FC925206

Overview
NameFC925206
Unique NameFC925206
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length660
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig366 contig Ccv1_Contig366:502..1161. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925206 vs. ExPASy Swiss-Prot
Match: MTHR1_ARATH (Methylenetetrahydrofolate reductase 1 OS=Arabidopsis thaliana GN=MTHFR1 PE=1 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 1.817e-49
Identity = 90/116 (77.59%), Postives = 104/116 (89.66%), Query Frame = 3
Query:    3 EKLTALVDKSKVLPFITFMAVNKEGNWKANVNQTDVNAVTWGVFPAKEIIQPTVVDPASFKVWKDEAFEIWSRSWASLYPEGDSSRKLLEEVQSSYYLVSLVDNDYINGDLFTVFA 350
            +KL  LV+KSK  P IT+MAVNK  NW +N  ++DVNAVTWGVFPAKE+IQPT+VDPASFKVWKDEAFEIWSRSWA+LYPE D SRKLLEEV++SYYLVSLVDN+YINGD+F+VFA
Sbjct:  477 DKLDTLVEKSKAFPSITYMAVNKSENWVSNTGESDVNAVTWGVFPAKEVIQPTIVDPASFKVWKDEAFEIWSRSWANLYPEDDPSRKLLEEVKNSYYLVSLVDNNYINGDIFSVFA 592          
BLAST of FC925206 vs. ExPASy Swiss-Prot
Match: MTHR2_ARATH (Methylenetetrahydrofolate reductase 2 OS=Arabidopsis thaliana GN=MTHFR2 PE=1 SV=2)

HSP 1 Score: 192.586 bits (488), Expect = 1.538e-48
Identity = 91/118 (77.12%), Postives = 101/118 (85.59%), Query Frame = 3
Query:    3 EKLTALVDKSKVLPFITFMAVNKEGNWKANVNQTDVNAVTWGVFPAKEIIQPTVVDPASFKVWKDEAFEIWSRSWASLYPEGDSSRKLLEEVQSSYYLVSLVDNDYINGDLFTVFADL 356
            EKL A+V+K K LP IT+MAVNK   W +N  Q DVNAVTWGVFPAKEIIQPT+VDPASF VWKDEAFE WSRSWA+LYPE D SR LLEEV++SYYLVSLV+NDYINGD+F VFADL
Sbjct:  477 EKLDAVVEKCKALPSITYMAVNKGEQWVSNTAQADVNAVTWGVFPAKEIIQPTIVDPASFNVWKDEAFETWSRSWANLYPEADPSRNLLEEVKNSYYLVSLVENDYINGDIFAVFADL 594          
BLAST of FC925206 vs. ExPASy Swiss-Prot
Match: MTHR_ORYSJ (Probable methylenetetrahydrofolate reductase OS=Oryza sativa subsp. japonica GN=Os03g0815200 PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 9.654e-43
Identity = 79/118 (66.95%), Postives = 97/118 (82.20%), Query Frame = 3
Query:    3 EKLTALVDKSKVLPFITFMAVNKEGNWKANVNQTDVNAVTWGVFPAKEIIQPTVVDPASFKVWKDEAFEIWSRSWASLYPEGDSSRKLLEEVQSSYYLVSLVDNDYINGDLFTVFADL 356
            EKL  L++KSK  P +T++AVNK+G   +N+    VNAVTWGVFP KEI+QPTVVD ASF VWKDEAFEIWS+ WA L+PEGDSSR++L++VQ SY+LVSLVDNDYINGDLF  F ++
Sbjct:  477 EKLDQLIEKSKAFPSLTYIAVNKDGESFSNIPTNAVNAVTWGVFPGKEIVQPTVVDSASFMVWKDEAFEIWSKGWACLFPEGDSSREILDKVQKSYFLVSLVDNDYINGDLFAAFKEI 594          
BLAST of FC925206 vs. ExPASy Swiss-Prot
Match: MTHR1_MAIZE (Methylenetetrahydrofolate reductase 1 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.378e-41
Identity = 77/115 (66.96%), Postives = 93/115 (80.87%), Query Frame = 3
Query:    3 EKLTALVDKSKVLPFITFMAVNKEGNWKANVNQTDVNAVTWGVFPAKEIIQPTVVDPASFKVWKDEAFEIWSRSWASLYPEGDSSRKLLEEVQSSYYLVSLVDNDYINGDLFTVF 347
            EKL  L++K K  P +T++AVNK+G   +N++   VNAVTWGVFP KEIIQPTVVD ASF VWKDEAFEIW+R W  ++PEGDSSR+LLE+VQ +YYLVSLVDNDY+ GDLF  F
Sbjct:  477 EKLDQLIEKIKAFPSLTYIAVNKDGETFSNISPNAVNAVTWGVFPGKEIIQPTVVDHASFMVWKDEAFEIWTRGWGCMFPEGDSSRELLEKVQKTYYLVSLVDNDYVQGDLFAAF 591          
BLAST of FC925206 vs. ExPASy Swiss-Prot
Match: MTHR_MACFA (Methylenetetrahydrofolate reductase OS=Macaca fascicularis GN=MTHFR PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.217e-22
Identity = 45/91 (49.45%), Postives = 60/91 (65.93%), Query Frame = 3
Query:   48 ITFMAVNKEGNWKANVNQTDVNAVTWGVFPAKEIIQPTVVDPASFKVWKDEAFEIWSRSWASLYPEGDSSRKLLEEVQSSYYLVSLVDNDY 320
            + +  VN +G    N  +   NAVTWG+FP +EIIQPTVVDP SF  WKDEAF +W   W  LY E   SR +++ +  +Y+LV+LVDND+
Sbjct:  536 VNYHLVNVKGENITNAPELQPNAVTWGIFPGREIIQPTVVDPISFMFWKDEAFALWIEQWGKLYEEESPSRTIIQYIHDNYFLVNLVDNDF 626          
BLAST of FC925206 vs. ExPASy Swiss-Prot
Match: MTHR_HUMAN (Methylenetetrahydrofolate reductase OS=Homo sapiens GN=MTHFR PE=1 SV=3)

HSP 1 Score: 104.76 bits (260), Expect = 4.217e-22
Identity = 45/91 (49.45%), Postives = 60/91 (65.93%), Query Frame = 3
Query:   48 ITFMAVNKEGNWKANVNQTDVNAVTWGVFPAKEIIQPTVVDPASFKVWKDEAFEIWSRSWASLYPEGDSSRKLLEEVQSSYYLVSLVDNDY 320
            + +  VN +G    N  +   NAVTWG+FP +EIIQPTVVDP SF  WKDEAF +W   W  LY E   SR +++ +  +Y+LV+LVDND+
Sbjct:  536 VNYHLVNVKGENITNAPELQPNAVTWGIFPGREIIQPTVVDPVSFMFWKDEAFALWIERWGKLYEEESPSRTIIQYIHDNYFLVNLVDNDF 626          
BLAST of FC925206 vs. ExPASy Swiss-Prot
Match: MTHR_BOVIN (Methylenetetrahydrofolate reductase OS=Bos taurus GN=MTHFR PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.570e-21
Identity = 43/91 (47.25%), Postives = 60/91 (65.93%), Query Frame = 3
Query:   48 ITFMAVNKEGNWKANVNQTDVNAVTWGVFPAKEIIQPTVVDPASFKVWKDEAFEIWSRSWASLYPEGDSSRKLLEEVQSSYYLVSLVDNDY 320
            + +  V+ +G    N  +   NAVTWG+FP +EIIQPTVVDP SF  WKDEAF +W   W  LY E   SR +++ +  +Y+LV+LVDN++
Sbjct:  535 VNYHIVDVKGENITNAPELQPNAVTWGIFPGREIIQPTVVDPVSFMFWKDEAFALWIEQWGKLYEEESPSRMIIQYIHDNYFLVNLVDNEF 625          
BLAST of FC925206 vs. ExPASy Swiss-Prot
Match: MTHR_MOUSE (Methylenetetrahydrofolate reductase OS=Mus musculus GN=Mthfr PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.662e-21
Identity = 43/91 (47.25%), Postives = 60/91 (65.93%), Query Frame = 3
Query:   48 ITFMAVNKEGNWKANVNQTDVNAVTWGVFPAKEIIQPTVVDPASFKVWKDEAFEIWSRSWASLYPEGDSSRKLLEEVQSSYYLVSLVDNDY 320
            + +  V+ +G    N  +   NAVTWG+FP +EIIQPTVVDP SF  WKDEAF +W   W  LY E   SR +++ +  +Y+LV+LVDN++
Sbjct:  535 VNYHIVDVKGENITNAPELQPNAVTWGIFPGREIIQPTVVDPISFMFWKDEAFALWIEQWGKLYEEESPSRMIIQYIHDNYFLVNLVDNEF 625          
BLAST of FC925206 vs. ExPASy Swiss-Prot
Match: MTHR_CAEEL (Probable methylenetetrahydrofolate reductase OS=Caenorhabditis elegans GN=C06A8.1 PE=1 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 8.793e-20
Identity = 42/92 (45.65%), Postives = 60/92 (65.22%), Query Frame = 3
Query:   48 ITFMAVNKEGNW-KANVNQTDVNAVTWGVFPAKEIIQPTVVDPASFKVWKDEAFEIWSRSWASLYPEGDSSRKLLEEVQSSYYLVSLVDNDY 320
            + + A+NK+  + K N  +T   AVTWGVFP  EI QPTVVDP SF+ W+DEA+++W   W   YP+   S  +++ V   + LV+LVDND+
Sbjct:  553 VNYHAINKDSTFDKTNSEETTPIAVTWGVFPGSEIAQPTVVDPLSFRAWRDEAYQMWMAQWGDFYPKESKSYGVIKAVHDEFRLVTLVDNDF 644          
BLAST of FC925206 vs. ExPASy Swiss-Prot
Match: MTHR1_SCHPO (Methylenetetrahydrofolate reductase 1 OS=Schizosaccharomyces pombe GN=met9 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.341e-19
Identity = 50/114 (43.86%), Postives = 66/114 (57.89%), Query Frame = 3
Query:    9 LTALVDKSKVLPFITFMAVNKEGNWKANVNQTDVNAVTWGVFPAKEIIQPTVVDPASFKVWKDEAFEIWSRSWASLYPEGDSSRKLLEEVQSSYYLVSLVDNDYING-DLFTVF 347
            L  L +  K L  +++   NK G+   N      NAVTWGVFP +EIIQPT+V+  SF  WKDEA+ +    WA+ Y     SRKLL  +   ++L  +VDND+ NG  LF VF
Sbjct:  472 LNELKETVKKLNSVSYFVTNKNGDLDTNSQYEIPNAVTWGVFPNREIIQPTIVESTSFLAWKDEAYSL-GMEWANAYSPDSISRKLLVSMMKEWFLCVIVDNDFQNGQSLFDVF 584          
The following BLAST results are available for this feature:
BLAST of FC925206 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
MTHR1_ARATH1.817e-4977.59Methylenetetrahydrofolate reductase 1 OS=Arabidops... [more]
MTHR2_ARATH1.538e-4877.12Methylenetetrahydrofolate reductase 2 OS=Arabidops... [more]
MTHR_ORYSJ9.654e-4366.95Probable methylenetetrahydrofolate reductase OS=Or... [more]
MTHR1_MAIZE2.378e-4166.96Methylenetetrahydrofolate reductase 1 OS=Zea mays ... [more]
MTHR_MACFA4.217e-2249.45Methylenetetrahydrofolate reductase OS=Macaca fasc... [more]
MTHR_HUMAN4.217e-2249.45Methylenetetrahydrofolate reductase OS=Homo sapien... [more]
MTHR_BOVIN3.570e-2147.25Methylenetetrahydrofolate reductase OS=Bos taurus ... [more]
MTHR_MOUSE4.662e-2147.25Methylenetetrahydrofolate reductase OS=Mus musculu... [more]
MTHR_CAEEL8.793e-2045.65Probable methylenetetrahydrofolate reductase OS=Ca... [more]
MTHR1_SCHPO3.341e-1943.86Methylenetetrahydrofolate reductase 1 OS=Schizosac... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YF11FM1 TF Citrus clementina cDNA clone KN0AAP8YF11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925206 ID=FC925206; Name=FC925206; organism=Citrus clementina; type=EST; length=660bp
TAGAGAAGTTGACTGCACTTGTTGACAAAAGCAAAGTTCTTCCATTCATA
ACCTTCATGGCTGTCAACAAAGAAGGGAACTGGAAAGCCAATGTTAATCA
AACTGATGTGAATGCCGTAACTTGGGGGGTCTTCCCAGCCAAGGAGATTA
TCCAACCGACTGTTGTTGACCCTGCCAGCTTCAAGGTGTGGAAGGATGAG
GCATTCGAAATTTGGTCAAGATCATGGGCTTCATTGTACCCCGAGGGAGA
CTCATCAAGAAAATTGCTCGAAGAGGTGCAGAGCAGCTATTATTTGGTCA
GCTTGGTGGATAATGATTACATCAATGGGGATCTTTTTACTGTTTTTGCC
GATCTCTAGGTTAAGCTGCTGTACTCCATGGAATTACAACCTGATTTCAT
CAATGGTCATCTTGTACCCTCACTGAAGCCATTTGAAGTGTTGCCTTCTC
TCAAGTTAATTTCAATTGAAATTTATCCAAAATTACAAGCTTACTGATTG
TATTAATAAGATGATAGGGATTTTGATACCTCCCTGATGCTCCATGCAAA
TTAAATTGGCAGCTTTCATTCTATTGAATCGCTCCTAATTATTTGTCAAT
GGAAGTTGCAATCTGAAAATTGTAGCGTTACCTAAATATATTTAATTCCA
ATAAAGTGAG
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