FC925254

Overview
NameFC925254
Unique NameFC925254
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length228
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC925254 vs. ExPASy Swiss-Prot
Match: CHIB_VITVI (Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.001e-11
Identity = 28/43 (65.12%), Postives = 30/43 (69.77%), Query Frame = 3 
Query:   84 GSAGNCGS---GVVCPGGECCSRFGWCGLTTDYCCEGCQSNCN 203
            GSA  CG    G VCPGG CCS+FGWCG T DYC  GCQS C+
Sbjct:   18 GSAEQCGGQAGGRVCPGGACCSKFGWCGNTADYCGSGCQSQCS 60
[Close]
BLAST of FC925254 vs. ExPASy Swiss-Prot
Match: CHIT_PHAVU (Endochitinase OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.932e-11
Identity = 24/36 (66.67%), Postives = 26/36 (72.22%), Query Frame = 3 
Query:   93 GNCGSGVVCPGGECCSRFGWCGLTTDYCCEGCQSNC 200
            G    G +CPGG CCS+FGWCG TTDYC  GCQS C
Sbjct:   31 GRQAGGALCPGGNCCSQFGWCGSTTDYCGPGCQSQC 66
The following BLAST results are available for this feature:
BLAST of FC925254 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
CHIB_VITVI2.001e-1165.12Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE... [more]
CHIT_PHAVU9.932e-1166.67Endochitinase OS=Phaseolus vulgaris PE=1 SV=1[more]
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Properties
Property NameValue
Genbank descriptionKN0AAP8YG08FM1 TF Citrus clementina cDNA clone KN0AAP8YG08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925254 ID=FC925254; Name=FC925254; organism=Citrus clementina; type=EST; length=228bp
TTGATATCATAACTGTTGCTTTCAAAATGAGGCTTATTGGGTCCTTACTA
ATTTTCTCTCTGGTTTTATCTTTTGTACTAGGAGGCTCAGCAGGGAACTG
TGGAAGCGGCGTTGTGTGCCCAGGAGGGGAGTGTTGTAGTCGATTTGGTT
GGTGTGGCCTAACAACAGACTACTGTTGTGAAGGCTGCCAAAGTAACTGT
AATCAGGTTGTTTGCGGTGAATGTGATC
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