FC925127

Overview
NameFC925127
Unique NameFC925127
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length759
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3768 contig Ccv1_Contig3768:1..759. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925127 vs. ExPASy Swiss-Prot
Match: BH093_ARATH (Transcription factor bHLH93 OS=Arabidopsis thaliana GN=BHLH93 PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.267e-26
Identity = 97/261 (37.16%), Postives = 130/261 (49.81%), Query Frame = 1
Query:   31 MEL-TQHGFLEELLAPPIARRDAWS----SFSGGLN----EYLPSGWILDSL-------DESSTLAAAASNPSSFVGFSAAPSEASFECPPFTDHLHQGYHPFVDGFTVPEVDTSSYTKNEIPSFPSAQEEYPPMVVEEDHDQLCLRSSDHLHQNHSFEETKSSCAEIEQATSNITNQGFNMGLC--VDRKRKNKKLEGQPSKNLMAEXXXXXXLNDRLSMLRSIVPKISKMDRTSILGDTIDYLKELLERINKFAEEETE 759
            MEL TQ    EELL P        +    SF+GG +    ++ P+G+ +D L       DE++ L      PSSF+   + P       PP   H      P       P + +S+           A  +YP +   ++       S   + QN   E   +  +       +  ++ F++G C     K+K+KKLEGQPSKNLMAE      LNDRLSMLRSIVPKISKMDRTSILGD IDY+KELL++INK  +EE E
Sbjct:    1 MELSTQMNVFEELLVPTKQETTDNNINNLSFNGGFDHHHHQFFPNGYNIDYLCFNNEEEDENTLLY-----PSSFMDLISQP-------PPLLLHQPPPLQPLS-----PPLSSSATA--------GATFDYPFLEALQEIIDSSSSSPPLILQNGQEENFNNPMSYPSPLMESDQSKSFSVGYCGGETNKKKSKKLEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDAIDYMKELLDKINKLQDEEQE 236          
BLAST of FC925127 vs. ExPASy Swiss-Prot
Match: BH061_ARATH (Transcription factor bHLH61 OS=Arabidopsis thaliana GN=BHLH61 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.022e-24
Identity = 83/230 (36.09%), Postives = 114/230 (49.57%), Query Frame = 1
Query:  118 LNEYLPSGWILDSL--------------DESSTLAAAASNPSSFVGFSAAPSEASFECPPFTDHLHQGYHPFVDGFTVPEVDTSSYTKNEIPSFPSAQEEYPPMVVEEDHDQLCLRSSDHLHQNHS--FEETKSSCAEIEQATSNITNQGFNMGLCVDRKRKNKKLEGQPSKNLMAEXXXXXXLNDRLSMLRSIVPKISKMDRTSILGDTIDYLKELLERINKFAEEETE 759
            +++++P+ W  D L                SS+L    S P   +     PS   ++ PP +       +PF++     ++  SSY+              PP++         L +S     N+S   EE+KS  +  E                 ++KR NKKLEGQPSKNLMAE      LNDRLS+LRSIVPKI+KMDRTSILGD IDY+KELL++INK  E+E E
Sbjct:   26 IDQFVPNDWNFDYLCFNNLLQEDDNIDHPSSSSLMNLISQPPPLLHQPPQPSSPLYDSPPLSSAFD---YPFLE-----DIIHSSYSP-------------PPLI---------LPASQENTNNYSPLMEESKSFISIGE----------------TNKKRSNKKLEGQPSKNLMAERRRRKRLNDRLSLLRSIVPKITKMDRTSILGDAIDYMKELLDKINKLQEDEQE 209          
BLAST of FC925127 vs. ExPASy Swiss-Prot
Match: SCRM2_ARATH (Transcription factor SCREAM2 OS=Arabidopsis thaliana GN=SCRM2 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.394e-17
Identity = 58/112 (51.79%), Postives = 67/112 (59.82%), Query Frame = 1
Query:  424 SSDHLHQNHSFEETKSSCA-EIEQATSNITN-QGFNMGLCVDRKRKNK-KLEGQPSKNLMAEXXXXXXLNDRLSMLRSIVPKISKMDRTSILGDTIDYLKELLERINKFAEE 750
            SS   +   S E  KSS   EI+  ++ I +  G N          NK K +G P+KNLMAE      LNDRL MLRS+VPKISKMDR SILGD IDYLKELL+RIN    E
Sbjct:  211 SSKMCNSESSSEMRKSSYEREIDDTSTGIIDISGLNYESDDHNTNNNKGKKKGMPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHTE 322          
BLAST of FC925127 vs. ExPASy Swiss-Prot
Match: ICE1_ARATH (Transcription factor ICE1 OS=Arabidopsis thaliana GN=SCRM PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.027e-16
Identity = 44/63 (69.84%), Postives = 48/63 (76.19%), Query Frame = 1
Query:  562 KLEGQPSKNLMAEXXXXXXLNDRLSMLRSIVPKISKMDRTSILGDTIDYLKELLERINKFAEE 750
            K +G P+KNLMAE      LNDRL MLRS+VPKISKMDR SILGD IDYLKELL+RIN    E
Sbjct:  300 KKKGMPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHNE 362          
BLAST of FC925127 vs. ExPASy Swiss-Prot
Match: AMS_ARATH (Transcription factor ABORTED MICROSPORES OS=Arabidopsis thaliana GN=AMS PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 8.812e-12
Identity = 37/73 (50.68%), Postives = 47/73 (64.38%), Query Frame = 1
Query:  541 DRKRKNKKLEGQPSKNLMAEXXXXXXLNDRLSMLRSIVPKISKMDRTSILGDTIDYLKELLERINKFAEEETE 759
            D K K K  +G  +KNLMAE      LNDRL  LRS+VP+I+K+DR SILGD I+Y+KEL     +  +E  E
Sbjct:  300 DPKYKKKSGKGSQAKNLMAERRRRKKLNDRLYALRSLVPRITKLDRASILGDAINYVKELQNEAKELQDELEE 372          
The following BLAST results are available for this feature:
BLAST of FC925127 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
BH093_ARATH1.267e-2637.16Transcription factor bHLH93 OS=Arabidopsis thalian... [more]
BH061_ARATH2.022e-2436.09Transcription factor bHLH61 OS=Arabidopsis thalian... [more]
SCRM2_ARATH2.394e-1751.79Transcription factor SCREAM2 OS=Arabidopsis thalia... [more]
ICE1_ARATH2.027e-1669.84Transcription factor ICE1 OS=Arabidopsis thaliana ... [more]
AMS_ARATH8.812e-1250.68Transcription factor ABORTED MICROSPORES OS=Arabid... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAP8YD16FM1 TF Citrus clementina cDNA clone KN0AAP8YD16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925127 ID=FC925127; Name=FC925127; organism=Citrus clementina; type=EST; length=759bp
CTCTTCATAGAGAAATAAGAACCGGGAGAAATGGAGCTCACTCAACATGG
TTTCTTGGAAGAATTGCTAGCTCCACCAATTGCAAGAAGAGACGCATGGT
CAAGTTTTTCAGGTGGATTGAACGAGTATTTGCCCAGTGGATGGATCCTT
GATTCTCTTGATGAGAGTTCGACTTTAGCTGCTGCTGCATCAAATCCTTC
TTCATTTGTGGGGTTTTCAGCTGCTCCATCAGAAGCTAGTTTTGAGTGTC
CTCCTTTCACTGATCACCTACATCAAGGCTACCACCCTTTTGTTGATGGA
TTCACAGTTCCAGAGGTTGACACGTCATCATACACAAAGAATGAGATACC
TTCATTTCCATCAGCTCAAGAAGAGTACCCGCCAATGGTTGTTGAGGAAG
ATCATGATCAGCTTTGTCTGCGTAGCAGTGATCATCTTCATCAAAATCAT
AGCTTTGAAGAGACAAAAAGTAGCTGTGCTGAGATTGAACAAGCCACTAG
CAACATTACTAATCAAGGTTTCAATATGGGTTTGTGTGTAGATAGAAAGA
GAAAGAATAAGAAGTTAGAAGGGCAGCCTTCAAAGAATCTAATGGCTGAA
AGGAGACGAAGAAAGCGCTTAAATGACCGCCTTTCCATGCTCAGATCAAT
AGTTCCCAAGATCAGCAAGATGGACAGAACATCTATACTTGGAGATACCA
TTGATTACTTGAAAGAGCTTCTGGAGAGAATCAATAAGTTTGCAGAAGAA
GAAACAGAA
back to top