FC925271

Overview
NameFC925271
Unique NameFC925271
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length583
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14617 contig Ccv1_Contig14617:1..584. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC925271 vs. ExPASy Swiss-Prot
Match: PHG1A_DICDI (Putative phagocytic receptor 1a OS=Dictyostelium discoideum GN=phg1a PE=2 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 9.254e-65
Identity = 112/189 (59.26%), Postives = 147/189 (77.78%), Query Frame = 2 
Query:   17 AQEETGWKLVHGDVFRPPTNSDLLCVYVGTGVQFFGMMLVTMIFALLGFLSPSN*GGLMTAMLLLWVFMGLFAGYASARLYKLFKGTEWKRIAFRTAITFPGIVSAIFFVLNALIWGQKSSGAVPFGTMFALIVLWFGISVPLVYVGSFVGFKKPAIEDPVKTNKIPRQIPEQAWYMNPIFSIPIGGIL 583
            +QEETGWK++HGDVFRPP++  LL V +G+GVQ F M L+TMIFA+LGFLSP+N GGL TA+++L+V   +FAGY S R++ +FKG  WK+    TA++ PGI+  IFF +N  + G KSS AVPFGT  ++I +WFGISVPLV++GS+   KKP  EDPV+TN+IPRQ+P+Q WYMNP  SI +GGIL
Sbjct:  321 SQEETGWKMIHGDVFRPPSHPMLLSVCIGSGVQIFSMTLITMIFAVLGFLSPANIGGLATALIVLFVLSAMFAGYFSTRVFTIFKGRNWKKNTIYTALSMPGIIFGIFFFVNMFLRGAKSSAAVPFGTFASIIAMWFGISVPLVFLGSYFASKKPVPEDPVRTNQIPRQVPDQIWYMNPYLSILMGGIL 509
[Close]
BLAST of FC925271 vs. ExPASy Swiss-Prot
Match: TM9S2_RAT (Transmembrane 9 superfamily member 2 OS=Rattus norvegicus GN=Tm9sf2 PE=2 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.171e-59
Identity = 109/193 (56.48%), Postives = 141/193 (73.06%), Query Frame = 2 
Query:    5 TQDVAQEETGWKLVHGDVFRPPTNSDLLCVYVGTGVQFFGMMLVTMIFALLGFLSPSN*GGLMTAMLLLWVFMGLFAGYASARLYKLFKGTEWKRIAFRTAITFPGIVSAIFFVLNALIWGQKSSGAVPFGTMFALIVLWFGISVPLVYVGSFVGFKKPAIEDPVKTNKIPRQIPEQAWYMNPIFSIPIGGIL 583
            T+D AQEE GWKLVHGD+FRPP    LL V++G+G Q   M  VT+ FA LGFLSP+N G LMT  ++LWV +G  AGY +AR YK F G +WK     T+   PGIV A FF++N ++WG+ SS A+PFGT+ A++ LWF ISVPL ++G++ GFKK AIE PV+TN+IPRQIPEQ++Y  P+  I +GGIL
Sbjct:  339 TED-AQEEFGWKLVHGDIFRPPRKGMLLSVFLGSGTQILIMTFVTLFFACLGFLSPANRGALMTCAVVLWVLLGTPAGYVAARFYKSFGGEKWKTNVLLTSFLCPGIVFADFFIMNLILWGEGSSAAIPFGTLVAILALWFCISVPLTFIGAYFGFKKNAIEHPVRTNQIPRQIPEQSFYTKPLPGIIMGGIL 530
[Close]
BLAST of FC925271 vs. ExPASy Swiss-Prot
Match: TM9S2_PONAB (Transmembrane 9 superfamily member 2 OS=Pongo abelii GN=TM9SF2 PE=2 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.171e-59
Identity = 109/193 (56.48%), Postives = 141/193 (73.06%), Query Frame = 2 
Query:    5 TQDVAQEETGWKLVHGDVFRPPTNSDLLCVYVGTGVQFFGMMLVTMIFALLGFLSPSN*GGLMTAMLLLWVFMGLFAGYASARLYKLFKGTEWKRIAFRTAITFPGIVSAIFFVLNALIWGQKSSGAVPFGTMFALIVLWFGISVPLVYVGSFVGFKKPAIEDPVKTNKIPRQIPEQAWYMNPIFSIPIGGIL 583
            T+D AQEE GWKLVHGD+FRPP    LL V++G+G Q   M  VT+ FA LGFLSP+N G LMT  ++LWV +G  AGY +AR YK F G +WK     T+   PGIV A FF++N ++WG+ SS A+PFGT+ A++ LWF ISVPL ++G++ GFKK AIE PV+TN+IPRQIPEQ++Y  P+  I +GGIL
Sbjct:  339 TED-AQEEFGWKLVHGDIFRPPRKGMLLSVFLGSGTQILIMTFVTLFFACLGFLSPANRGALMTCAVVLWVLLGTPAGYVAARFYKSFGGEKWKTNVLLTSFLCPGIVFADFFIMNLILWGEGSSAAIPFGTLVAILALWFCISVPLTFIGAYFGFKKNAIEHPVRTNQIPRQIPEQSFYTKPLPGIIMGGIL 530
[Close]
BLAST of FC925271 vs. ExPASy Swiss-Prot
Match: TM9S2_MOUSE (Transmembrane 9 superfamily member 2 OS=Mus musculus GN=Tm9sf2 PE=2 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.171e-59
Identity = 109/193 (56.48%), Postives = 141/193 (73.06%), Query Frame = 2 
Query:    5 TQDVAQEETGWKLVHGDVFRPPTNSDLLCVYVGTGVQFFGMMLVTMIFALLGFLSPSN*GGLMTAMLLLWVFMGLFAGYASARLYKLFKGTEWKRIAFRTAITFPGIVSAIFFVLNALIWGQKSSGAVPFGTMFALIVLWFGISVPLVYVGSFVGFKKPAIEDPVKTNKIPRQIPEQAWYMNPIFSIPIGGIL 583
            T+D AQEE GWKLVHGD+FRPP    LL V++G+G Q   M  VT+ FA LGFLSP+N G LMT  ++LWV +G  AGY +AR YK F G +WK     T+   PGIV A FF++N ++WG+ SS A+PFGT+ A++ LWF ISVPL ++G++ GFKK AIE PV+TN+IPRQIPEQ++Y  P+  I +GGIL
Sbjct:  338 TED-AQEEFGWKLVHGDIFRPPRKGMLLSVFLGSGTQILIMTFVTLFFACLGFLSPANRGALMTCAVVLWVLLGTPAGYVAARFYKSFGGEKWKTNVLLTSFLCPGIVFADFFIMNLILWGEGSSAAIPFGTLVAILALWFCISVPLTFIGAYFGFKKNAIEHPVRTNQIPRQIPEQSFYTKPLPGIIMGGIL 529
[Close]
BLAST of FC925271 vs. ExPASy Swiss-Prot
Match: TM9S2_HUMAN (Transmembrane 9 superfamily member 2 OS=Homo sapiens GN=TM9SF2 PE=1 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.171e-59
Identity = 109/193 (56.48%), Postives = 141/193 (73.06%), Query Frame = 2 
Query:    5 TQDVAQEETGWKLVHGDVFRPPTNSDLLCVYVGTGVQFFGMMLVTMIFALLGFLSPSN*GGLMTAMLLLWVFMGLFAGYASARLYKLFKGTEWKRIAFRTAITFPGIVSAIFFVLNALIWGQKSSGAVPFGTMFALIVLWFGISVPLVYVGSFVGFKKPAIEDPVKTNKIPRQIPEQAWYMNPIFSIPIGGIL 583
            T+D AQEE GWKLVHGD+FRPP    LL V++G+G Q   M  VT+ FA LGFLSP+N G LMT  ++LWV +G  AGY +AR YK F G +WK     T+   PGIV A FF++N ++WG+ SS A+PFGT+ A++ LWF ISVPL ++G++ GFKK AIE PV+TN+IPRQIPEQ++Y  P+  I +GGIL
Sbjct:  339 TED-AQEEFGWKLVHGDIFRPPRKGMLLSVFLGSGTQILIMTFVTLFFACLGFLSPANRGALMTCAVVLWVLLGTPAGYVAARFYKSFGGEKWKTNVLLTSFLCPGIVFADFFIMNLILWGEGSSAAIPFGTLVAILALWFCISVPLTFIGAYFGFKKNAIEHPVRTNQIPRQIPEQSFYTKPLPGIIMGGIL 530
[Close]
BLAST of FC925271 vs. ExPASy Swiss-Prot
Match: TM9S4_RAT (Transmembrane 9 superfamily member 4 OS=Rattus norvegicus GN=Tm9sf4 PE=2 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 1.690e-58
Identity = 105/187 (56.15%), Postives = 137/187 (73.26%), Query Frame = 2 
Query:   23 EETGWKLVHGDVFRPPTNSDLLCVYVGTGVQFFGMMLVTMIFALLGFLSPSN*GGLMTAMLLLWVFMGLFAGYASARLYKLFKGTEWKRIAFRTAITFPGIVSAIFFVLNALIWGQKSSGAVPFGTMFALIVLWFGISVPLVYVGSFVGFKKPAIEDPVKTNKIPRQIPEQAWYMNPIFSIPIGGIL 583
            EE+GWKLVHGDVFRPP    +L   +G+G+Q F M+L+ +  A+LG LSPS+ G LMT    L++FMG+F G+++ RLY+  KG  WK+ AF TA  +PG+V  I FVLN  IWG+ SSGAVPF TM AL+ +WFGIS+PLVY+G + GF+K   ++PV+TN+IPRQIPEQ WYMN    I + GIL
Sbjct:  324 EESGWKLVHGDVFRPPQYPMILSSLLGSGIQLFCMILIVIFVAMLGMLSPSSRGALMTTACFLFMFMGVFGGFSAGRLYRTLKGHRWKKGAFCTATLYPGVVFGICFVLNCFIWGKHSSGAVPFPTMVALLCMWFGISLPLVYLGYYFGFRKQPYDNPVRTNQIPRQIPEQRWYMNRFVGILMAGIL 510
[Close]
BLAST of FC925271 vs. ExPASy Swiss-Prot
Match: TM9S4_PONAB (Transmembrane 9 superfamily member 4 OS=Pongo abelii GN=TM9SF4 PE=2 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 1.690e-58
Identity = 105/187 (56.15%), Postives = 137/187 (73.26%), Query Frame = 2 
Query:   23 EETGWKLVHGDVFRPPTNSDLLCVYVGTGVQFFGMMLVTMIFALLGFLSPSN*GGLMTAMLLLWVFMGLFAGYASARLYKLFKGTEWKRIAFRTAITFPGIVSAIFFVLNALIWGQKSSGAVPFGTMFALIVLWFGISVPLVYVGSFVGFKKPAIEDPVKTNKIPRQIPEQAWYMNPIFSIPIGGIL 583
            EE+GWKLVHGDVFRPP    +L   +G+G+Q F M+L+ +  A+LG LSPS+ G LMT    L++FMG+F G+++ RLY+  KG  WK+ AF TA  +PG+V  I FVLN  IWG+ SSGAVPF TM AL+ +WFGIS+PLVY+G + GF+K   ++PV+TN+IPRQIPEQ WYMN    I + GIL
Sbjct:  323 EESGWKLVHGDVFRPPQYPMILSSLLGSGIQLFCMILIVIFVAMLGMLSPSSRGALMTTACFLFMFMGVFGGFSAGRLYRTLKGHRWKKGAFCTATLYPGVVFGICFVLNCFIWGKHSSGAVPFPTMVALLCMWFGISLPLVYLGYYFGFRKQPYDNPVRTNQIPRQIPEQRWYMNRFVGILMAGIL 509
[Close]
BLAST of FC925271 vs. ExPASy Swiss-Prot
Match: TM9S4_MOUSE (Transmembrane 9 superfamily member 4 OS=Mus musculus GN=Tm9sf4 PE=2 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 1.690e-58
Identity = 105/187 (56.15%), Postives = 137/187 (73.26%), Query Frame = 2 
Query:   23 EETGWKLVHGDVFRPPTNSDLLCVYVGTGVQFFGMMLVTMIFALLGFLSPSN*GGLMTAMLLLWVFMGLFAGYASARLYKLFKGTEWKRIAFRTAITFPGIVSAIFFVLNALIWGQKSSGAVPFGTMFALIVLWFGISVPLVYVGSFVGFKKPAIEDPVKTNKIPRQIPEQAWYMNPIFSIPIGGIL 583
            EE+GWKLVHGDVFRPP    +L   +G+G+Q F M+L+ +  A+LG LSPS+ G LMT    L++FMG+F G+++ RLY+  KG  WK+ AF TA  +PG+V  I FVLN  IWG+ SSGAVPF TM AL+ +WFGIS+PLVY+G + GF+K   ++PV+TN+IPRQIPEQ WYMN    I + GIL
Sbjct:  324 EESGWKLVHGDVFRPPQYPMILSSLLGSGIQLFCMILIVIFVAMLGMLSPSSRGALMTTACFLFMFMGVFGGFSAGRLYRTLKGHRWKKGAFCTATLYPGVVFGICFVLNCFIWGKHSSGAVPFPTMVALLCMWFGISLPLVYLGYYFGFRKQPYDNPVRTNQIPRQIPEQRWYMNRFVGILMAGIL 510
[Close]
BLAST of FC925271 vs. ExPASy Swiss-Prot
Match: TM9S4_HUMAN (Transmembrane 9 superfamily member 4 OS=Homo sapiens GN=TM9SF4 PE=1 SV=2)

HSP 1 Score: 225.328 bits (573), Expect = 1.690e-58
Identity = 105/187 (56.15%), Postives = 137/187 (73.26%), Query Frame = 2 
Query:   23 EETGWKLVHGDVFRPPTNSDLLCVYVGTGVQFFGMMLVTMIFALLGFLSPSN*GGLMTAMLLLWVFMGLFAGYASARLYKLFKGTEWKRIAFRTAITFPGIVSAIFFVLNALIWGQKSSGAVPFGTMFALIVLWFGISVPLVYVGSFVGFKKPAIEDPVKTNKIPRQIPEQAWYMNPIFSIPIGGIL 583
            EE+GWKLVHGDVFRPP    +L   +G+G+Q F M+L+ +  A+LG LSPS+ G LMT    L++FMG+F G+++ RLY+  KG  WK+ AF TA  +PG+V  I FVLN  IWG+ SSGAVPF TM AL+ +WFGIS+PLVY+G + GF+K   ++PV+TN+IPRQIPEQ WYMN    I + GIL
Sbjct:  323 EESGWKLVHGDVFRPPQYPMILSSLLGSGIQLFCMILIVIFVAMLGMLSPSSRGALMTTACFLFMFMGVFGGFSAGRLYRTLKGHRWKKGAFCTATLYPGVVFGICFVLNCFIWGKHSSGAVPFPTMVALLCMWFGISLPLVYLGYYFGFRKQPYDNPVRTNQIPRQIPEQRWYMNRFVGILMAGIL 509
[Close]
BLAST of FC925271 vs. ExPASy Swiss-Prot
Match: TM9S4_BOVIN (Transmembrane 9 superfamily member 4 OS=Bos taurus GN=TM9SF4 PE=2 SV=2)

HSP 1 Score: 225.328 bits (573), Expect = 1.690e-58
Identity = 105/187 (56.15%), Postives = 137/187 (73.26%), Query Frame = 2 
Query:   23 EETGWKLVHGDVFRPPTNSDLLCVYVGTGVQFFGMMLVTMIFALLGFLSPSN*GGLMTAMLLLWVFMGLFAGYASARLYKLFKGTEWKRIAFRTAITFPGIVSAIFFVLNALIWGQKSSGAVPFGTMFALIVLWFGISVPLVYVGSFVGFKKPAIEDPVKTNKIPRQIPEQAWYMNPIFSIPIGGIL 583
            EE+GWKLVHGDVFRPP    +L   +G+G+Q F M+L+ +  A+LG LSPS+ G LMT    L++FMG+F G+++ RLY+  KG  WK+ AF TA  +PG+V  I FVLN  IWG+ SSGAVPF TM AL+ +WFGIS+PLVY+G + GF+K   ++PV+TN+IPRQIPEQ WYMN    I + GIL
Sbjct:  323 EESGWKLVHGDVFRPPQYPMILSSLLGSGIQLFCMILIVIFVAMLGMLSPSSRGALMTTACFLFMFMGVFGGFSAGRLYRTLKGHRWKKGAFCTATLYPGVVFGICFVLNCFIWGKHSSGAVPFPTMVALLCMWFGISLPLVYLGYYFGFRKQPYDNPVRTNQIPRQIPEQRWYMNRFVGILMAGIL 509
The following BLAST results are available for this feature:
BLAST of FC925271 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
PHG1A_DICDI9.254e-6559.26Putative phagocytic receptor 1a OS=Dictyostelium d... [more]
TM9S2_RAT1.171e-5956.48Transmembrane 9 superfamily member 2 OS=Rattus nor... [more]
TM9S2_PONAB1.171e-5956.48Transmembrane 9 superfamily member 2 OS=Pongo abel... [more]
TM9S2_MOUSE1.171e-5956.48Transmembrane 9 superfamily member 2 OS=Mus muscul... [more]
TM9S2_HUMAN1.171e-5956.48Transmembrane 9 superfamily member 2 OS=Homo sapie... [more]
TM9S4_RAT1.690e-5856.15Transmembrane 9 superfamily member 4 OS=Rattus nor... [more]
TM9S4_PONAB1.690e-5856.15Transmembrane 9 superfamily member 4 OS=Pongo abel... [more]
TM9S4_MOUSE1.690e-5856.15Transmembrane 9 superfamily member 4 OS=Mus muscul... [more]
TM9S4_HUMAN1.690e-5856.15Transmembrane 9 superfamily member 4 OS=Homo sapie... [more]
TM9S4_BOVIN1.690e-5856.15Transmembrane 9 superfamily member 4 OS=Bos taurus... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YB14FM1 TF Citrus clementina cDNA clone KN0AAP11YB14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925271 ID=FC925271; Name=FC925271; organism=Citrus clementina; type=EST; length=583bp
TGAGACCCAGGACGTAGCTCAAGAAGAGACAGGGTGGAAACTTGTTCATG
GTGATGTTTTCAGGCCCCCCACTAATTCGGATCTACTCTGTGTCTATGTC
GGAACTGGTGTCCAGTTTTTTGGAATGATGCTTGTTACTATGATCTTTGC
CCTTCTTGGTTTCCTCTCCCCTTCAAACTGAGGTGGGCTTATGACGGCTA
TGCTCCTTCTCTGGGTCTTCATGGGTCTTTTTGCTGGTTATGCCTCTGCT
CGCTTGTACAAGTTGTTTAAAGGAACTGAGTGGAAGAGAATTGCCTTCAG
AACTGCAATCACTTTCCCAGGAATTGTCTCAGCCATTTTCTTTGTCTTGA
ATGCTCTTATTTGGGGACAGAAATCGTCCGGGGCTGTGCCATTTGGGACC
ATGTTTGCTCTCATCGTCTTGTGGTTTGGAATCTCAGTACCACTAGTATA
TGTTGGCAGTTTTGTTGGGTTCAAGAAGCCAGCAATTGAGGATCCGGTGA
AGACAAACAAAATCCCAAGGCAAATCCCTGAGCAGGCTTGGTATATGAAC
CCCATCTTCTCAATTCCCATTGGAGGGATACTT
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