FC925365

Overview
NameFC925365
Unique NameFC925365
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length551
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14628 contig Ccv1_Contig14628:1..551. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
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BLAST of FC925365 vs. ExPASy Swiss-Prot
Match: YMF16_ARATH (Uncharacterized tatC-like protein ymf16 OS=Arabidopsis thaliana GN=YMF16 PE=2 SV=2)

HSP 1 Score: 236.884 bits (603), Expect = 4.958e-62
Identity = 121/170 (71.18%), Postives = 125/170 (73.53%), Query Frame = 3 
Query:   15 FIFHEFYFPLETLPGEVRIRSVWILIGLGLTWFTCYWFSEEXXXXXXXXXXXXXXDSYFVCTQLTEAPPTYVATSSIACSYFVFPLISYQIWCFLIPSCYGEQRAKYNRXXXXXXXXXXXXXXXXXSRVVPNVWHFPYFVGATSTNLLMIKLQPNIYDYIMLTVRILFIS 524
            +I +EF F LET+ GEVRIRSV ILIGLGLTWFTCYWFSEE              D YFVCTQLTEA  T+VATSSIACSYFVFPLISYQIWCFLIPSCYGEQR KYNR                 S VVPNVWHF YFVGATSTN LMIKLQP IYDYIMLTVRI FIS
Sbjct:    5 YISYEFNFALETILGEVRIRSVRILIGLGLTWFTCYWFSEELIFLLALPFLTLPFDLYFVCTQLTEAFSTFVATSSIACSYFVFPLISYQIWCFLIPSCYGEQRTKYNRFFYLSGFCFFLFLFLTLSWVVPNVWHFLYFVGATSTNSLMIKLQPKIYDYIMLTVRISFIS 174
[Close]
BLAST of FC925365 vs. ExPASy Swiss-Prot
Match: YMF16_MARPO (Uncharacterized tatC-like protein ymf16 OS=Marchantia polymorpha GN=YMF16 PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 3.450e-47
Identity = 95/164 (57.93%), Postives = 107/164 (65.24%), Query Frame = 3 
Query:   36 FPLETLPGEVRIRSVWILIGLGLTWFTCYWFSEEXXXXXXXXXXXXXX-DSYFVCTQLTEAPPTYVATSSIACSYFVFPLISYQIWCFLIPSCYGEQRAKYNRXXXXXXXXXXXXXXXXXSRVVPNVWHFPYFVGATSTNLLMIKLQPNIYDYIMLTVRILFIS 524
            F L+T+  EVRIR  WILI    TWFTCYWFSEE               DS F+CTQLTEA  TYV TS I+C YF+FP +SYQIWCFL+PSCY EQR KYN+                   +VPNVWHF Y +  TSTNLL+IKLQP I+DYIMLTVRILFIS
Sbjct:    3 FVLKTILEEVRIRVFWILICFSFTWFTCYWFSEEFIFLLAKPFLTLPYLDSSFICTQLTEALSTYVTTSLISCFYFLFPFLSYQIWCFLMPSCYEEQRKKYNKLFYLSGFCFFLFFFVTFVWIVPNVWHFLYKLSTTSTNLLIIKLQPKIFDYIMLTVRILFIS 166
The following BLAST results are available for this feature:
BLAST of FC925365 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
YMF16_ARATH4.958e-6271.18Uncharacterized tatC-like protein ymf16 OS=Arabido... [more]
YMF16_MARPO3.450e-4757.93Uncharacterized tatC-like protein ymf16 OS=Marchan... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP11YD04FM1 TF Citrus clementina cDNA clone KN0AAP11YD04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925365 ID=FC925365; Name=FC925365; organism=Citrus clementina; type=EST; length=551bp
TTGAATTACTCCCATTTATATTCCATGAATTTTATTTCCCATTGGAAACT
CTTCCAGGAGAAGTTCGAATCCGTTCCGTTTGGATATTGATTGGTCTTGG
TTTGACATGGTTTACGTGTTACTGGTTCTCGGAAGAGTTAATATTTCTAT
TAACTAAACCCTTTCTTACCCTGCCTTTGGACTCGTATTTTGTTTGTACA
CAATTAACGGAGGCCCCTCCCACATATGTTGCAACGTCCTCAATAGCATG
CTCTTACTTCGTCTTTCCTTTAATAAGTTATCAAATTTGGTGCTTTTTGA
TCCCTAGTTGCTATGGGGAACAAAGGGCGAAATACAATCGATTCTTCTAT
TTAAGTGGTTTTTGCTTTTTCTTCTTCCTGTTCCTAACTTTTTCCCGGGT
AGTTCCCAATGTTTGGCACTTTCCATACTTCGTGGGTGCAACATCAACAA
ATTTGCTCATGATCAAGTTACAACCTAACATCTATGACTATATTATGTTA
ACTGTTCGTATTTTGTTCATTTCCATCCGTATGCCCTCCCGTACCTGTAA
T
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