FC925178

Overview
NameFC925178
Unique NameFC925178
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length748
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14606 contig Ccv1_Contig14606:1..748. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925178 vs. ExPASy Swiss-Prot
Match: GI1L1_ARATH (Probable gibberellin receptor GID1L1 OS=Arabidopsis thaliana GN=GID1L1 PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.957e-25
Identity = 69/191 (36.13%), Postives = 95/191 (49.74%), Query Frame = 2
Query:  149 DPETGVSSKDITISENPKISARVYLPKLA------------QPISTQKLPILFYTHGGGFCFESAFSLVETKLMNALVSEAKVVGISIEYRLAPEHPLPIAYEDSWSALQWVASHSVNNGGFDNKEPWLARFGDFDRVFVAGDSAGANIAHHVVMRAGREKLAGGVKILGAFLTQPYFWGSKPVGSEDTRD 685
            +P  GV S D+ I     + +RVY P  A            +P+    +P++ + HGG F   SA S +   L   LV   K V +S+ YR APE+P P AY+D W AL WV S S      D+K            +F+AGDS+G NIAH+V +RAG      G+ +LG  L  P F G++   SE + D
Sbjct:   58 NPVDGVFSFDVLIDRRINLLSRVYRPAYADQEQPPSILDLEKPVDGDIVPVILFFHGGSFAHSSANSAIYDTLCRRLVGLCKCVVVSVNYRRAPENPYPCAYDDGWIALNWVNSRSWLKSKKDSKV----------HIFLAGDSSGGNIAHNVALRAGE----SGIDVLGNILLNPMFGGNERTESEKSLD 234          
BLAST of FC925178 vs. ExPASy Swiss-Prot
Match: GID1_ORYSJ (Gibberellin receptor GID1 OS=Oryza sativa subsp. japonica GN=GID1 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.704e-23
Identity = 75/219 (34.25%), Postives = 104/219 (47.49%), Query Frame = 2
Query:   92 DGSVERLSGSPMVPPSP-DEDPETGVSSKDITISENPKISARVY-------------------LPKLAQPISTQKLPILFYTHGGGFCFESAFSLVETKLMNALVSEAKVVGISIEYRLAPEHPLPIAYEDSWSALQWVASHSVNNGGFDNKEPWLARFGDFD-RVFVAGDSAGANIAHHVVMRAGREKLAGGVKILGAFLTQPYFWGSKPVGSEDTRD 685
            DG+ ER  G  +    P +  P  GVSS D  I ++  +  R+Y                   L  L    + +  P++ + HGG F   SA S +   L    V  +K V +S+ YR APEH  P AY+D W+AL+WV S           +P++   GD   RVF++GDS+G NIAHHV +RA  E    GVK+ G  L    F G++   SE   D
Sbjct:   38 DGTFERDLGEYLDRRVPANARPLEGVSSFDHIIDQSVGLEVRIYRAAAEGDAEEGAAAVTRPILEFLTDAPAAEPFPVIIFFHGGSFVHSSASSTIYDSLCRRFVKLSKGVVVSVNYRRAPEHRYPCAYDDGWTALKWVMS-----------QPFMRSGGDAQARVFLSGDSSGGNIAHHVAVRAADE----GVKVCGNILLNAMFGGTERTESERRLD 241          
BLAST of FC925178 vs. ExPASy Swiss-Prot
Match: GI1L2_ARATH (Probable gibberellin receptor GID1L2 OS=Arabidopsis thaliana GN=GID1L2 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.837e-23
Identity = 70/191 (36.65%), Postives = 96/191 (50.26%), Query Frame = 2
Query:  152 PETGVSSKDITISENPKISARVYLP------------KLAQPISTQKL-PILFYTHGGGFCFESAFSLVETKLMNALVSEAKVVGISIEYRLAPEHPLPIAYEDSWSALQWVASHSVNNGGFDNKEPWLARFGDFDRVFVAGDSAGANIAHHVVMRAGREKLAGGVKILGAFLTQPYFWGSKPVGSEDTRD 685
            P  GV S D  +     +  R+Y P            +L +P+ST ++ P+L + HGG F   SA S +       LV+   VV +S++YR +PEH  P AY+D W+AL WV S      G D+             V++AGDS+G NIAH+V +RA  E    GVK+LG  L  P F G +   SE T D
Sbjct:   59 PLDGVFSFD-HVDSTTNLLTRIYQPASLLHQTRHGTLELTKPLSTTEIVPVLIFFHGGSFTHSSANSAIYDTFCRRLVTICGVVVVSVDYRRSPEHRYPCAYDDGWNALNWVKSRVWLQSGKDSNV----------YVYLAGDSSGGNIAHNVAVRATNE----GVKVLGNILLHPMFGGQERTQSEKTLD 234          
BLAST of FC925178 vs. ExPASy Swiss-Prot
Match: GI1L3_ARATH (Probable gibberellin receptor GID1L3 OS=Arabidopsis thaliana GN=GID1L3 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.095e-22
Identity = 64/189 (33.86%), Postives = 92/189 (48.68%), Query Frame = 2
Query:  149 DPETGVSSKDITISENPKISARVYLPK----------LAQPISTQKLPILFYTHGGGFCFESAFSLVETKLMNALVSEAKVVGISIEYRLAPEHPLPIAYEDSWSALQWVASHSVNNGGFDNKEPWLARFGDFDRVFVAGDSAGANIAHHVVMRAGREKLAGGVKILGAFLTQPYFWGSKPVGSEDTRD 685
            +P  GV S D+ I     + +RVY P           L  P+  + +P++ + HGG F   SA S +   L   LV     V +S+ YR APE+  P AY+D W+ L+WV S S      D+K           R+F+AGDS+G NI H+V +RA   +    + +LG  L  P F G++   SE   D
Sbjct:   58 NPVNGVFSFDVIIDRQTNLLSRVYRPADAGTSPSITDLQNPVDGEIVPVIVFFHGGSFAHSSANSAIYDTLCRRLVGLCGAVVVSVNYRRAPENRYPCAYDDGWAVLKWVNSSSWLRSKKDSKV----------RIFLAGDSSGGNIVHNVAVRAVESR----IDVLGNILLNPMFGGTERTESEKRLD 232          
BLAST of FC925178 vs. ExPASy Swiss-Prot
Match: AAAD_RABIT (Arylacetamide deacetylase OS=Oryctolagus cuniculus GN=AADAC PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.194e-13
Identity = 56/164 (34.15%), Postives = 79/164 (48.17%), Query Frame = 2
Query:   98 SVERLSGSPMVPPSPDEDPETGVSSKDITISENP--KISARVYLPKLAQPISTQKLPILFYTHGGGFCFESAFSLVETKLMNALVSEAKVVGISIEYRLAPEHPLPIAYEDSWSALQWVASHSVNNGGFDNKEPWLARFG-DFDRVFVAGDSAGANIAHHVVMR 580
            +V+ L+    VPP+ DE+         +T++E     +  RVY+PK       + L   FY HGGG+C  SA       L         VV +S  YRLAPE+  PI +ED + AL+W     V           L ++G D +RV V+GDSAG N+A  V  +
Sbjct:   60 TVKFLTSFQEVPPTSDEN---------VTVTETTFNNVPVRVYVPKRKSKTLRRGL---FYIHGGGWCVGSAALSGYDLLSRRTADRLDVVVVSTNYRLAPEYHFPIQFEDVYDALKWFLRQDV-----------LEKYGVDPERVGVSGDSAGGNLAAAVAQQ 200          
BLAST of FC925178 vs. ExPASy Swiss-Prot
Match: AAAD_HUMAN (Arylacetamide deacetylase OS=Homo sapiens GN=AADAC PE=1 SV=4)

HSP 1 Score: 72.4034 bits (176), Expect = 2.941e-12
Identity = 49/147 (33.33%), Postives = 72/147 (48.98%), Query Frame = 2
Query:  143 DEDPETGVSSKDITISENPKISARVYLPKLAQPISTQKLPILFYTHGGGFCFESAFSLVETKLMNALVSEAKVVGISIEYRLAPEHPLPIAYEDSWSALQWVASHSVNNGGFDNKEPWLARFG-DFDRVFVAGDSAGANIAHHVVMR 580
            DE P T   +  +T ++   I  RVY+PK       + L   FY HGGG+C  SA       L          V +S  YRLAP++  PI +ED ++AL+W     V           LA++G + +R+ ++GDSAG N+A  V  +
Sbjct:   69 DEVPPTSDENVTVTETKFNNILVRVYVPKRKSEALRRGL---FYIHGGGWCVGSAALSGYDLLSRWTADRLDAVVVSTNYRLAPKYHFPIQFEDVYNALRWFLRKKV-----------LAKYGVNPERIGISGDSAGGNLAAAVTQQ 201          
BLAST of FC925178 vs. ExPASy Swiss-Prot
Match: AAAD_MOUSE (Arylacetamide deacetylase OS=Mus musculus GN=Aadac PE=1 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 5.547e-11
Identity = 50/164 (30.49%), Postives = 74/164 (45.12%), Query Frame = 2
Query:   98 SVERLSGSPMVPPSPDEDPETGVSSKDITISENP--KISARVYLPKLAQPISTQKLPILFYTHGGGFCFESAFSLVETKLMNALVSEAKVVGISIEYRLAPEHPLPIAYEDSWSALQWVASHSVNNGGFDNKEPWLARFG-DFDRVFVAGDSAGANIAHHVVMR 580
            +++ L     VPP+ DE          +T+ E     +  R+Y+PK       + L   FY HGGG+C  SA       L      +   V +S +Y LAP+H  P  +ED + +L+W     V           L ++G D  RV V+GDSAG N+A  V  +
Sbjct:   60 TIQLLMSFQEVPPTSDEH---------VTVMETAFDSVPVRIYIPKRKSMALRRGL---FYIHGGGWCLGSAAHFSYDTLSRWTAHKLDAVVVSTDYGLAPKHHFPRQFEDVYRSLRWFLQEDV-----------LEKYGVDPRRVGVSGDSAGGNLAAAVTQQ 200          
The following BLAST results are available for this feature:
BLAST of FC925178 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
GI1L1_ARATH3.957e-2536.13Probable gibberellin receptor GID1L1 OS=Arabidopsi... [more]
GID1_ORYSJ3.704e-2334.25Gibberellin receptor GID1 OS=Oryza sativa subsp. j... [more]
GI1L2_ARATH4.837e-2336.65Probable gibberellin receptor GID1L2 OS=Arabidopsi... [more]
GI1L3_ARATH4.095e-2233.86Probable gibberellin receptor GID1L3 OS=Arabidopsi... [more]
AAAD_RABIT1.194e-1334.15Arylacetamide deacetylase OS=Oryctolagus cuniculus... [more]
AAAD_HUMAN2.941e-1233.33Arylacetamide deacetylase OS=Homo sapiens GN=AADAC... [more]
AAAD_MOUSE5.547e-1130.49Arylacetamide deacetylase OS=Mus musculus GN=Aadac... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP3YD12FM1 TF Citrus clementina cDNA clone KN0AAP3YD12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925178 ID=FC925178; Name=FC925178; organism=Citrus clementina; type=EST; length=748bp
TTTTTTTTTTCTCTTGAGTCACTTGAGGACAAGAGTTAATTCCATGGCCG
AAGTAGCATCAGAGCTGCTCCCACTCCTCCGAGTCTACAAAGACGGCTCC
GTTGAGCGACTCAGCGGCTCTCCGATGGTGCCGCCGTCGCCTGATGAGGA
TCCAGAAACCGGAGTCTCATCCAAAGACATCACCATTTCCGAGAACCCCA
AAATCTCGGCTAGAGTCTATCTCCCGAAACTCGCACAACCCATCAGCACC
CAAAAACTCCCAATCTTGTTTTACACACACGGTGGCGGCTTCTGCTTTGA
GTCCGCCTTCTCTTTAGTCGAAACAAAGCTGATGAATGCCCTGGTTTCTG
AAGCCAAAGTTGTTGGAATATCGATTGAGTACAGGCTAGCCCCTGAACAC
CCTCTCCCCATCGCTTACGAAGATTCCTGGTCTGCCCTCCAATGGGTTGC
TTCACACTCTGTCAACAATGGCGGCTTTGATAACAAGGAGCCATGGCTAG
CGAGGTTTGGGGATTTTGATCGAGTTTTTGTAGCTGGCGATAGTGCAGGA
GCTAACATTGCTCATCATGTGGTCATGCGAGCAGGCAGAGAGAAGTTGGC
AGGTGGTGTTAAAATTTTAGGGGCTTTTTTAACTCAACCGTACTTCTGGG
GCTCGAAGCCTGTGGGATCAGAGGATACAAGAGATTTTGAGAAGCTTTTG
CCCAGCCTTGTTTGGAAGTTTTTATGCCCTAATGTGGCTGGCGGGGCT
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