FC925014

Overview
NameFC925014
Unique NameFC925014
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13487 contig Ccv1_Contig13487:4..687. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925014 vs. ExPASy Swiss-Prot
Match: COBL8_ARATH (COBRA-like protein 8 OS=Arabidopsis thaliana GN=COBL8 PE=2 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 1.824e-55
Identity = 105/195 (53.85%), Postives = 139/195 (71.28%), Query Frame = 3
Query:   96 WVSIFILFTTLPFTICQSXXXXXXXXXXXNTCNGVFLSYTYNSGSKLPPDNPKHQAYRFESTLTVLNNGLEQLKQWRAFVGFQHEEILVSASNAVLFDGNSFPASVGNGTLFAGFPMSDLKTAVMTAGDLTQMQVQVKIVGTQFGVGLRDVPMPKNISLANDGFLCSPVTRQGKSELHVCCTKDANAKSNFTGDE 680
            W+ +  LFT +  T  Q            + CNGVF+SYTY +G+K+ P++ K+Q YRFES +TVLNNG ++LK W+ FV F H EILVSA+NAVL DG+S PASV NGT+FAGFP +DLKTA+MTAGD+TQM+ +V++VGTQFGV    VP+PKNI+L NDG+ C   T+QG + L VCCT + N  ++  G +
Sbjct:   10 WILLSSLFTAIQLTSSQRNTPPPRSKDA-DLCNGVFVSYTYLTGTKIKPNDTKNQPYRFESEITVLNNGRDELKSWQVFVKFAHREILVSATNAVLSDGSSLPASVENGTIFAGFPSADLKTAIMTAGDVTQMEARVELVGTQFGVAPPSVPLPKNITLVNDGWSCPKPTQQGSNVLQVCCTPNPNITTSKIGQK 203          
BLAST of FC925014 vs. ExPASy Swiss-Prot
Match: COBL7_ARATH (COBRA-like protein 7 OS=Arabidopsis thaliana GN=COBL7 PE=1 SV=2)

HSP 1 Score: 204.912 bits (520), Expect = 3.220e-52
Identity = 100/183 (54.64%), Postives = 130/183 (71.04%), Query Frame = 3
Query:  111 ILFTTLPFTICQSXXXXXXXXXXX----NTCNGVFLSYTYNSGSKLPPDNPKHQAYRFESTLTVLNNGLEQLKQWRAFVGFQHEEILVSASNAVLFDGNSFPASVGNGTLFAGFPMSDLKTAVMTAGDLTQMQVQVKIVGTQFGVGLRDVPMPKNISLANDGFLCSPVTRQGKSELHVCCTKD 647
            +L  ++P T  QS               + CNGVF+SYT+  GSK+PP++  +Q YRFES +TVLN+G ++LK WR FV F H EILVSASNAVL DG+S P SV NGT+FAG+P SDLK+A+ TAGD+TQMQ +V++VGTQFGV   +VP+PKNI+LA DG+ C   T++G + L VCC  D
Sbjct:   16 LLIVSIPLTSSQSDANTTNPSPSPPSDSDLCNGVFVSYTHTKGSKIPPNDTANQPYRFESVITVLNHGRDELKSWRVFVKFAHREILVSASNAVLSDGSSLPVSVENGTVFAGYPSSDLKSAIQTAGDVTQMQARVELVGTQFGVAPPNVPLPKNITLATDGWKCPKATQKGTNVLQVCCIPD 198          
BLAST of FC925014 vs. ExPASy Swiss-Prot
Match: COBL9_ARATH (COBRA-like protein 9 OS=Arabidopsis thaliana GN=COBL9 PE=2 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 1.767e-50
Identity = 93/161 (57.76%), Postives = 119/161 (73.91%), Query Frame = 3
Query:  189 CNGVFLSYTYNSGSKLPPDNPKHQAYRFESTLTVLNNGLEQLKQWRAFVGFQHEEILVSASNAVLFDGNSFPASVGNGTLFAGFPMSDLKTAVMTAGDLTQMQVQVKIVGTQFGVGLRDVPMPKNISLANDGFLCSPVTRQGKSELHVCCTKDANAKSNFT 671
            CNG+FLSY +  G K+PP++   Q YRFES LTVLNNG E+LK+WR FVGFQH EIL+SA++A++ +G   PA VGNGT+F G+P+SDLKTA+ TAGDL QM  ++++VGTQF V    VP+P NISL N+G+LC   T Q K EL  CC +DA+   N T
Sbjct:   45 CNGIFLSYDFILGRKIPPNDTADQPYRFESVLTVLNNGREELKEWRVFVGFQHNEILISATDALIVNGTELPALVGNGTIFGGYPVSDLKTAIQTAGDLKQMTAEIELVGTQFMVAPPAVPLPSNISLVNEGWLCPVPTLQSKRELTTCCIRDASIIVNTT 205          
BLAST of FC925014 vs. ExPASy Swiss-Prot
Match: CBL10_ARATH (COBRA-like protein 10 OS=Arabidopsis thaliana GN=COBL10 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 6.746e-34
Identity = 70/160 (43.75%), Postives = 101/160 (63.12%), Query Frame = 3
Query:  189 CNGVFLSYTYNSGSKLPPD--NPKHQAYRFESTLTVLNNGLEQLKQWRAFVGFQHEEILVSASNAVLFDGNSFPASVGNGTLFAGFPMSDLKTAVMTAGDLTQMQVQVKIVGTQFGVGLRDVPMPKNISLANDGFLCSPVTRQGKSELHVCCTKDANAKS 662
            CNG+F+SY + S  +  P   N   Q++ F+ST  ++N G E+LK W+ F+GF+H+E++VSA+ A   DG+ +P    NGT F G P  DLKT++ TAGD TQ+   ++I GT FGV     PMP+ I L NDG+ C    R+G S +HVCC ++   K+
Sbjct:   58 CNGIFMSYNFGSREREYPHVKNVTAQSWAFKSTAMIVNAGREELKGWQMFIGFRHKELIVSATGATPMDGD-YPLDASNGTTFVGSPNMDLKTSIETAGDFTQISANIEITGTLFGVSKAVTPMPRTIKLTNDGWECPAAKRKGGS-MHVCCKRNPKIKN 215          
BLAST of FC925014 vs. ExPASy Swiss-Prot
Match: CBL11_ARATH (COBRA-like protein 11 OS=Arabidopsis thaliana GN=COBL11 PE=2 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 5.711e-33
Identity = 72/160 (45.00%), Postives = 100/160 (62.50%), Query Frame = 3
Query:  189 CNGVFLSYTYNSGSKLPP--DNPKHQAYRFESTLTVLNNGLEQLKQWRAFVGFQHEEILVSASNAVLFDGNSFPASVGNGTLFAGFPMSDLKTAVMTAGDLTQMQVQVKIVGTQFGVGLRDVPMPKNISLANDGFLCSPVTRQGKSELHVCCTKDANAKS 662
            CNGV++SY+     KL P   N   QA+ F+ST  ++N G+E++K W+ FVGF H EI+VSA+ AV  DG+ FP    NGT F G   +DLKT+++TAGD TQ+   ++I GT FG      PMPK+I L NDG+ C   T +G   + VCC ++   K+
Sbjct:   48 CNGVYMSYSSGGREKLYPRTTNATAQAWSFKSTAMIVNTGIEEVKGWQMFVGFHHREIIVSATGAVSSDGD-FPVDATNGTTFIGSQNTDLKTSILTAGDYTQISTNIEITGTVFGGKGTATPMPKSIKLTNDGWQCPAATSKG-GTMQVCCKRNPKFKA 205          
The following BLAST results are available for this feature:
BLAST of FC925014 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
COBL8_ARATH1.824e-5553.85COBRA-like protein 8 OS=Arabidopsis thaliana GN=CO... [more]
COBL7_ARATH3.220e-5254.64COBRA-like protein 7 OS=Arabidopsis thaliana GN=CO... [more]
COBL9_ARATH1.767e-5057.76COBRA-like protein 9 OS=Arabidopsis thaliana GN=CO... [more]
CBL10_ARATH6.746e-3443.75COBRA-like protein 10 OS=Arabidopsis thaliana GN=C... [more]
CBL11_ARATH5.711e-3345.00COBRA-like protein 11 OS=Arabidopsis thaliana GN=C... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP1YO10FM1 TF Citrus clementina cDNA clone KN0AAP1YO10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925014 ID=FC925014; Name=FC925014; organism=Citrus clementina; type=EST; length=684bp
CGCGTTTCCCTTTCCCACAGAGTCTCTACAAAGCCTACTTTCAAAATCCT
TACGAACAAACAAAATCAAAAAACTCAAAAGCCATGAGTTTGAACTGGGT
TTCAATTTTCATCTTATTTACAACGCTGCCGTTTACGATCTGTCAATCAC
CAGCAACCCCAGAAGCGCCAGCACCGGCAGCCAACACCTGCAACGGCGTT
TTCTTATCGTACACCTACAACTCGGGATCGAAGCTCCCGCCCGACAACCC
GAAGCACCAAGCGTATCGGTTCGAGTCAACGCTGACTGTTCTGAACAACG
GGCTGGAACAGCTGAAGCAATGGAGGGCTTTTGTGGGGTTTCAGCACGAG
GAGATTTTGGTGTCTGCGTCGAACGCGGTGTTGTTTGATGGGAATAGCTT
CCCTGCTAGTGTGGGAAACGGGACCCTTTTTGCTGGGTTTCCGATGTCTG
ACTTGAAGACGGCGGTGATGACGGCGGGTGACTTGACTCAGATGCAGGTC
CAGGTTAAGATTGTGGGGACTCAGTTTGGTGTTGGGTTACGTGATGTGCC
CATGCCGAAGAATATTAGCCTTGCTAATGATGGGTTCTTGTGCTCTCCTG
TGACCAGGCAAGGTAAGAGTGAGCTGCACGTATGCTGCACGAAAGATGCA
AATGCTAAATCAAACTTCACTGGTGATGAAAATT
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