FC925216

Overview
NameFC925216
Unique NameFC925216
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length447
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1966 contig Ccv1_Contig1966:1..447. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925216 vs. ExPASy Swiss-Prot
Match: AROF_TOBAC (Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic OS=Nicotiana tabacum GN=DHAPS-1 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 3.956e-27
Identity = 72/152 (47.37%), Postives = 89/152 (58.55%), Query Frame = 3
Query:   48 MALVGST---SITPTKSSFVQPQS---QPF--------ITKPRSNIHPISAVHAADSAKPPSAVKTTTKAPEPVLKT-----SNVGPQKWTVDSWKSKKALQLPEYPNKEELESVLKTLDDFPPIVFAGXXXXXXXXXXXXXMGKAFLLQGG 446
            MAL  S+   S+ P KS  VQ QS    P          TKP   + PISA+H++DS+K P      +  P P   T     + V   +WTV+SWKSKKALQLPEYPN+EEL+SVLKT+++FPPIVFAG             MG+AFLLQGG
Sbjct:    1 MALSSSSTTNSLLPNKSQLVQNQSLLPSPLKNVSFTTNSTKPVRFVQPISAIHSSDSSKNPIVSDKPSSKPSPPAATVTAAATTVTKTEWTVESWKSKKALQLPEYPNQEELQSVLKTIEEFPPIVFAGEARSLEERLGEAAMGRAFLLQGG 152          
BLAST of FC925216 vs. ExPASy Swiss-Prot
Match: AROF_SOLTU (Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic OS=Solanum tuberosum GN=SHKA PE=1 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 1.662e-25
Identity = 69/136 (50.74%), Postives = 81/136 (59.56%), Query Frame = 3
Query:   75 TPTKSSFVQPQSQPFITKPRSNIHPISAVHAADSAK------------PPSAVKTTTKAPEPVLKTSNVGPQKWTVDSWKSKKALQLPEYPNKEELESVLKTLDDFPPIVFAGXXXXXXXXXXXXXMGKAFLLQGG 446
            +P K++F    S    TK    + PISAVH++DS K            PP+A  TT  AP  V KT      +W VDSWKSKKALQLPEYPN+EEL SVLKT+D+FPPIVFAG             MG+AFLLQGG
Sbjct:   27 SPLKNAFFSNNS----TKTVRFVQPISAVHSSDSNKIPIVSDKPSKSSPPAATATTAPAPA-VTKT------EWAVDSWKSKKALQLPEYPNQEELRSVLKTIDEFPPIVFAGEARSLEERLGEAAMGRAFLLQGG 151          
BLAST of FC925216 vs. ExPASy Swiss-Prot
Match: AROG_SOLLC (Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 2.171e-25
Identity = 71/158 (44.94%), Postives = 88/158 (55.70%), Query Frame = 3
Query:   48 MALVGSTSITPTKSSFVQPQSQPFITKPRSN-------------IHPISAVHAADSAK------------PPSAVKTTTKAPEPVLKTSNVGPQKWTVDSWKSKKALQLPEYPNKEELESVLKTLDDFPPIVFAGXXXXXXXXXXXXXMGKAFLLQGG 446
            MAL  +T+     S+    Q+QP ++ P  N             + PI+AVH++DS K            PP+A  TT  AP  V KT      +W VDSWKSKKALQLPEYP++EEL SVLKT+D+FPPIVFAG             MG+AFLLQGG
Sbjct:    1 MALSTNTTTNSLLSNKSLLQNQPLLSSPSKNAFFSNKSTKTVRFVQPIAAVHSSDSNKNPIVSDKPTKSSPPAATATTAPAPA-VTKT------EWAVDSWKSKKALQLPEYPDQEELRSVLKTIDEFPPIVFAGEARSLEERLGEAAMGRAFLLQGG 151          
BLAST of FC925216 vs. ExPASy Swiss-Prot
Match: AROG_ORYSJ (Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic OS=Oryza sativa subsp. japonica GN=DAHPS2 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.556e-23
Identity = 56/103 (54.37%), Postives = 68/103 (66.02%), Query Frame = 3
Query:  150 ISAVHAADSAKPPSAVKTTTKAPEPVL----KTSNVGPQKWTVDSWKSKKALQLPEYPNKEELESVLKTLDDFPPIVFAGXXXXXXXXXXXXXMGKAFLLQGG 446
            +SAVHAAD AK    V+   KA  P      +   VG  KWTVDSWK+KKALQLPEYP++EEL+SVLKT++ FPP+VFAG             MG+AF+LQGG
Sbjct:   38 VSAVHAADPAKSNGPVQAAAKASSPSTVAAPEKKPVGLGKWTVDSWKAKKALQLPEYPSQEELDSVLKTIETFPPVVFAGEARHLEERLADAAMGRAFVLQGG 140          
BLAST of FC925216 vs. ExPASy Swiss-Prot
Match: AROF_ORYSJ (Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic OS=Oryza sativa subsp. japonica GN=DAHPS1 PE=2 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 6.535e-22
Identity = 63/153 (41.18%), Postives = 83/153 (54.25%), Query Frame = 3
Query:   51 ALVGSTSITPTKSSFVQPQSQPFITKPRSNIHPISAVHAADSAKPP-----SAVKTTTK------------APEPVLK----TSNVGPQKWTVDSWKSKKALQLPEYPNKEELESVLKTLDDFPPIVFAGXXXXXXXXXXXXXMGKAFLLQGG 446
            ++ G  ++ P  ++     +  F+T  R     + AVHAA+ +K P     SA KT++             AP PV      T  V P +W VDSW++KKALQLPEYPN  ELE+VLKT++ FPPIVFAG             MG+AFLLQGG
Sbjct:    8 SMAGGAAVVPRSATATTASA--FVTMKR-RATAVRAVHAAEPSKNPPVGVPSAAKTSSPSVAAPEKAPVAAAPAPVAPAPAATKQVAPARWAVDSWRTKKALQLPEYPNAAELEAVLKTIEAFPPIVFAGEARHLEERLADAAMGRAFLLQGG 157          
BLAST of FC925216 vs. ExPASy Swiss-Prot
Match: AROF_ARATH (Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic OS=Arabidopsis thaliana GN=DHS1 PE=2 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 1.902e-21
Identity = 55/108 (50.93%), Postives = 72/108 (66.67%), Query Frame = 3
Query:  123 TKPRSNIHPISAVHAADSAKPPSAVKTTTKAPEPVLKTSNVGPQKWTVDSWKSKKALQLPEYPNKEELESVLKTLDDFPPIVFAGXXXXXXXXXXXXXMGKAFLLQGG 446
            TKP+S ++ ++AVHAA+ A+   +VK +       + +S+ G  KWT +SWK KKALQLP+YPN  ELESVLKT++ FPPIVFAG             +GKAFLLQGG
Sbjct:   38 TKPKS-VNLVTAVHAAEPARNAVSVKES-------VASSSSGALKWTPESWKLKKALQLPDYPNANELESVLKTIEAFPPIVFAGEARNLEERLADAAVGKAFLLQGG 137          
BLAST of FC925216 vs. ExPASy Swiss-Prot
Match: AROG_SOLTU (Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic OS=Solanum tuberosum GN=SHKB PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 4.236e-21
Identity = 63/142 (44.37%), Postives = 80/142 (56.34%), Query Frame = 3
Query:   48 MALVGSTSITPTKS---------SFVQPQSQPFITKPRSNIHPISAVHAADSAKPPSAVKTTTKAPEPVLKTSNVGPQKWTVDSWKSKKALQLPEYPNKEELESVLKTLDDFPPIVFAGXXXXXXXXXXXXXMGKAFLLQGG 446
            MAL  + S++ +KS            QP+   F T      HPISAVHAA+ +K  +AVK                  KW++DSWK+KKALQLPEYP+++ELESVLKTL+  PP+VFAG             +GKAFLLQGG
Sbjct:    1 MALSNTLSLSSSKSLVQSHLLHNPLPQPRFSLFPTTQHGRRHPISAVHAAEPSK--TAVKQG----------------KWSLDSWKTKKALQLPEYPDEKELESVLKTLEMNPPLVFAGEARSLEEKLGEAALGKAFLLQGG 124          
BLAST of FC925216 vs. ExPASy Swiss-Prot
Match: AROF_SOLLC (Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 7.226e-21
Identity = 63/142 (44.37%), Postives = 80/142 (56.34%), Query Frame = 3
Query:   48 MALVGSTSITPTKSSFV---------QPQSQPFITKPRSNIHPISAVHAADSAKPPSAVKTTTKAPEPVLKTSNVGPQKWTVDSWKSKKALQLPEYPNKEELESVLKTLDDFPPIVFAGXXXXXXXXXXXXXMGKAFLLQGG 446
            MAL  + S++ +KS            QP+   F T      HPISAVHAA+ +K  +AVK                  KW++DSWK+KKALQLPEYP+++ELESVLKTL+  PP+VFAG             +GKAFLLQGG
Sbjct:    1 MALSNTLSLSSSKSLVQSHLLHNPTPQPRFSLFPTTQHGRRHPISAVHAAEPSK--TAVKQG----------------KWSLDSWKTKKALQLPEYPDEKELESVLKTLEMNPPLVFAGEARSLEEKLGEAALGKAFLLQGG 124          
BLAST of FC925216 vs. ExPASy Swiss-Prot
Match: AROG_ARATH (Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic OS=Arabidopsis thaliana GN=DHS2 PE=2 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 6.330e-17
Identity = 51/135 (37.78%), Postives = 72/135 (53.33%), Query Frame = 3
Query:   48 MALVGSTSITPTKSSFVQPQSQPFITKPRSNIH--PISAVHAADSAKPPSAVKTTTKAPEPVLKTSNVGPQKWTVDSWKSKKALQLPEYPNKEELESVLKTLDDFPPIVFAGXXXXXXXXXXXXXMGKAFLLQGG 446
            M  + ++S   TKS        P+   PR  I   P+ AVH+ D  K   +   + K               W+++SWKSKKALQLP+YP++++++SVL+TL  FPPIVFAG             MG+AF+LQGG
Sbjct:    1 MVTLNASSPLTTKSFL------PYRHAPRRPISFSPVFAVHSTDPKKSTQSASASVK---------------WSLESWKSKKALQLPDYPDQKDVDSVLQTLSSFPPIVFAGEARKLEDKLGQAAMGQAFMLQGG 114          
BLAST of FC925216 vs. ExPASy Swiss-Prot
Match: AROF_CATRO (Probable phospho-2-dehydro-3-deoxyheptonate aldolase, chloroplastic OS=Catharanthus roseus GN=DHS1 PE=2 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 4.103e-16
Identity = 49/107 (45.79%), Postives = 61/107 (57.01%), Query Frame = 3
Query:  126 KPRSNIHPISAVHAADSAKPPSAVKTTTKAPEPVLKTSNVGPQKWTVDSWKSKKALQLPEYPNKEELESVLKTLDDFPPIVFAGXXXXXXXXXXXXXMGKAFLLQGG 446
            KPRS+    +AVH     K P +  T TK    +L         W  +SWKSKKALQLPEYP++ +L+ VLKT++ FPP+VFAG             MG AFLLQGG
Sbjct:   36 KPRSSRPISAAVHVTQPPKTPISSATATKRRLSLLNGV------W--ESWKSKKALQLPEYPDEGKLDGVLKTIEAFPPLVFAGEARSLEEKLAQAAMGNAFLLQGG 134          
The following BLAST results are available for this feature:
BLAST of FC925216 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
AROF_TOBAC3.956e-2747.37Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chl... [more]
AROF_SOLTU1.662e-2550.74Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chl... [more]
AROG_SOLLC2.171e-2544.94Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chl... [more]
AROG_ORYSJ1.556e-2354.37Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chl... [more]
AROF_ORYSJ6.535e-2241.18Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chl... [more]
AROF_ARATH1.902e-2150.93Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chl... [more]
AROG_SOLTU4.236e-2144.37Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chl... [more]
AROF_SOLLC7.226e-2144.37Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chl... [more]
AROG_ARATH6.330e-1737.78Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chl... [more]
AROF_CATRO4.103e-1645.79Probable phospho-2-dehydro-3-deoxyheptonate aldola... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP3YE05FM1 TF Citrus clementina cDNA clone KN0AAP3YE05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925216 ID=FC925216; Name=FC925216; organism=Citrus clementina; type=EST; length=447bp
AAGAAATTCGTCTTTTTAACATTTCAACAAAAATAAATTAGAACATTATG
GCTCTCGTTGGCAGTACTTCAATTACTCCCACAAAATCTTCCTTCGTTCA
GCCACAATCTCAGCCGTTCATCACCAAACCCAGATCAAATATCCATCCCA
TCTCCGCCGTCCATGCTGCTGACTCTGCCAAGCCACCGTCTGCCGTAAAA
ACCACAACAAAGGCACCCGAGCCAGTCCTCAAGACCAGCAATGTGGGTCC
CCAAAAATGGACGGTTGACAGCTGGAAATCCAAGAAGGCTTTGCAGCTGC
CGGAGTATCCAAACAAAGAGGAGCTCGAGTCCGTGCTGAAAACGCTCGAC
GATTTCCCGCCGATTGTGTTCGCCGGTGAAGCCAGGAGCTTGGAGGAGCG
GCTAGCTGAAGCCGCCATGGGCAAAGCTTTCTTGCTTCAAGGCGGTG
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