FC925171

Overview
NameFC925171
Unique NameFC925171
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length738
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1953 contig Ccv1_Contig1953:10..747. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925171 vs. ExPASy Swiss-Prot
Match: DNAJ_SYNJA (Chaperone protein dnaJ OS=Synechococcus sp. (strain JA-3-3Ab) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.358e-27
Identity = 62/99 (62.63%), Postives = 73/99 (73.74%), Query Frame = 2
Query:  398 DYYSVLGVSRNASKSEIKSAYRKLARSYHPDVNKEPNAEQKFKEISNAYEVLSDDEKRSLYDKYGEAGLKGAG---------MGMGDFSNPFDLFESLF 667
            DYY +LGVSR++SK EIK AYR+LAR YHPDVNKEP AE +FKEI+ AYEVLSDDE R+ YD++GEAGL GA           G+G F+   DLFES F
Sbjct:    4 DYYEILGVSRDSSKEEIKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDDELRARYDRFGEAGLSGAAAAASGFQDFAGIGGFA---DLFESFF 99          
BLAST of FC925171 vs. ExPASy Swiss-Prot
Match: DNAJ_CYAA5 (Chaperone protein dnaJ OS=Cyanothece sp. (strain ATCC 51142) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 9.140e-27
Identity = 57/94 (60.64%), Postives = 72/94 (76.60%), Query Frame = 2
Query:  398 DYYSVLGVSRNASKSEIKSAYRKLARSYHPDVNKEPNAEQKFKEISNAYEVLSDDEKRSLYDKYGEAGLKGAG----MGMGDFSNPFDLFESLF 667
            DYY +LGV RNASK ++K AYR+LAR YHPDVNKEP AE++FKEI+ AYEVLS+ + RS YD++GEAG+ GAG      MGD     D+FE++F
Sbjct:    4 DYYDILGVDRNASKEDLKRAYRRLARKYHPDVNKEPGAEERFKEINRAYEVLSEPDTRSRYDQFGEAGVSGAGGFNYGDMGDMGGFADIFETIF 97          
BLAST of FC925171 vs. ExPASy Swiss-Prot
Match: DNAJ_SYNJB (Chaperone protein dnaJ OS=Synechococcus sp. GN=dnaJ PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.559e-26
Identity = 60/99 (60.61%), Postives = 74/99 (74.75%), Query Frame = 2
Query:  398 DYYSVLGVSRNASKSEIKSAYRKLARSYHPDVNKEPNAEQKFKEISNAYEVLSDDEKRSLYDKYGEAGLKGAG---------MGMGDFSNPFDLFESLF 667
            DYY +LGVSR++SK EIK AYR+LAR YHPDVNKEP AE++FKEI+ AYEVLSD+E ++ YD++GEAGL GA           GMG F+   D+FES F
Sbjct:    4 DYYEILGVSRDSSKEEIKRAYRRLARKYHPDVNKEPGAEERFKEINRAYEVLSDNELKARYDRFGEAGLSGAAAAASGFQDFAGMGGFA---DIFESFF 99          
BLAST of FC925171 vs. ExPASy Swiss-Prot
Match: DNAJ_ANAVT (Chaperone protein dnaJ OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.036e-26
Identity = 56/93 (60.22%), Postives = 71/93 (76.34%), Query Frame = 2
Query:  398 DYYSVLGVSRNASKSEIKSAYRKLARSYHPDVNKEPNAEQKFKEISNAYEVLSDDEKRSLYDKYGEAGLKGAGMG---MGDFSNPFDLFESLF 667
            DYY +LGV+R+A K EIK AYR+LAR YHPDVNKEP AE++FKEI+ AYEVLS+ E R+ YD++G  G+ GAG+G   M D     D+FES+F
Sbjct:    4 DYYEILGVARDADKEEIKQAYRRLARKYHPDVNKEPGAEERFKEINRAYEVLSEPETRARYDRFGPEGVSGAGVGFQDMSDMGGFADIFESIF 96          
BLAST of FC925171 vs. ExPASy Swiss-Prot
Match: DNAJ_ANASP (Chaperone protein dnaJ OS=Anabaena sp. (strain PCC 7120) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.036e-26
Identity = 56/93 (60.22%), Postives = 71/93 (76.34%), Query Frame = 2
Query:  398 DYYSVLGVSRNASKSEIKSAYRKLARSYHPDVNKEPNAEQKFKEISNAYEVLSDDEKRSLYDKYGEAGLKGAGMG---MGDFSNPFDLFESLF 667
            DYY +LGV+R+A K EIK AYR+LAR YHPDVNKEP AE++FKEI+ AYEVLS+ E R+ YD++G  G+ GAG+G   M D     D+FES+F
Sbjct:    4 DYYEILGVARDADKEEIKQAYRRLARKYHPDVNKEPGAEERFKEINRAYEVLSEPETRARYDRFGPEGVSGAGVGFQDMSDMGGFADIFESIF 96          
BLAST of FC925171 vs. ExPASy Swiss-Prot
Match: DNAJ_CYAP4 (Chaperone protein dnaJ OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.659e-26
Identity = 56/93 (60.22%), Postives = 71/93 (76.34%), Query Frame = 2
Query:  398 DYYSVLGVSRNASKSEIKSAYRKLARSYHPDVNKEPNAEQKFKEISNAYEVLSDDEKRSLYDKYGEAGLKGAGMG---MGDFSNPFDLFESLF 667
            DYY +LGVSR+A + ++K AYR+LAR YHPDVNKE  AE++FKEI+ AYEVLSD E R+ YD++GEAG+ GA  G   MGD     D+FES+F
Sbjct:    4 DYYDILGVSRDAGQEDLKQAYRRLARKYHPDVNKEAGAEERFKEINRAYEVLSDPETRARYDRFGEAGVSGAAAGYGDMGDMGGFADIFESIF 96          
BLAST of FC925171 vs. ExPASy Swiss-Prot
Match: DNAJ_SYNP6 (Chaperone protein dnaJ OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.924e-26
Identity = 57/95 (60.00%), Postives = 70/95 (73.68%), Query Frame = 2
Query:  395 SDYYSVLGVSRNASKSEIKSAYRKLARSYHPDVNKEPNAEQKFKEISNAYEVLSDDEKRSLYDKYGEAGLKGAG----MGMGDFSNPFDLFESLF 667
            +DYY +LGV+R+A K EIK AYR+LAR YHPDVNKEP AE KFKEI+ AYEVLS+ E R+ YD++GEAG+ GAG       GD     D+FE+ F
Sbjct:    3 ADYYQLLGVARDADKDEIKRAYRRLARKYHPDVNKEPGAEDKFKEINRAYEVLSEPETRARYDQFGEAGVSGAGAAGFQDFGDMGGFADIFETFF 97          
BLAST of FC925171 vs. ExPASy Swiss-Prot
Match: DNAJ_NOSP7 (Chaperone protein dnaJ OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.737e-26
Identity = 55/93 (59.14%), Postives = 69/93 (74.19%), Query Frame = 2
Query:  398 DYYSVLGVSRNASKSEIKSAYRKLARSYHPDVNKEPNAEQKFKEISNAYEVLSDDEKRSLYDKYGEAGLKGAGMG---MGDFSNPFDLFESLF 667
            DYY +LGVSR+  K E+K AYR+LAR YHPDVNKEP AE +FKEI+ AYEVLS+ E R+ YD++G  G+ GAG G   +GD     D+FES+F
Sbjct:    4 DYYEILGVSRDTDKEELKQAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSEPETRARYDRFGPEGVSGAGAGFQDVGDMGGFADIFESIF 96          
BLAST of FC925171 vs. ExPASy Swiss-Prot
Match: DNAJ_GEOTN (Chaperone protein dnaJ OS=Geobacillus thermodenitrificans (strain NG80-2) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.011e-25
Identity = 59/102 (57.84%), Postives = 71/102 (69.61%), Query Frame = 2
Query:  389 ADSDYYSVLGVSRNASKSEIKSAYRKLARSYHPDVNKEPNAEQKFKEISNAYEVLSDDEKRSLYDKYGEA--------GLKGAGMGMGDFSNPFDLFESLFE 670
            A  DYY VLGVS+NA+K EIK AYRKL++ YHPD+NK P+A +KFKEI  AYEVLSDDEKR+ YD++G A        G +G G   G FS  F  FE +FE
Sbjct:    2 AKRDYYEVLGVSKNATKDEIKKAYRKLSKQYHPDINKAPDAAEKFKEIKEAYEVLSDDEKRARYDRFGHADPNEAFGGGFQGGGFDFGGFSG-FGGFEDIFE 102          
BLAST of FC925171 vs. ExPASy Swiss-Prot
Match: DNAJ_THEEB (Chaperone protein dnaJ OS=Thermosynechococcus elongatus (strain BP-1) GN=dnaJ PE=3 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 1.320e-25
Identity = 55/96 (57.29%), Postives = 70/96 (72.92%), Query Frame = 2
Query:  398 DYYSVLGVSRNASKSEIKSAYRKLARSYHPDVNKEPNAEQKFKEISNAYEVLSDDEKRSLYDKYGEAGLKGAG------MGMGDFSNPFDLFESLF 667
            D+Y +LGVSR+A   E+K AYR+LAR YHPDVNKEP AE+KFKEI+ AYEVLSD + R+ YD++GEAG+ G G       G+GD     D+FE+ F
Sbjct:    4 DFYEILGVSRSADAEELKRAYRRLARKYHPDVNKEPGAEEKFKEINRAYEVLSDPQARANYDRFGEAGVSGVGAAGFSDFGIGDMGGFADIFETFF 99          
The following BLAST results are available for this feature:
BLAST of FC925171 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAJ_SYNJA5.358e-2762.63Chaperone protein dnaJ OS=Synechococcus sp. (strai... [more]
DNAJ_CYAA59.140e-2760.64Chaperone protein dnaJ OS=Cyanothece sp. (strain A... [more]
DNAJ_SYNJB1.559e-2660.61Chaperone protein dnaJ OS=Synechococcus sp. GN=dna... [more]
DNAJ_ANAVT2.036e-2660.22Chaperone protein dnaJ OS=Anabaena variabilis (str... [more]
DNAJ_ANASP2.036e-2660.22Chaperone protein dnaJ OS=Anabaena sp. (strain PCC... [more]
DNAJ_CYAP42.659e-2660.22Chaperone protein dnaJ OS=Cyanothece sp. (strain P... [more]
DNAJ_SYNP65.924e-2660.00Chaperone protein dnaJ OS=Synechococcus sp. (strai... [more]
DNAJ_NOSP77.737e-2659.14Chaperone protein dnaJ OS=Nostoc punctiforme (stra... [more]
DNAJ_GEOTN1.011e-2557.84Chaperone protein dnaJ OS=Geobacillus thermodenitr... [more]
DNAJ_THEEB1.320e-2557.29Chaperone protein dnaJ OS=Thermosynechococcus elon... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YD09FM1 TF Citrus clementina cDNA clone KN0AAP3YD09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925171 ID=FC925171; Name=FC925171; organism=Citrus clementina; type=EST; length=738bp
GCTCGTGCGCTTCTCTTCCGCTGCTCTCCCTCTCTAAAACCTTTAAGAGG
GAACGAGACGACGGAGAAGATAAGATTAAACGACAACAGTCAGGAAACTC
AGATTAGGCCAGTTGATCAGCCCCTTTTCCCTTGCTAAAACAACTTAGAT
GGCCATTATACCTTGTGGAAGTACATGGGTTGCTCAGTGGGGTATTCGTC
CTCAGTTTATGCTAAGATCCTCTACCCCAAACAGGATGTCAACATGCCAA
TCTGGCATCACAAGCAGGTTAAGCTGTCTGGCTGCTCCAAGTTCAAGCTT
TTTTTCACGCAAGTCCTTCTCTTTGTTATCTTATGCTAGTCCATCTCAGA
CTTCATACCGTCGTAGGGGAGCACGATTGATCGTTAGAGCTGATAGTGAC
TACTATTCAGTTCTAGGGGTGTCAAGAAATGCAAGTAAATCTGAAATTAA
AAGCGCTTATCGGAAGCTTGCAAGGAGTTATCACCCGGATGTAAACAAAG
AACCTAATGCAGAACAGAAGTTCAAGGAAATTAGCAATGCATATGAGGTT
CTGTCAGATGATGAGAAACGTTCTTTATATGACAAATATGGGGAGGCTGG
ACTTAAAGGTGCTGGTATGGGCATGGGGGATTTCAGCAATCCTTTCGATT
TGTTTGAATCACTATTTGAGGGCATGGGTGGTATGGGCGGAATGGGGGGC
ATGGGAAGCAGAGCTTCCAGGAGCAGAGCAGTTGATGG
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