FC925277

Overview
NameFC925277
Unique NameFC925277
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length748
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1973 contig Ccv1_Contig1973:1..748. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925277 vs. ExPASy Swiss-Prot
Match: WNK4_ARATH (Probable serine/threonine-protein kinase WNK4 OS=Arabidopsis thaliana GN=WNK4 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.104e-14
Identity = 51/126 (40.48%), Postives = 72/126 (57.14%), Query Frame = 2
Query:  344 NDDASSNGSVSSFKYSSWDYHSGNEDDSEFSHRAGEPLCIARATQKSTRFCPEAA--MNNDRCNSEDVNSRKACRSNSNNHRKLSRIRSLVDVRSQLLHRSLVEEIHKRRLFKTVGAVENIGFHEP 715
            +D+  S  S  S  YS+ +Y + +E  S+          +   T   TRFCPE +  + + + N+   +S    RS ++++R L+R RSLVDV+ QLLHRS  EE  KRRLFKTVG VE +GF  P
Sbjct:  443 HDETYSQSSSHSGSYSNLNYIAVDEYSSQSP--------VMSRTHNMTRFCPEESSHLQSGQANAYAASS-STNRSLASDNRTLTRNRSLVDVQRQLLHRSPGEEARKRRLFKTVGDVETVGFQSP 559          
BLAST of FC925277 vs. ExPASy Swiss-Prot
Match: WNK8_ORYSJ (Probable serine/threonine-protein kinase WNK8 OS=Oryza sativa subsp. japonica GN=WNK8 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.490e-11
Identity = 41/105 (39.05%), Postives = 59/105 (56.19%), Query Frame = 2
Query:  413 NEDDSEFSHRAGEPLCIARATQ----KSTRFCPEAAMNNDRCNSEDVNSRKACRSNSNNHRKLSRIRSLVDVRSQLLHRSLVEEIHKRRLFKTVGAVENIGFHEP 715
            ++DDS  S  +     I+   Q     S+R  P +A  ++         R+         R++SR RS+VD+RSQLLHR+LVEE++KR  F TVGAV +IGF +P
Sbjct:  485 DDDDSSTSSLSAAVSAISLQQQHCSASSSRLGPASASASEDGGGHAGRPRQREGEEERRRRRMSRNRSMVDMRSQLLHRTLVEELNKRLFFNTVGAVHDIGFRDP 589          
BLAST of FC925277 vs. ExPASy Swiss-Prot
Match: WNK7_ORYSJ (Probable serine/threonine-protein kinase WNK7 OS=Oryza sativa subsp. japonica GN=WNK7 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 4.247e-11
Identity = 46/131 (35.11%), Postives = 65/131 (49.62%), Query Frame = 2
Query:  338 LGNDDASSNGSVSSFKYSSWDYHSGNEDDSEFSHRAGEPLCIARATQKSTRFCPEAAMNNDRCNSEDVNSRKACRSNSNNHRKLSRIRSLVDVRSQLLHRSLVEEIHKRRLFKTVGAVENIGFHEPANCAA 730
            + +DD SS  S+S+   S+   H   +  S  S R G                  A+ + D         R+         R++SR RS+VD+RSQLLHR+LVEE++KR  F TVGAV +IGF +P   A+
Sbjct:  484 VSDDDDSSTSSLSA-AVSASSLHQQQQHCSASSSRLGPA---------------SASASEDGGGGHAGRPRQREGEEERRRRRMSRNRSMVDMRSQLLHRTLVEELNKRLFFNTVGAVHDIGFRDPTAAAS 598          
The following BLAST results are available for this feature:
BLAST of FC925277 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
WNK4_ARATH4.104e-1440.48Probable serine/threonine-protein kinase WNK4 OS=A... [more]
WNK8_ORYSJ2.490e-1139.05Probable serine/threonine-protein kinase WNK8 OS=O... [more]
WNK7_ORYSJ4.247e-1135.11Probable serine/threonine-protein kinase WNK7 OS=O... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP3YF07FM1 TF Citrus clementina cDNA clone KN0AAP3YF07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925277 ID=FC925277; Name=FC925277; organism=Citrus clementina; type=EST; length=748bp
CTGATTGGGAACCACTTGAAATTGCTGAAATGATAGAGCAAGAAATATCT
TCTTTGGTCCCGAATTGGAAGGAATGTGGCTCTCCTCAATTCTGTCATCA
ACACAGCTTTAGCTATGAAGATGAAGATGATGACAATGACGACGATGGAA
TCTACCACCCTTTCTACTCTAACTCTTCCCATTCCTCGTCGCACGCTTCT
CTCCCAGCTTTCTTCACAAACAATGCGAATTCTCCTCCCAGTTGGCTTCA
ACAAGGTATGTTTTATAAACCCGAGACATCTGTTGAACCAACCAGAACCC
CCGCTAATTAATGATCTTGGTTAATGCAGAAGACTTGTTGGGCAATGATG
ATGCGAGTTCCAATGGTTCTGTTAGTTCTTTCAAGTACTCAAGCTGGGAT
TACCACTCAGGCAATGAAGATGATTCTGAGTTCAGCCACAGAGCAGGAGA
GCCACTCTGCATTGCAAGGGCAACTCAAAAATCTACAAGATTCTGCCCTG
AAGCTGCTATGAACAATGACCGCTGCAATAGTGAAGATGTAAATTCCCGG
AAAGCTTGTAGGTCAAACAGTAATAACCACAGGAAATTATCCAGGATTCG
GTCACTGGTGGATGTACGGAGCCAGTTGTTGCACAGGTCACTGGTGGAGG
AAATCCACAAGAGGCGACTGTTTAAGACGGTTGGTGCTGTTGAGAACATT
GGGTTTCATGAGCCAGCTAATTGTGCCGCTTACCGAAGATGCCCCGTT
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