FC925191

Overview
NameFC925191
Unique NameFC925191
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length634
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1963 contig Ccv1_Contig1963:39..672. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC925191 vs. ExPASy Swiss-Prot
Match: PDC1_ORYSJ (Pyruvate decarboxylase isozyme 1 OS=Oryza sativa subsp. japonica GN=PDC1 PE=2 SV=1)

HSP 1 Score: 295.434 bits (755), Expect = 1.580e-79
Identity = 145/179 (81.01%), Postives = 161/179 (89.94%), Query Frame = 2 
Query:   98 KPPCSDLASPPNGAVSTIQSSVPATPLVNPSESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELID 634
            KP C+ + S P   VS+  ++V   P+ + + +TLGRHLARRLVQIGATDVF+VPGDFNLTLLD+LIAEPGL LIGCCNELNAGYAADGYAR+RGVGAC VTFTVGGLSVLNAIAGAYSENLP+ICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQT+TCYQAV+NNL+DAHE ID
Sbjct:   15 KPSCNSVGSLP--VVSS--NAVINPPVTSAAGATLGRHLARRLVQIGATDVFAVPGDFNLTLLDYLIAEPGLKLIGCCNELNAGYAADGYARARGVGACAVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTITCYQAVINNLDDAHEQID 189
[Close]
BLAST of FC925191 vs. ExPASy Swiss-Prot
Match: PDC1_ORYSI (Pyruvate decarboxylase isozyme 1 OS=Oryza sativa subsp. indica GN=PDC1 PE=2 SV=1)

HSP 1 Score: 295.434 bits (755), Expect = 1.580e-79
Identity = 145/179 (81.01%), Postives = 161/179 (89.94%), Query Frame = 2 
Query:   98 KPPCSDLASPPNGAVSTIQSSVPATPLVNPSESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELID 634
            KP C+ + S P   VS+  ++V   P+ + + +TLGRHLARRLVQIGATDVF+VPGDFNLTLLD+LIAEPGL LIGCCNELNAGYAADGYAR+RGVGAC VTFTVGGLSVLNAIAGAYSENLP+ICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQT+TCYQAV+NNL+DAHE ID
Sbjct:   15 KPSCNSVGSLP--VVSS--NAVIHPPVTSAAGATLGRHLARRLVQIGATDVFAVPGDFNLTLLDYLIAEPGLKLIGCCNELNAGYAADGYARARGVGACAVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTITCYQAVINNLDDAHEQID 189
[Close]
BLAST of FC925191 vs. ExPASy Swiss-Prot
Match: PDC1_MAIZE (Pyruvate decarboxylase isozyme 1 OS=Zea mays GN=PDC1 PE=2 SV=1)

HSP 1 Score: 294.278 bits (752), Expect = 3.520e-79
Identity = 141/180 (78.33%), Postives = 159/180 (88.33%), Query Frame = 2 
Query:   98 KPPCSDL-ASPPNGAVSTIQSSVPATPLVNPSESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELID 634
            KP C+ + A P   + + I +   A   + P+ +TLGRHLARRLVQIGA+DVF+VPGDFNLTLLD+LIAEPGL L+GCCNELNAGYAADGYARSRGVGAC VTFTVGGLSVLNAIAGAYSENLP++CIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQT+TCYQA++NNL+DAHE ID
Sbjct:   15 KPTCNGVGALPVANSHAIIATPAAAAATLAPAGATLGRHLARRLVQIGASDVFAVPGDFNLTLLDYLIAEPGLTLVGCCNELNAGYAADGYARSRGVGACAVTFTVGGLSVLNAIAGAYSENLPVVCIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTITCYQAIINNLDDAHEQID 194
[Close]
BLAST of FC925191 vs. ExPASy Swiss-Prot
Match: PDC2_ORYSJ (Pyruvate decarboxylase isozyme 2 OS=Oryza sativa subsp. japonica GN=PDC2 PE=2 SV=1)

HSP 1 Score: 291.967 bits (746), Expect = 1.747e-78
Identity = 149/196 (76.02%), Postives = 163/196 (83.16%), Query Frame = 2 
Query:   65 MDTKIGSLDTCKPPCSDLASPPNGAVSTIQSSV--PATPL----VNPSESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELID 634
            M+T IGS+D         A+  NGAV    S+V  P T      V+  E++LGRHLARRLVQ+G +DVF+VPGDFNLTLLDHLIAEPGL L+GCCNELNAGYAADGYAR+RGVGAC VTFTVGGLSVLNAIAGAYSENLP+ICI GGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTC+QAVV NLEDAHE ID
Sbjct:    1 METHIGSVDGAA------AAADNGAVGCPASAVGCPMTSARPAPVSAGEASLGRHLARRLVQVGVSDVFAVPGDFNLTLLDHLIAEPGLRLVGCCNELNAGYAADGYARARGVGACAVTFTVGGLSVLNAIAGAYSENLPVICIAGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCHQAVVTNLEDAHEQID 190
[Close]
BLAST of FC925191 vs. ExPASy Swiss-Prot
Match: PDC2_ORYSI (Pyruvate decarboxylase isozyme 2 OS=Oryza sativa subsp. indica GN=PDC2 PE=2 SV=2)

HSP 1 Score: 291.967 bits (746), Expect = 1.747e-78
Identity = 149/196 (76.02%), Postives = 163/196 (83.16%), Query Frame = 2 
Query:   65 MDTKIGSLDTCKPPCSDLASPPNGAVSTIQSSV--PATPL----VNPSESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELID 634
            M+T IGS+D         A+  NGAV    S+V  P T      V+  E++LGRHLARRLVQ+G +DVF+VPGDFNLTLLDHLIAEPGL L+GCCNELNAGYAADGYAR+RGVGAC VTFTVGGLSVLNAIAGAYSENLP+ICI GGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTC+QAVV NLEDAHE ID
Sbjct:    1 METHIGSVDGAA------AAADNGAVGCPASAVGCPMTSARPAPVSAGEASLGRHLARRLVQVGVSDVFAVPGDFNLTLLDHLIAEPGLRLVGCCNELNAGYAADGYARARGVGACAVTFTVGGLSVLNAIAGAYSENLPVICIAGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCHQAVVTNLEDAHEQID 190
[Close]
BLAST of FC925191 vs. ExPASy Swiss-Prot
Match: PDC1_PEA (Pyruvate decarboxylase isozyme 1 OS=Pisum sativum GN=PDC1 PE=2 SV=1)

HSP 1 Score: 288.886 bits (738), Expect = 1.479e-77
Identity = 139/170 (81.76%), Postives = 153/170 (90.00%), Query Frame = 2 
Query:  128 PNGAVSTIQSSVPATPLVNPS-ESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELID 634
            PNG+     S+  A PL   S + T+GRHLARRLV+IG  DVFSVPGDFNLTLLDHLIAEP LNL+GCCNELNAGYAADGY R++GVGACVVTFTVGGLS+LNAIAGAYSENLP+ICIVGGPNSNDYGTNRILHHTIGLPDFSQEL+CFQT+TC+QAVVNNL+DAHELID
Sbjct:    8 PNGSTPCPTSAPSAIPLRPSSCDGTMGRHLARRLVEIGVRDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYGRAKGVGACVVTFTVGGLSILNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFSQELQCFQTITCFQAVVNNLDDAHELID 177
[Close]
BLAST of FC925191 vs. ExPASy Swiss-Prot
Match: PDC2_TOBAC (Pyruvate decarboxylase isozyme 2 OS=Nicotiana tabacum GN=PDC2 PE=2 SV=1)

HSP 1 Score: 285.804 bits (730), Expect = 1.252e-76
Identity = 140/164 (85.37%), Postives = 151/164 (92.07%), Query Frame = 2 
Query:  143 STIQSSVPATPLVNPSESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELID 634
            S IQ S  ++ + N +++TLGRHLARRLV+IG  DVFSVPGDFNLTLLDHLIAEP L  IGCCNELNAGYAADGYAR+RGVGACVVTFTVGGLSVLNAIAGAYSENLP+ICIVGGPN+NDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNL+DAHE ID
Sbjct:   10 SCIQDSQSSSVIAN-TDATLGRHLARRLVEIGIQDVFSVPGDFNLTLLDHLIAEPRLKNIGCCNELNAGYAADGYARARGVGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNTNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLDDAHEQID 172
[Close]
BLAST of FC925191 vs. ExPASy Swiss-Prot
Match: PDC3_ORYSJ (Pyruvate decarboxylase isozyme 3 OS=Oryza sativa subsp. japonica GN=PDC3 PE=2 SV=1)

HSP 1 Score: 279.256 bits (713), Expect = 1.172e-74
Identity = 131/156 (83.97%), Postives = 144/156 (92.31%), Query Frame = 2 
Query:  167 ATPLVNPSESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELID 634
            A  + +  ++TLG HLARRLVQ+G +DVF+VPGDFNLTLLDHLIAEPGL ++GCCNELNAGYAADGYAR+RGVGAC VTFTVGGLSVLNAI GAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQ +TCYQAVVNNL+DAH+ ID
Sbjct:   15 AVVVPSSGDATLGGHLARRLVQVGVSDVFAVPGDFNLTLLDHLIAEPGLRVVGCCNELNAGYAADGYARARGVGACAVTFTVGGLSVLNAIGGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQPLTCYQAVVNNLDDAHDQID 170
[Close]
BLAST of FC925191 vs. ExPASy Swiss-Prot
Match: PDC3_ORYSI (Pyruvate decarboxylase isozyme 3 OS=Oryza sativa subsp. indica GN=PDC3 PE=2 SV=2)

HSP 1 Score: 279.256 bits (713), Expect = 1.172e-74
Identity = 131/156 (83.97%), Postives = 144/156 (92.31%), Query Frame = 2 
Query:  167 ATPLVNPSESTLGRHLARRLVQIGATDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELID 634
            A  + +  ++TLG HLARRLVQ+G +DVF+VPGDFNLTLLDHLIAEPGL ++GCCNELNAGYAADGYAR+RGVGAC VTFTVGGLSVLNAI GAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQ +TCYQAVVNNL+DAH+ ID
Sbjct:   15 AVVVPSSGDATLGGHLARRLVQVGVSDVFAVPGDFNLTLLDHLIAEPGLRVVGCCNELNAGYAADGYARARGVGACAVTFTVGGLSVLNAIGGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQPLTCYQAVVNNLDDAHDQID 170
[Close]
BLAST of FC925191 vs. ExPASy Swiss-Prot
Match: PDC1_TOBAC (Pyruvate decarboxylase isozyme 1 (Fragment) OS=Nicotiana tabacum GN=PDC1 PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 6.059e-47
Identity = 90/94 (95.74%), Postives = 92/94 (97.87%), Query Frame = 2 
Query:  353 AADGYARSRGVGACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELID 634
            AADGYAR+RGVGACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGL DFSQE RCFQTVTCY+AVVNNLEDAHELID
Sbjct:    1 AADGYARARGVGACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTNRILHHTIGLQDFSQEPRCFQTVTCYRAVVNNLEDAHELID 94
The following BLAST results are available for this feature:
BLAST of FC925191 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
PDC1_ORYSJ1.580e-7981.01Pyruvate decarboxylase isozyme 1 OS=Oryza sativa s... [more]
PDC1_ORYSI1.580e-7981.01Pyruvate decarboxylase isozyme 1 OS=Oryza sativa s... [more]
PDC1_MAIZE3.520e-7978.33Pyruvate decarboxylase isozyme 1 OS=Zea mays GN=PD... [more]
PDC2_ORYSJ1.747e-7876.02Pyruvate decarboxylase isozyme 2 OS=Oryza sativa s... [more]
PDC2_ORYSI1.747e-7876.02Pyruvate decarboxylase isozyme 2 OS=Oryza sativa s... [more]
PDC1_PEA1.479e-7781.76Pyruvate decarboxylase isozyme 1 OS=Pisum sativum ... [more]
PDC2_TOBAC1.252e-7685.37Pyruvate decarboxylase isozyme 2 OS=Nicotiana taba... [more]
PDC3_ORYSJ1.172e-7483.97Pyruvate decarboxylase isozyme 3 OS=Oryza sativa s... [more]
PDC3_ORYSI1.172e-7483.97Pyruvate decarboxylase isozyme 3 OS=Oryza sativa s... [more]
PDC1_TOBAC6.059e-4795.74Pyruvate decarboxylase isozyme 1 (Fragment) OS=Nic... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP3YD24FM1 TF Citrus clementina cDNA clone KN0AAP3YD24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925191 ID=FC925191; Name=FC925191; organism=Citrus clementina; type=EST; length=634bp
AAGACACTTTTCGGAAACACATTAACAAACGGACAATTCTTCGTCTCCGG
CCCTTCAATCAATCATGGACACTAAAATTGGATCACTCGACACCTGCAAG
CCCCCATGCAGCGACTTAGCCAGCCCGCCAAACGGTGCCGTTTCAACAAT
CCAATCCTCCGTTCCCGCTACTCCACTCGTCAACCCGTCCGAGTCGACCC
TCGGCCGCCACCTCGCTCGCCGGCTCGTCCAAATCGGCGCCACCGACGTC
TTCTCGGTCCCCGGCGACTTCAACTTGACGCTTCTCGACCACCTGATAGC
CGAGCCCGGGCTCAACTTGATCGGTTGCTGTAACGAGCTGAATGCCGGAT
ACGCTGCCGATGGGTACGCTCGCTCGCGTGGGGTCGGCGCCTGTGTCGTG
ACCTTCACCGTTGGTGGGCTTAGCGTGCTTAACGCTATCGCCGGTGCTTA
CAGTGAAAATCTGCCGTTGATTTGCATCGTTGGTGGCCCAAACTCCAATG
ATTACGGAACCAACAGGATCCTTCATCATACCATTGGCTTGCCTGATTTT
AGCCAAGAACTCAGATGCTTTCAGACTGTCACCTGTTATCAGGCTGTGGT
GAATAACTTGGAGGATGCCCATGAGTTGATTGAT
back to top