotein protein IMP3 ... [more]
IMP3_YEAST1.023e-4649.40U3 small nucleolar ribonucleoprotein protein IMP3 ... [more]
IMP3_SCHPO2.278e-4647.93U3 small nucleolar ribonucleoprotein protein imp3 ... [more]
IMP3_BOVIN2.278e-4650.60U3 small nucleolar ribonucleoprotein protein IMP3 ... [more]
IMP3_HUMAN3.886e-4650.60U3 small nucleolar ribonucleoprotein protein IMP3 ... [more]
YS4L_PNECA1.636e-3647.71Putative 40S ribosomal protein S4-like (Fragment) ... [more]
YS4L_CAEEL1.483e-2934.13Putative 40S ribosomal protein S4-like OS=Caenorha... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP1YO09FM1 TF Citrus clementina cDNA clone KN0AAP1YO09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925012 ID=FC925012; Name=FC925012; organism=Citrus clementina; type=EST; length=731bp
CTCTCTTCATCAAATTTTCTTAAAATTTAGCAGCATCGTTTACTAAAGCA
AAGAATCATAATGAGGAAGCTAAAGTTCCATGAGAAGAAGTTGTTAAAAA
AAGTCAATTTTTTAGAATGGAAAAGAGAAGGTGGCCACAGGGAAGCCATG
ATAATGCAGCGGTACCACGTCACCGGCCGCGACGATTACAAGAAGTATTC
AAGTTTGTGCGGGATGGTGCAGAACCTGGTTAATATATTGAAGCAGATGG
ATCCAAGAGATCCTTTTCGTATTGAGATGACTGATATGCTTCTCGAGAAG
CTATATAACATGGGTGTAATACCAAGCAGGAAAAGCTTGGCTTTGTGTGA
TCATCTATCAGTTTCATCCTTCTGTAGACGCAGGCTTGCCACCATTTTGG
TGCGGTTGAAGTTTGCTGAGCACGTGAGAGAAGCTGTGACGTATATTGAA
CACGGACACATTCGAGTCGGACCGGAGACAGTTACAGACCCTGCATTCCT
CGTGACCGGGAATATGGAAGACTTTATTACATGGGTAGATACATCCAAGA
TAAAGAGAAAGGTCTTGGAATACAATGATAAGGTGGATGATTATGATGCA
ATGAACTGAAAGACCCATTAAGATCTGTTTTTTCTTTTGTTTCTGAACAT
TTTGTTTGAATTTCATGTTGTACGATGTTTAAATGGGCAATTAAAATTTA
ACTTGTTTTCAAAAAAAAAAAAAAAAAAAAA
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