FC925213

Overview
NameFC925213
Unique NameFC925213
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length811
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1965 contig Ccv1_Contig1965:1..811. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC925213 vs. ExPASy Swiss-Prot
Match: OCS1_MAIZE (Ocs element-binding factor 1 OS=Zea mays GN=OBF1 PE=2 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 2.472e-15
Identity = 43/97 (44.33%), Postives = 63/97 (64.95%), Query Frame = 3 
Query:  516 SSGSDSDPRYANVDERKRKRMISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRVQAMELTDRLRSLNSVLQI 806
            +SGSD D   A    R+ KR +SNRESARRSR++KQ+ +++LV E+  L++ NA +         +Y  +E  N +LR +A EL DRLRS+N VL++
Sbjct:   13 TSGSDGDS--AADTHRREKRRLSNRESARRSRLRKQQHLDELVQEVARLQADNARVAARARDIASQYTRVEQENTVLRARAAELGDRLRSVNEVLRL 107
The following BLAST results are available for this feature:
BLAST of FC925213 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
OCS1_MAIZE2.472e-1544.33Ocs element-binding factor 1 OS=Zea mays GN=OBF1 P... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP3YE03FM1 TF Citrus clementina cDNA clone KN0AAP3YE03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925213 ID=FC925213; Name=FC925213; organism=Citrus clementina; type=EST; length=811bp
CGCTCAAGGATTATCTCGCTTTGACAATAGATCGTCTTTTGCGTTTCGTC
TTTGTTTCGTTCTTGCTAAGCAACAGCTAAGTTATCTTTTTCTCTCTTTC
TTTTCCTTTTATCCTCGCTCCTAAATAGTCCTTGAATCTTTAGATCTGAT
CCAAATCCAGGTTTTTTTCTTTGGTTTTTTACTTTCAATCGCTGCCTTCT
GTTGGATCTGGACTTATGCGAAGTTAGGGTTCTGAAAACAACACCAATGA
TTCTAGATTTTCTATGAGTTATTCCGTCCTTATGAAGAGAATTAGAATTC
TTCACTCTTTCTCGGTTGTATTTCTCTACTGGTTCTACGTGTTTTCATGA
ATTAGAAATCTCAATTCTCTCGTTTGATCACGCTTTCTAGTATCCAATTA
TTTTAATCCATTTTCTTGTTTGCAACCCTCGATTTCTTAATTGTAAGTAG
TTAAATTTATTAAACTAGAAAAAAAAAAACAAAACAAATTTATGGCTTCA
ATTCAAAGACAAGGAAGTTCCGGCTCCGATAGCGACCCGCGATATGCGAA
CGTTGACGAGCGGAAAAGGAAGAGGATGATATCGAACCGTGAATCGGCCA
GGAGGTCAAGGATGAAGAAACAGAAGCAGATGGAGGATTTGGTCAATGAA
ATCAACCATTTGGAAAGCGCCAATGCCATGCTTAAGCAAAACATTGATTC
ATCTGTCCAACGCTATGTTGAAATGGAGTCCGCCAACAACATTCTGAGGG
TTCAAGCTATGGAGCTGACTGATCGTTTGCGCTCCTTGAACTCTGTCCTC
CAGATATGGGC
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