FC925148

Overview
NameFC925148
Unique NameFC925148
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length447
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9507 contig Ccv1_Contig9507:24..469. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925148 vs. ExPASy Swiss-Prot
Match: CHIB_VITVI (Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 4.939e-33
Identity = 63/113 (55.75%), Postives = 78/113 (69.03%), Query Frame = 1
Query:  100 CGSGV-VCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPP 435
            CG+    CG       +  G++G++I+R MF D+L +RN+  CP +GFYTYDAFI AAKAFP FG +G+ T R REIAAF AQT HETTGGW  AP G YAWGYC++ E   P
Sbjct:   44 CGNTADYCGSGCQSQCSSTGDIGQLITRSMFNDMLKHRNEGSCPGKGFYTYDAFIAAAKAFPGFGTTGDTTTRKREIAAFLAQTSHETTGGWASAPDGPYAWGYCYLREQGSP 156          
BLAST of FC925148 vs. ExPASy Swiss-Prot
Match: CHI6_POPTR (Acidic endochitinase WIN6 OS=Populus trichocarpa GN=WIN6 PE=2 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 8.425e-33
Identity = 64/103 (62.14%), Postives = 74/103 (71.84%), Query Frame = 1
Query:  121 GERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEIS 429
            G  D G   D G L  II +  F+ LL +RND RCPA GFYTY+AFI AAK FP FGN+G++ MR REIAAF  QT HETTGGW DAP G YAWGYC++ EI+
Sbjct:   76 GGDDGGGDGDDGYLSDIIPKSKFDALLKFRNDARCPAAGFYTYNAFISAAKEFPDFGNTGDDLMRKREIAAFLGQTSHETTGGWPDAPCGPYAWGYCYLKEIN 178          
BLAST of FC925148 vs. ExPASy Swiss-Prot
Match: CHIT_PHAVU (Endochitinase OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 7.132e-32
Identity = 63/111 (56.76%), Postives = 76/111 (68.47%), Query Frame = 1
Query:  100 CGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISP 432
            CG G  C  +  G      +L  +ISR  F+ +L +RND  CPA+GFYTYDAFI AAKA+P+FGN+G+   R REIAAF  QT HETTGGW  AP G YAWGYCF+ E +P
Sbjct:   58 CGPG--CQSQCGGPSPAPTDLSALISRSTFDQMLKHRNDGACPAKGFYTYDAFIAAAKAYPSFGNTGDTATRKREIAAFLGQTSHETTGGWATAPDGPYAWGYCFVRERNP 166          
BLAST of FC925148 vs. ExPASy Swiss-Prot
Match: CHI2_BRANA (Endochitinase CH25 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 9.315e-32
Identity = 60/93 (64.52%), Postives = 70/93 (75.27%), Query Frame = 1
Query:  154 GELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISP 432
            G+L  IISR  F+D+L +RND  CPARGFYTYDAFI AAK+FP FG +G+   R +EIAAFF QT HETTGGW  AP G Y+WGYCF  E +P
Sbjct:   69 GDLSGIISRSQFDDMLKHRNDNACPARGFYTYDAFINAAKSFPGFGTTGDTATRKKEIAAFFGQTSHETTGGWATAPDGPYSWGYCFKQEQNP 161          
BLAST of FC925148 vs. ExPASy Swiss-Prot
Match: CHI5_PHAVU (Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 2.075e-31
Identity = 64/116 (55.17%), Postives = 77/116 (66.38%), Query Frame = 1
Query:  100 CGS-----GVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISP 432
            CGS     G  C  +  G      +L  +ISR  F+ +L +RND  CPA+GFYTYDAFI AAKA+P+FGN+G+   R REIAAF  QT HETTGGW  AP G YAWGYCF+ E +P
Sbjct:   50 CGSTTDYCGKDCQSQCGGPSPAPTDLSALISRSTFDQVLKHRNDGACPAKGFYTYDAFIAAAKAYPSFGNTGDTATRKREIAAFLGQTSHETTGGWATAPDGPYAWGYCFVRERNP 165          
BLAST of FC925148 vs. ExPASy Swiss-Prot
Match: CHI2_TOBAC (Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 2.075e-31
Identity = 65/114 (57.02%), Postives = 78/114 (68.42%), Query Frame = 1
Query:  100 CGSGVVCGERDTGHGTD--GGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPP 435
            CG G  C  +  G  T   GG+LG IIS  MF+ +L +RND  C  +GFY+Y+AFI AA++FP FG SG+ T R REIAAFFAQT HETTGGW  AP G YAWGYC++ E   P
Sbjct:   54 CGPGN-CQSQCPGGPTPPGGGDLGSIISSSMFDQMLKHRNDNACQGKGFYSYNAFINAARSFPGFGTSGDTTARKREIAAFFAQTSHETTGGWATAPDGPYAWGYCWLREQGSP 166          
BLAST of FC925148 vs. ExPASy Swiss-Prot
Match: CHI1_TOBAC (Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 3.540e-31
Identity = 59/95 (62.11%), Postives = 71/95 (74.74%), Query Frame = 1
Query:  151 GGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPP 435
            GG+LG IIS  MF+ +L +RND  C  +GFY+Y+AFI AA++FP FG SG+ T R REIAAFFAQT HETTGGW  AP G YAWGYC++ E   P
Sbjct:   77 GGDLGSIISSSMFDQMLKHRNDNACQGKGFYSYNAFINAARSFPGFGTSGDTTARKREIAAFFAQTSHETTGGWATAPDGPYAWGYCWLREQGSP 171          
BLAST of FC925148 vs. ExPASy Swiss-Prot
Match: CHIB_ARATH (Basic endochitinase B OS=Arabidopsis thaliana GN=CHI-B PE=1 SV=3)

HSP 1 Score: 131.724 bits (330), Expect = 1.345e-30
Identity = 57/93 (61.29%), Postives = 69/93 (74.19%), Query Frame = 1
Query:  154 GELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISP 432
            G+L  IIS   F+D+L +RND  CPARGFYTY+AFI AAK+FP FG +G+   R +E+AAFF QT HETTGGW  AP G Y+WGYCF  E +P
Sbjct:   84 GDLSGIISSSQFDDMLKHRNDAACPARGFYTYNAFITAAKSFPGFGTTGDTATRKKEVAAFFGQTSHETTGGWATAPDGPYSWGYCFKQEQNP 176          
BLAST of FC925148 vs. ExPASy Swiss-Prot
Match: CHIT_CARPA (Endochitinase OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 1.757e-30
Identity = 56/89 (62.92%), Postives = 70/89 (78.65%), Query Frame = 1
Query:  166 KIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISP 432
            KIISR MF+ +L +RN+  CPA+GFYTYDAF+ AAK+FP+FG +G+  +R RE+AAF  QT HETTGGW  AP G YAWGYCF+ E +P
Sbjct:    4 KIISRSMFDQMLKHRNNPACPAKGFYTYDAFLAAAKSFPSFGTTGSTDVRKRELAAFLGQTSHETTGGWPSAPDGPYAWGYCFLKERNP 92          
BLAST of FC925148 vs. ExPASy Swiss-Prot
Match: CHI2_ORYSJ (Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht2 PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 2.294e-30
Identity = 65/122 (53.28%), Postives = 80/122 (65.57%), Query Frame = 1
Query:  100 CGSGVVCGERDTGHG----------TDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPP 435
            CG G  C  + +G G          +DG  +G I+ R++FE LL +RND  CPARGFYTY+AF+ AA AFPAFG +GN   R RE+AAF  QT HETTGGW  AP G ++WGYCF  E +PP
Sbjct:   63 CGDG--CQSQCSGCGPTPTPTPPSPSDG--VGSIVPRDLFERLLLHRNDGACPARGFYTYEAFLAAAAAFPAFGGTGNTETRKREVAAFLGQTSHETTGGWPTAPDGPFSWGYCFKQEQNPP 180          
The following BLAST results are available for this feature:
BLAST of FC925148 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
CHIB_VITVI4.939e-3355.75Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE... [more]
CHI6_POPTR8.425e-3362.14Acidic endochitinase WIN6 OS=Populus trichocarpa G... [more]
CHIT_PHAVU7.132e-3256.76Endochitinase OS=Phaseolus vulgaris PE=1 SV=1[more]
CHI2_BRANA9.315e-3264.52Endochitinase CH25 OS=Brassica napus PE=2 SV=1[more]
CHI5_PHAVU2.075e-3155.17Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1[more]
CHI2_TOBAC2.075e-3157.02Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1... [more]
CHI1_TOBAC3.540e-3162.11Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1... [more]
CHIB_ARATH1.345e-3061.29Basic endochitinase B OS=Arabidopsis thaliana GN=C... [more]
CHIT_CARPA1.757e-3062.92Endochitinase OS=Carica papaya PE=1 SV=1[more]
CHI2_ORYSJ2.294e-3053.28Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YC23FM1 TF Citrus clementina cDNA clone KN0AAP3YC23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925148 ID=FC925148; Name=FC925148; organism=Citrus clementina; type=EST; length=447bp
ATTGATATCATATCTGTTGCTTTCAAAATGAGGCTTATTGCGTCCTTACT
AGTTTTCTCTCTAGTTTTATCTTTCGTACTAGGAGGCTCAGCACGGAATT
GTGGAAGCGGCGTTGTGTGCGGTGAACGTGATACCGGCCACGGGACGGAT
GGCGGTGAACTGGGCAAGATCATCTCAAGGGAGATGTTTGAAGACTTGCT
TCCGTATAGAAATGATGTACGATGCCCTGCCAGAGGCTTCTACACTTATG
ATGCTTTTATAGAGGCAGCCAAAGCTTTTCCAGCCTTTGGTAACTCTGGA
AATGAAACCATGCGTACAAGAGAAATTGCTGCCTTTTTTGCCCAAACTGG
CCATGAAACTACTGGGGGATGGCGCGATGCACCTGGTGGAGAATATGCTT
GGGGATATTGCTTTATAAGCGAAATTAGCCCTCCCGTCCCCCTACTG
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