FC925293

Overview
NameFC925293
Unique NameFC925293
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length748
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1978 contig Ccv1_Contig1978:1..749. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925293 vs. ExPASy Swiss-Prot
Match: NP1L1_MOUSE (Nucleosome assembly protein 1-like 1 OS=Mus musculus GN=Nap1l1 PE=1 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 3.023e-33
Identity = 83/218 (38.07%), Postives = 115/218 (52.75%), Query Frame = 1
Query:  139 LVGVLKNKLQNLAGQHSDVLEKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVNGVVEGAPNEVA-MDQEEDKATEE-------------------KGVPDFWLTAMKNNDVLSEEITERDEGALKFLKDI--KWFRIDDPKGFKLEFYFDPNPYFKNSVLTKTYHMIDE---------DEPILEKAIGTEIEWYPG 699
            ++  L+ +L  L    +  +E L   V++RV  L+ +Q +  ++EAKF+EE   LE KY  LYQP++ KR+EI+N + E    E      EED+ +EE                   KG+P+FWLT  KN D+LS+ + E DE  LK LKDI  K+     P  F LEF+F+PN YF N VLTKTY M  E         D P +    G +I+W  G
Sbjct:   48 ILAALQERLDGLVDTPTGYIESLPKVVKRRVNALKNLQVKCAQIEAKFYEEVHDLERKYAVLYQPLFDKRFEIINAIYEPTEEECEWKPDEEDEVSEELKEKAKIEDEKKDEEKEDPKGIPEFWLTVFKNVDLLSDMVQEHDEPILKHLKDIKVKFSDAGQPMSFVLEFHFEPNDYFTNEVLTKTYRMRSEPDDSDPFSFDGPEIMGCTGCQIDWKKG 265          
BLAST of FC925293 vs. ExPASy Swiss-Prot
Match: NP1L1_PONAB (Nucleosome assembly protein 1-like 1 OS=Pongo abelii GN=NAP1L1 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.734e-33
Identity = 83/218 (38.07%), Postives = 115/218 (52.75%), Query Frame = 1
Query:  139 LVGVLKNKLQNLAGQHSDVLEKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVNGVVEGAPNEVA-MDQEEDKATEE-------------------KGVPDFWLTAMKNNDVLSEEITERDEGALKFLKDI--KWFRIDDPKGFKLEFYFDPNPYFKNSVLTKTYHMIDE---------DEPILEKAIGTEIEWYPG 699
            ++  L+ +L  L    +  +E L   V++RV  L+ +Q +  ++EAKF+EE   LE KY  LYQP++ KR+EI+N + E    E      EED+ +EE                   KG+P+FWLT  KN D+LS+ + E DE  LK LKDI  K+     P  F LEF+F+PN YF N VLTKTY M  E         D P +    G +I+W  G
Sbjct:   48 ILAALQERLDGLVETPTGYIESLPRVVKRRVNALKNLQVKCAQIEAKFYEEVHDLERKYAVLYQPLFDKRFEIINAIYEPTEEECEWKPDEEDEISEELKEKAKIEDEKKDEEKEDPKGIPEFWLTVFKNVDLLSDMVQEHDEPILKHLKDIKVKFSGAGQPMSFVLEFHFEPNEYFTNEVLTKTYRMRSEPDDSDPFSFDGPEIMGCTGCQIDWKKG 265          
BLAST of FC925293 vs. ExPASy Swiss-Prot
Match: NP1L1_HUMAN (Nucleosome assembly protein 1-like 1 OS=Homo sapiens GN=NAP1L1 PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.734e-33
Identity = 83/218 (38.07%), Postives = 115/218 (52.75%), Query Frame = 1
Query:  139 LVGVLKNKLQNLAGQHSDVLEKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVNGVVEGAPNEVA-MDQEEDKATEE-------------------KGVPDFWLTAMKNNDVLSEEITERDEGALKFLKDI--KWFRIDDPKGFKLEFYFDPNPYFKNSVLTKTYHMIDE---------DEPILEKAIGTEIEWYPG 699
            ++  L+ +L  L    +  +E L   V++RV  L+ +Q +  ++EAKF+EE   LE KY  LYQP++ KR+EI+N + E    E      EED+ +EE                   KG+P+FWLT  KN D+LS+ + E DE  LK LKDI  K+     P  F LEF+F+PN YF N VLTKTY M  E         D P +    G +I+W  G
Sbjct:   48 ILAALQERLDGLVETPTGYIESLPRVVKRRVNALKNLQVKCAQIEAKFYEEVHDLERKYAVLYQPLFDKRFEIINAIYEPTEEECEWKPDEEDEISEELKEKAKIEDEKKDEEKEDPKGIPEFWLTVFKNVDLLSDMVQEHDEPILKHLKDIKVKFSDAGQPMSFVLEFHFEPNEYFTNEVLTKTYRMRSEPDDSDPFSFDGPEIMGCTGCQIDWKKG 265          
BLAST of FC925293 vs. ExPASy Swiss-Prot
Match: NP1L1_BOVIN (Nucleosome assembly protein 1-like 1 OS=Bos taurus GN=NAP1L1 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.734e-33
Identity = 83/218 (38.07%), Postives = 115/218 (52.75%), Query Frame = 1
Query:  139 LVGVLKNKLQNLAGQHSDVLEKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVNGVVEGAPNEVA-MDQEEDKATEE-------------------KGVPDFWLTAMKNNDVLSEEITERDEGALKFLKDI--KWFRIDDPKGFKLEFYFDPNPYFKNSVLTKTYHMIDE---------DEPILEKAIGTEIEWYPG 699
            ++  L+ +L  L    +  +E L   V++RV  L+ +Q +  ++EAKF+EE   LE KY  LYQP++ KR+EI+N + E    E      EED+ +EE                   KG+P+FWLT  KN D+LS+ + E DE  LK LKDI  K+     P  F LEF+F+PN YF N VLTKTY M  E         D P +    G +I+W  G
Sbjct:   48 ILAALQERLDGLVETPTGYIESLPRVVKRRVNALKNLQVKCAQIEAKFYEEVHDLERKYAVLYQPLFDKRFEIINAIYEPTEEECEWKPDEEDEISEELKEKAKVEDEKKDEEKEDPKGIPEFWLTVFKNVDLLSDMVQEHDEPILKHLKDIKVKFSDAGQPMSFVLEFHFEPNEYFTNEVLTKTYRMRSEPDDSDPFSFDGPEIMGCTGCQIDWKKG 265          
BLAST of FC925293 vs. ExPASy Swiss-Prot
Match: YGNB_SCHPO (Putative nucleosome assembly protein C2D10.11C OS=Schizosaccharomyces pombe GN=SPBC2D10.11c PE=2 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 8.795e-33
Identity = 75/208 (36.06%), Postives = 123/208 (59.13%), Query Frame = 1
Query:  118 DEGARADLVGVLKN----------KLQNLAGQHSDVLEKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVNGVVEGAPNEVAMDQE--EDKATEEKGVPDFWLTAMKNNDVLSEEITERDEGALKFLKDIKWFRID-DPKGFKLEFYFDPNPYFKNSVLTKTYHMIDEDEP----ILEKAIGTEIEW 690
            D+ A  ++ G+L+N          +L +L G+ S  +E L PAV+ R+  L+ +Q + D ++ +F ++   LE KY+K YQP++++R EI+ GV E   +E+  ++E  ++   + KG+P+FWLT + N  ++ E IT  DE  L+ L DI++  +  D  G+KLEF FD N YF N +LTKTY+  D+  P    + + A G +I W
Sbjct:   48 DKSAHDEVSGLLRNNPAMLSMIEGRLSSLVGKSSGYIESLAPAVQNRITALKGLQKDCDAIQYEFRQKMLDLETKYEKKYQPIFSRRAEIIKGVSEPVDDELDHEEEIFQNNLPDPKGIPEFWLTCLHNVFLVGEMITPEDENVLRSLSDIRFTNLSGDVHGYKLEFEFDSNDYFTNKILTKTYYYKDDLSPSGEFLYDHAEGDKINW 255          
BLAST of FC925293 vs. ExPASy Swiss-Prot
Match: NP1L1_XENTR (Nucleosome assembly protein 1-like 1 OS=Xenopus tropicalis GN=nap1l1 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.559e-32
Identity = 84/218 (38.53%), Postives = 116/218 (53.21%), Query Frame = 1
Query:  139 LVGVLKNKLQNLAGQHSDVLEKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVNGVVEGAPNEV--AMDQEED---------KATEE---------KGVPDFWLTAMKNNDVLSEEITERDEGALKFLKDI--KWFRIDDPKGFKLEFYFDPNPYFKNSVLTKTYHMIDE---------DEPILEKAIGTEIEWYPG 699
            ++  L+ +L +L G  +  +E L   V++RV  L+ +Q +  ++EAKF+EE   LE KY  LYQP++ KR +I+N   E    E    +D+EED         K  EE         KG+P+FWLT  KN D+LS+ + E DE  LK LKDI  K+     P  F LEF+F+PN +F N VLTKTY M  E         D P +    G  I+W  G
Sbjct:   49 VLAALQERLDDLVGTPTGYIESLPKVVKRRVNALKNLQVKCAQIEAKFYEEVHELERKYAALYQPLFDKRSDIINATYEPTEEECEWKVDEEEDISGDLKDKAKLEEEKKDEEKEDPKGIPEFWLTVFKNVDLLSDMVQEHDEPILKHLKDIKVKFSEAGQPMSFTLEFHFEPNDFFTNEVLTKTYKMRSEPDESDPFSFDGPEIMGCTGCLIDWKKG 266          
BLAST of FC925293 vs. ExPASy Swiss-Prot
Match: NPL1A_XENLA (Nucleosome assembly protein 1-like 1-A OS=Xenopus laevis GN=nap1l1-A PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 4.365e-32
Identity = 84/217 (38.71%), Postives = 115/217 (53.00%), Query Frame = 1
Query:  139 LVGVLKNKLQNLAGQHSDVLEKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVNGVVE----------------GAPNEVAMDQEEDKATEE---KGVPDFWLTAMKNNDVLSEEITERDEGALKFLKDI--KWFRIDDPKGFKLEFYFDPNPYFKNSVLTKTYHMIDE---------DEPILEKAIGTEIEWYPG 699
            ++  L+ +L +L G  +  +E L   V++RV  L+ +Q +  ++EAKF+EE   LE KY  LYQP++ KR +I+N   E                G   E A  +EE K  E+   KG+P+FWLT  KN D+LS+ + E DE  LK LKDI  K+     P  F LEFYF+PN +F N VLTKTY M  E         D P +    G  I+W  G
Sbjct:   49 VLAALQERLDDLVGTPTGYIESLPKVVKRRVNALKNLQVKCAQIEAKFYEEVHELERKYAALYQPLFDKRSDIINATYEPTEEECEWKVEEEDISGDLKEKAKLEEEKKDEEKEDPKGIPEFWLTVFKNVDLLSDMLQEHDEPILKHLKDIKVKFSDAGQPMSFTLEFYFEPNEFFTNEVLTKTYKMRSEPDESDPFSFDGPEIMGCTGCLIDWKKG 265          
BLAST of FC925293 vs. ExPASy Swiss-Prot
Match: NP1L1_RAT (Nucleosome assembly protein 1-like 1 OS=Rattus norvegicus GN=Nap1l1 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 4.365e-32
Identity = 83/218 (38.07%), Postives = 115/218 (52.75%), Query Frame = 1
Query:  139 LVGVLKNKLQNLAGQHSDVLEKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVNGVVEGAPNEVA-MDQEEDKATEE-------------------KGVPDFWLTAMKNNDVLSEEITERDEGALKFLKDI--KWFRIDDPKGFKLEFYFDPNPYFKNSVLTKTYHMIDE---------DEPILEKAIGTEIEWYPG 699
            ++  L+ +L  L    +  +E L   V++RV  L+ +Q +  ++EAKF+EE   LE KY  LYQP++ KR+EI+N + E    E      EED+ +EE                   KG+P+FWLT  K ND+LS+ + E DE  LK LKDI  K+     P  F LEF+F+PN YF N VLTKTY M  E         D P +    G +I+W  G
Sbjct:   48 ILAALQERLDGLVDTPTGYIESLPKVVKRRVNALKNLQVKCAQIEAKFYEEVHDLERKYAVLYQPLFDKRFEIINAIYEPTEEECEWKPDEEDEVSEELKEKAKIEDEKKDEEKEDPKGIPEFWLTVFK-NDLLSDMVQEHDEPILKHLKDIKVKFSDAGQPMSFILEFHFEPNEYFTNEVLTKTYRMRSEPDDSDPFSFDGPEIMGCTGCQIDWKKG 264          
BLAST of FC925293 vs. ExPASy Swiss-Prot
Match: NPL1B_XENLA (Nucleosome assembly protein 1-like 1-B OS=Xenopus laevis GN=nap1l1-B PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.659e-31
Identity = 83/218 (38.07%), Postives = 115/218 (52.75%), Query Frame = 1
Query:  139 LVGVLKNKLQNLAGQHSDVLEKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVNGVVEGAPNEV--AMDQEED---------KATEE---------KGVPDFWLTAMKNNDVLSEEITERDEGALKFLKDI--KWFRIDDPKGFKLEFYFDPNPYFKNSVLTKTYHMIDE---------DEPILEKAIGTEIEWYPG 699
            ++  L+ +L +L G  +  +E L   V++RV  L+ +Q +  ++EAKF+EE   LE KY  LYQP + KR +I+N   E    E    +D+EED         K  EE         KG+P+FWLT  KN D+LS+ + E DE  LK LKDI  K+     P  F LEF+F+PN +F N +LTKTY M  E         D P +    G  I+W  G
Sbjct:   49 VLAALQERLDDLVGTPTGYIESLPKVVKRRVNALKNLQVKCAQIEAKFYEEVHELERKYAALYQPFFEKRSDIINASYEPTEEECEWKVDEEEDIAEDLKEKAKLEEEKKDEEKEDPKGIPEFWLTVFKNVDLLSDMVQEHDEPILKHLKDIKVKFSEAGQPMNFMLEFHFEPNEFFTNELLTKTYKMRSEPDESDPFSFDGPEIMGCTGCLIDWKKG 266          
BLAST of FC925293 vs. ExPASy Swiss-Prot
Match: NP1L4_RAT (Nucleosome assembly protein 1-like 4 OS=Rattus norvegicus GN=Nap1l4 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.128e-30
Identity = 82/221 (37.10%), Postives = 115/221 (52.04%), Query Frame = 1
Query:  139 LVGVLKNKLQNLAGQHSDVLEKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVNGVVE--------------------GAPNEVAMDQEEDKATEE---KGVPDFWLTAMKNNDVLSEEITERDEGALKFLKDIKWFRID--DPKGFKLEFYFDPNPYFKNSVLTKTYHMIDEDE---------PILEKAIGTEIEWYPG 699
            ++  L+ +L N++   S  +E L  AV++R+  L+++Q     +EAKF+EE   LE KY  LYQP++ KR E + G VE                       N+V + ++E  A EE   KG+P+FW T  +N D+LSE + E DE  LK L+DIK    D   P  F LEF+F+PN YF N VLTKTY M  E +         P +    G  I+W  G
Sbjct:   37 VLAALQERLDNVSHTPSSYIETLPKAVKRRINALKQLQVRCAHIEAKFYEEVHDLERKYAALYQPLFDKRREFITGDVEPTDAESAWHSENEEDDKLAGDMKNKVVIAEKEAAAVEELNPKGIPEFWFTIFRNVDMLSELVQEYDEPILKHLQDIKVKFSDPGQPMSFVLEFHFEPNDYFTNPVLTKTYKMKSEPDKADPFSFEGPEIVDCDGCTIDWKKG 257          
The following BLAST results are available for this feature:
BLAST of FC925293 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
NP1L1_MOUSE3.023e-3338.07Nucleosome assembly protein 1-like 1 OS=Mus muscul... [more]
NP1L1_PONAB6.734e-3338.07Nucleosome assembly protein 1-like 1 OS=Pongo abel... [more]
NP1L1_HUMAN6.734e-3338.07Nucleosome assembly protein 1-like 1 OS=Homo sapie... [more]
NP1L1_BOVIN6.734e-3338.07Nucleosome assembly protein 1-like 1 OS=Bos taurus... [more]
YGNB_SCHPO8.795e-3336.06Putative nucleosome assembly protein C2D10.11C OS=... [more]
NP1L1_XENTR2.559e-3238.53Nucleosome assembly protein 1-like 1 OS=Xenopus tr... [more]
NPL1A_XENLA4.365e-3238.71Nucleosome assembly protein 1-like 1-A OS=Xenopus ... [more]
NP1L1_RAT4.365e-3238.07Nucleosome assembly protein 1-like 1 OS=Rattus nor... [more]
NPL1B_XENLA1.659e-3138.07Nucleosome assembly protein 1-like 1-B OS=Xenopus ... [more]
NP1L4_RAT3.128e-3037.10Nucleosome assembly protein 1-like 4 OS=Rattus nor... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YF16FM1 TF Citrus clementina cDNA clone KN0AAP3YF16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925293 ID=FC925293; Name=FC925293; organism=Citrus clementina; type=EST; length=748bp
CCTAGGGTTTTAGCTCCCTATCCCCTCGCTCTCTCTAAAACGCCGTCGCT
TCTTCCTCCGCCGACAATGAGCGCCGACAAAGATAACTTCAACGTTACAG
ATCTCCGCGCCTCTCTTGATGAAGGGGCTCGAGCTGACCTCGTGGGTGTT
CTGAAGAATAAACTTCAGAACCTTGCTGGGCAGCACTCTGATGTTCTCGA
GAAACTGACTCCAGCAGTCAGGAAGCGTGTTGAGGTTCTCAGAGAGATCC
AGAGTGAACATGATGAATTGGAGGCAAAATTTTTTGAGGAGAGAGCAGCA
CTGGAAGCCAAATATCAAAAATTGTATCAGCCTATGTACACCAAGAGATA
TGAGATTGTCAATGGTGTTGTTGAAGGGGCCCCAAATGAAGTTGCAATGG
ACCAGGAAGAGGATAAAGCCACTGAAGAGAAAGGAGTGCCGGACTTCTGG
CTTACTGCAATGAAAAATAATGATGTCCTATCTGAGGAAATTACTGAGCG
TGATGAAGGAGCTCTCAAGTTTCTCAAAGACATTAAGTGGTTTAGGATTG
ATGATCCAAAGGGATTCAAGCTTGAATTCTACTTTGACCCCAATCCATAC
TTCAAGAACTCTGTCTTGACAAAGACCTATCACATGATTGATGAAGATGA
GCCTATTCTTGAGAAAGCTATAGGGACGGAGATTGAATGGTATCCAGGGA
AATGCTTGACACAGAAGCTCCTTAAGAAGAAGCCAAAGAAGGGATCAA
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