FC925188

Overview
NameFC925188
Unique NameFC925188
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length576
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5490 contig Ccv1_Contig5490:559..1134. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925188 vs. ExPASy Swiss-Prot
Match: GRXC4_ARATH (Glutaredoxin-C4 OS=Arabidopsis thaliana GN=GRXC4 PE=2 SV=2)

HSP 1 Score: 177.563 bits (449), Expect = 3.896e-44
Identity = 86/123 (69.92%), Postives = 107/123 (86.99%), Query Frame = 3
Query:   93 ISVLTLTIATLLFWASFSGASAKSSEAAFVEKTVSSHKIVIFSKSYCPYCRRAKSVFNKLNMAPHVVELDERDDGWNIQDALGEMVGRRTVPQVFINGKHIGGSDDTVEAYESGKLAQLLGIA 461
            IS++ L +A + F +  S A A S EA FV+KT+SSHKIVIFSKSYCPYC++AKSVF +L+  P+VVELDER+DGW+IQ ALGE+VGRRTVPQVFINGKH+GGSDDTV+AYESG+LA+LLG++
Sbjct:    7 ISMVMLLVALVTFISMVSSA-ASSPEADFVKKTISSHKIVIFSKSYCPYCKKAKSVFRELDQVPYVVELDEREDGWSIQTALGEIVGRRTVPQVFINGKHLGGSDDTVDAYESGELAKLLGVS 128          
BLAST of FC925188 vs. ExPASy Swiss-Prot
Match: GRXC8_ORYSJ (Glutaredoxin-C8 OS=Oryza sativa subsp. japonica GN=GRXC8 PE=2 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 8.406e-39
Identity = 75/107 (70.09%), Postives = 93/107 (86.92%), Query Frame = 3
Query:  144 SGASAKSSEAAFVEKTVSSHKIVIFSKSYCPYCRRAKSVFNKLNMA--PHVVELDERDDGWNIQDALGEMVGRRTVPQVFINGKHIGGSDDTVEAYESGKLAQLLGI 458
            S AS  +S+++FV+ TV +H +VIFSKSYCPYCRRAK+VF +L +   P+VVELD+R+DGW IQDAL +MVGRRTVPQVF++GKH+GGSDDTVEAYESGKLA+LL I
Sbjct:   24 SAASGTASKSSFVKSTVKAHDVVIFSKSYCPYCRRAKAVFKELELKKEPYVVELDQREDGWEIQDALSDMVGRRTVPQVFVHGKHLGGSDDTVEAYESGKLAKLLNI 130          
BLAST of FC925188 vs. ExPASy Swiss-Prot
Match: GRXC3_ARATH (Glutaredoxin-C3 OS=Arabidopsis thaliana GN=GRXC3 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.075e-29
Identity = 64/103 (62.14%), Postives = 79/103 (76.70%), Query Frame = 3
Query:  144 SGASAKSSEAAFVEKTVSSHKIVIFSKSYCPYCRRAKSVFNKLNMAPHVVELDERDDGWNIQDALGEMVGRRTVPQVFINGKHIGGSDDTVEAYESGKLAQLL 452
            + A A +S +AFV+  + S+KIVIFSKSYCPYC R+K +F++L   P VVELD+R+DG  IQ  L E VGRRTVPQVF+NGKHIGGSDD   A ESG+L +LL
Sbjct:   25 NSAGAANSVSAFVQNAILSNKIVIFSKSYCPYCLRSKRIFSQLKEEPFVVELDQREDGDQIQYELLEFVGRRTVPQVFVNGKHIGGSDDLGAALESGQLQKLL 127          
BLAST of FC925188 vs. ExPASy Swiss-Prot
Match: GRXS6_ORYSJ (Monothiol glutaredoxin-S6 OS=Oryza sativa subsp. japonica GN=GRXS6 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 3.914e-28
Identity = 59/120 (49.17%), Postives = 83/120 (69.17%), Query Frame = 3
Query:   96 SVLTLTIATLLFWASFSGASAKSSEAAFVEKTVSSHKIVIFSKSYCPYCRRAKSVFNKLNMAPHVVELDERDDGWNIQDALGEMVGRRTVPQVFINGKHIGGSDDTVEAYESGKLAQLLG 455
            + + + +  LL  A    A+A  S +AFV+  + S++I IFSK+YCPY  RAK +F  L   P++VELD R+DG  IQ  L ++VGR TVPQVF+NG+H+GGSDDT  A+ +G+L +LLG
Sbjct:    6 AAVPIAVFLLLVLAEADPAAATRSPSAFVQNAIYSNRITIFSKTYCPYSMRAKRIFRDLKENPYIVELDLREDGREIQSVLLDLVGRHTVPQVFVNGQHVGGSDDTANAHSNGQLQKLLG 125          
BLAST of FC925188 vs. ExPASy Swiss-Prot
Match: GRXC6_ORYSJ (Glutaredoxin-C6 OS=Oryza sativa subsp. japonica GN=GRXC6 PE=1 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 4.634e-21
Identity = 48/93 (51.61%), Postives = 61/93 (65.59%), Query Frame = 3
Query:  174 AFVEKTVSSHKIVIFSKSYCPYCRRAKSVFNKLNMAPHVVELDERDDGWNIQDALGEMVGRRTVPQVFINGKHIGGSDDTVEAYESGKLAQLL 452
            A  ++TV+S  +V++SKSYCP+C R K +F +L      +ELD   DG  +Q AL E  G+RTVP VFINGKHIGG DDT+     GKL  LL
Sbjct:    4 AKAKETVASAPVVVYSKSYCPFCVRVKKLFEQLGATFKAIELDGESDGSELQSALAEWTGQRTVPNVFINGKHIGGCDDTLALNNEGKLVPLL 96          
BLAST of FC925188 vs. ExPASy Swiss-Prot
Match: GLRX_VERFO (Glutaredoxin OS=Vernicia fordii PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.300e-20
Identity = 45/90 (50.00%), Postives = 61/90 (67.78%), Query Frame = 3
Query:  183 EKTVSSHKIVIFSKSYCPYCRRAKSVFNKLNMAPHVVELDERDDGWNIQDALGEMVGRRTVPQVFINGKHIGGSDDTVEAYESGKLAQLL 452
            ++ VSS+ +V+FSK++CPYC   K + N+L     V+ELD   DG ++Q+AL E  G+RTVP VFI GKHIGG D T   ++ GKL  LL
Sbjct:    7 QELVSSNSVVVFSKTFCPYCTSVKQLLNQLGAQFKVIELDSESDGSDLQNALAEWTGQRTVPNVFIGGKHIGGCDKTTGMHQEGKLIPLL 96          
BLAST of FC925188 vs. ExPASy Swiss-Prot
Match: GLRX_DICDI (Glutaredoxin OS=Dictyostelium discoideum GN=grxA PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.004e-20
Identity = 47/91 (51.65%), Postives = 60/91 (65.93%), Query Frame = 3
Query:  180 VEKTVSSHKIVIFSKSYCPYCRRAKSVFNKLNMAPHVVELDERDDGWNIQDALGEMVGRRTVPQVFINGKHIGGSDDTVEAYESGKLAQLL 452
            V+  + +HK++IFSK+ CPYC   K +F KL + P VVELD   DG  +Q A G++ G RTVPQVFIN K IGG D T + +  GKL  LL
Sbjct:    4 VKALIKAHKLIIFSKTTCPYCISVKDLFKKLKVVPFVVELDLESDGSELQSAAGQISGVRTVPQVFINEKFIGGCDATTKLHSQGKLIPLL 94          
BLAST of FC925188 vs. ExPASy Swiss-Prot
Match: GLRX_RICCO (Glutaredoxin OS=Ricinus communis PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.141e-19
Identity = 46/90 (51.11%), Postives = 58/90 (64.44%), Query Frame = 3
Query:  183 EKTVSSHKIVIFSKSYCPYCRRAKSVFNKLNMAPHVVELDERDDGWNIQDALGEMVGRRTVPQVFINGKHIGGSDDTVEAYESGKLAQLL 452
            ++ VSS+ +V+FSK+YCPYC   K + ++L     VVELD   DG  IQ AL E  G+RTVP VFI GKHIGG D T   +  G+L  LL
Sbjct:    7 KELVSSNAVVVFSKTYCPYCTSVKKLLDQLGAKYKVVELDTESDGSEIQTALAEWTGQRTVPNVFIGGKHIGGCDSTTAKHSQGQLVPLL 96          
BLAST of FC925188 vs. ExPASy Swiss-Prot
Match: GRXC1_ARATH (Glutaredoxin-C1 OS=Arabidopsis thaliana GN=GRXC1 PE=2 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 5.665e-19
Identity = 49/108 (45.37%), Postives = 63/108 (58.33%), Query Frame = 3
Query:  141 FSGASAKSSEAAFV----EKTVSSHKIVIFSKSYCPYCRRAKSVFNKLNMAPHVVELDERDDGWNIQDALGEMVGRRTVPQVFINGKHIGGSDDTVEAYESGKLAQLL 452
            FSG      E   V    ++ VS++ +V+FSK+YC YC+R K +  +L     V+ELDE  DG  IQ AL E  G+ TVP VFI G HIGG D  +E  + GKL  LL
Sbjct:    5 FSGNRMSKEEMEVVVNKAKEIVSAYPVVVFSKTYCGYCQRVKQLLTQLGATFKVLELDEMSDGGEIQSALSEWTGQTTVPNVFIKGNHIGGCDRVMETNKQGKLVPLL 112          
BLAST of FC925188 vs. ExPASy Swiss-Prot
Match: TRXR3_HUMAN (Thioredoxin reductase 3 OS=Homo sapiens GN=TXNRD3 PE=1 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 9.663e-19
Identity = 40/87 (45.98%), Postives = 61/87 (70.11%), Query Frame = 3
Query:  192 VSSHKIVIFSKSYCPYCRRAKSVFNKLNMAPHVVELDERDDGWNIQDALGEMVGRRTVPQVFINGKHIGGSDDTVEAYESGKLAQLL 452
            +   ++VIFSKSYCP+  R K +F+ L +  +V+ELD+ DDG  +Q+ L E+  ++TVP +F+N  H+GG D T +AY+SG L +LL
Sbjct:  174 IERSRVVIFSKSYCPHSTRVKELFSSLGVECNVLELDQVDDGARVQEVLSEITNQKTVPNIFVNKVHVGGCDQTFQAYQSGLLQKLL 260          
The following BLAST results are available for this feature:
BLAST of FC925188 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
GRXC4_ARATH3.896e-4469.92Glutaredoxin-C4 OS=Arabidopsis thaliana GN=GRXC4 P... [more]
GRXC8_ORYSJ8.406e-3970.09Glutaredoxin-C8 OS=Oryza sativa subsp. japonica GN... [more]
GRXC3_ARATH2.075e-2962.14Glutaredoxin-C3 OS=Arabidopsis thaliana GN=GRXC3 P... [more]
GRXS6_ORYSJ3.914e-2849.17Monothiol glutaredoxin-S6 OS=Oryza sativa subsp. j... [more]
GRXC6_ORYSJ4.634e-2151.61Glutaredoxin-C6 OS=Oryza sativa subsp. japonica GN... [more]
GLRX_VERFO2.300e-2050.00Glutaredoxin OS=Vernicia fordii PE=3 SV=1[more]
GLRX_DICDI3.004e-2051.65Glutaredoxin OS=Dictyostelium discoideum GN=grxA P... [more]
GLRX_RICCO1.141e-1951.11Glutaredoxin OS=Ricinus communis PE=3 SV=1[more]
GRXC1_ARATH5.665e-1945.37Glutaredoxin-C1 OS=Arabidopsis thaliana GN=GRXC1 P... [more]
TRXR3_HUMAN9.663e-1945.98Thioredoxin reductase 3 OS=Homo sapiens GN=TXNRD3 ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YD21FM1 TF Citrus clementina cDNA clone KN0AAP3YD21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925188 ID=FC925188; Name=FC925188; organism=Citrus clementina; type=EST; length=576bp
CTAAAAAACCACCTTCGCTGCCTGCACCTCTTCTGCGCGGTCTCCGGTGC
AGCATCAGACTCATCATGACGGCGAGAAGACTAACATCAATGATCTCAGT
ACTAACGTTAACGATTGCGACGCTTCTCTTCTGGGCATCATTTTCCGGAG
CTTCTGCCAAATCTTCAGAAGCTGCTTTTGTCGAAAAGACTGTCTCTTCC
CACAAGATCGTCATCTTCTCCAAGTCTTATTGCCCATATTGTAGGAGGGC
TAAATCTGTATTCAATAAGTTGAACATGGCTCCTCATGTAGTCGAGCTTG
ATGAGAGAGATGATGGCTGGAACATTCAGGATGCCTTGGGTGAGATGGTT
GGGCGGCGCACTGTACCACAGGTGTTCATAAATGGAAAGCACATTGGAGG
CTCAGATGATACTGTTGAAGCTTATGAAAGTGGGAAACTAGCTCAGCTTT
TAGGTATTGCAGCAAGACGGCAAGATGATCTCTAATTGCTTCGAGATCAA
TGCCAATTGGGGATCTGTCTAAAGCTTTGATGCACTGCTCTGAAGAACGA
GGATGATCTTTGGAAGCAATAATAGG
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