FC925486

Overview
NameFC925486
Unique NameFC925486
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length567
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15332 contig Ccv1_Contig15332:127..693. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925486 vs. ExPASy Swiss-Prot
Match: CYSK_CITLA (Cysteine synthase OS=Citrullus lanatus PE=2 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 4.047e-70
Identity = 133/148 (89.86%), Postives = 140/148 (94.59%), Query Frame = 2
Query:  122 SVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFEN 565
            S IAKDVTELIG TPLVYLNR+VDGCVAR+AAKLEMMEPCSSVKDRIGYSMI+DAE KGLI PGESVLIEPTSGNTGIGLAF+AAAKGYRLII MPASMSLERR +L AFGAELVLTDPARGMKGAVQKAEEI+ KTPNSY+LQQFEN
Sbjct:    6 STIAKDVTELIGNTPLVYLNRVVDGCVARVAAKLEMMEPCSSVKDRIGYSMISDAENKGLITPGESVLIEPTSGNTGIGLAFIAAAKGYRLIICMPASMSLERRTILRAFGAELVLTDPARGMKGAVQKAEEIKAKTPNSYILQQFEN 153          
BLAST of FC925486 vs. ExPASy Swiss-Prot
Match: CYSK_SPIOL (Cysteine synthase OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 257.684 bits (657), Expect = 2.900e-68
Identity = 128/146 (87.67%), Postives = 138/146 (94.52%), Query Frame = 2
Query:  128 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFEN 565
            IAKDVTELIGKTPLVYLN + DGCVAR+AAKLE MEPCSSVKDRIG+SMI DAE+ GLI PGESVLIEPTSGNTGIGLAF+AAAKGY+LIITMPASMSLERR +L AFGAEL+LTDPA+GMKGAVQKAEEIRDKTPNSY+LQQFEN
Sbjct:    8 IAKDVTELIGKTPLVYLNTVADGCVARVAAKLEGMEPCSSVKDRIGFSMITDAEKSGLITPGESVLIEPTSGNTGIGLAFIAAAKGYKLIITMPASMSLERRTILRAFGAELILTDPAKGMKGAVQKAEEIRDKTPNSYILQQFEN 153          
BLAST of FC925486 vs. ExPASy Swiss-Prot
Match: CYSK_SOLTU (Cysteine synthase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 5.470e-67
Identity = 124/146 (84.93%), Postives = 137/146 (93.84%), Query Frame = 2
Query:  128 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFEN 565
            IAKDVTELIG TPLVYLN +VDGCVAR+AAKLE MEPCSSVKDRIGYSMI DAEEKGLI+PGESVLIEPTSGNTG+GLAFMAAAKGY+LIITMP+SMSLERR++L  F +ELVLTDPA+GMKGA+ KAEEI+ KTPNSY+LQQFEN
Sbjct:    8 IAKDVTELIGNTPLVYLNNVVDGCVARVAAKLESMEPCSSVKDRIGYSMITDAEEKGLIKPGESVLIEPTSGNTGVGLAFMAAAKGYKLIITMPSSMSLERRIILRGFRSELVLTDPAKGMKGAISKAEEIKAKTPNSYILQQFEN 153          
BLAST of FC925486 vs. ExPASy Swiss-Prot
Match: CYSK_WHEAT (Cysteine synthase OS=Triticum aestivum GN=CYS1 PE=2 SV=1)

HSP 1 Score: 249.21 bits (635), Expect = 1.032e-65
Identity = 122/146 (83.56%), Postives = 134/146 (91.78%), Query Frame = 2
Query:  128 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFEN 565
            IAKDVTELIG TPLVYLN++ DGCV R+AAKLE MEPCSSVKDRIGYSMI DAEEKG I PG+SVLIEPTSGNTGIGLAFMAAAKGYRL++TMPASMS+ERR++L AFGAEL+LTDP  GMKGAVQKAEE+  KTPNSY+LQQFEN
Sbjct:    9 IAKDVTELIGNTPLVYLNKVTDGCVGRVAAKLESMEPCSSVKDRIGYSMITDAEEKGFIVPGKSVLIEPTSGNTGIGLAFMAAAKGYRLVLTMPASMSMERRIILKAFGAELILTDPLLGMKGAVQKAEELAAKTPNSYILQQFEN 154          
BLAST of FC925486 vs. ExPASy Swiss-Prot
Match: CYSK1_BRAJU (Cysteine synthase OS=Brassica juncea PE=2 SV=1)

HSP 1 Score: 249.21 bits (635), Expect = 1.032e-65
Identity = 122/148 (82.43%), Postives = 137/148 (92.57%), Query Frame = 2
Query:  122 SVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFEN 565
            S IAKDVTELIG TPLVYLN + +GCV R+AAKLEMMEPCSSVKDRIG+SMI+DAE+KGLI+PGESVLIEPTSGNTG+GLAF AAAKGY+LIITMPASMS+ERR++LLAFG ELVLTDPA+GMKGA+ KAEEI  KTPN Y+LQQFEN
Sbjct:    3 SRIAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEQKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSVERRIILLAFGVELVLTDPAKGMKGAIAKAEEILAKTPNGYMLQQFEN 150          
BLAST of FC925486 vs. ExPASy Swiss-Prot
Match: CYSK1_ARATH (Cysteine synthase OS=Arabidopsis thaliana GN=OASA1 PE=1 SV=2)

HSP 1 Score: 248.054 bits (632), Expect = 2.298e-65
Identity = 122/148 (82.43%), Postives = 136/148 (91.89%), Query Frame = 2
Query:  122 SVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFEN 565
            S IAKDVTELIG TPLVYLN + +GCV R+AAKLEMMEPCSSVKDRIG+SMI+DAE+KGLI+PGESVLIEPTSGNTG+GLAF AAAKGY+LIITMPASMS ERR++LLAFG ELVLTDPA+GMKGA+ KAEEI  KTPN Y+LQQFEN
Sbjct:    3 SRIAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPAKGMKGAIAKAEEILAKTPNGYMLQQFEN 150          
BLAST of FC925486 vs. ExPASy Swiss-Prot
Match: CYSK1_ORYSJ (Cysteine synthase OS=Oryza sativa subsp. japonica GN=RCS1 PE=2 SV=2)

HSP 1 Score: 247.669 bits (631), Expect = 3.001e-65
Identity = 122/146 (83.56%), Postives = 134/146 (91.78%), Query Frame = 2
Query:  128 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFEN 565
            IAKDVTELIG TPLVYLNR+ DGCV R+AAKLE MEPCSSVKDRIGYSMI DAEEKGLI PG+SVLIEPTSGNTGIGLAFMAAAKGYRL++TMPASMS+ERR++L AFGAEL+LTDP  GMKGAVQKAEE+  KT NS++LQQFEN
Sbjct:    5 IAKDVTELIGNTPLVYLNRVTDGCVGRVAAKLESMEPCSSVKDRIGYSMITDAEEKGLITPGKSVLIEPTSGNTGIGLAFMAAAKGYRLVLTMPASMSMERRIILKAFGAELILTDPLLGMKGAVQKAEELAAKTNNSFILQQFEN 150          
BLAST of FC925486 vs. ExPASy Swiss-Prot
Match: CYSK2_BRAJU (Cysteine synthase OS=Brassica juncea PE=2 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 6.686e-65
Identity = 120/146 (82.19%), Postives = 135/146 (92.47%), Query Frame = 2
Query:  128 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFEN 565
            IA DVTELIG TPLVYLN + +GCV R+AAKLEMMEPCSSVKDRIG+SMI+DAE+KGLI+PGESVLIEPTSGNTG+GLAF AAAKGY+LIITMPASMS+ERR++LLAFG ELVLTDPA+GMKGA+ KAEEI  KTPN Y+LQQFEN
Sbjct:    7 IANDVTELIGNTPLVYLNSVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSIERRIILLAFGVELVLTDPAKGMKGAIAKAEEILAKTPNGYMLQQFEN 152          
BLAST of FC925486 vs. ExPASy Swiss-Prot
Match: CYSK_MAIZE (Cysteine synthase OS=Zea mays PE=1 SV=2)

HSP 1 Score: 244.202 bits (622), Expect = 3.318e-64
Identity = 122/146 (83.56%), Postives = 132/146 (90.41%), Query Frame = 2
Query:  128 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFEN 565
            IAKDVTELIG TPLVYLN++ DGCV R  AKLE MEPCSSVKDRIGYSMI DAEEKGLI PG SVLIEPTSGNTGIGLAFMAAAKGY+L +TMPASMS+ERR++L AFGAELVLTDP  GMKGAV+KAEEI+ KTPNSY+LQQFEN
Sbjct:    8 IAKDVTELIGNTPLVYLNKVTDGCVGRSRAKLESMEPCSSVKDRIGYSMITDAEEKGLITPGVSVLIEPTSGNTGIGLAFMAAAKGYKLTLTMPASMSMERRIILKAFGAELVLTDPLLGMKGAVKKAEEIQAKTPNSYILQQFEN 153          
BLAST of FC925486 vs. ExPASy Swiss-Prot
Match: CYSK2_ORYSJ (Cysteine synthase OS=Oryza sativa subsp. japonica GN=RCS3 PE=2 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 5.660e-64
Identity = 120/146 (82.19%), Postives = 134/146 (91.78%), Query Frame = 2
Query:  128 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMEPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFEN 565
            IA DVT LIG TPLVYLN++VDGC A+IAAKLE+MEPCSSVKDRIGYSMI DAEEKGLI PG+SVLIEPTSGNTGIGLAFMAAAKGY+LI+TMPASMS+ERR++L AFGAELVLTDP  GMKGA+QKA+E+  K PNSY+LQQFEN
Sbjct:    8 IASDVTALIGNTPLVYLNKVVDGCEAQIAAKLEIMEPCSSVKDRIGYSMITDAEEKGLITPGKSVLIEPTSGNTGIGLAFMAAAKGYKLILTMPASMSMERRIILKAFGAELVLTDPLLGMKGAIQKADELAAKMPNSYILQQFEN 153          
The following BLAST results are available for this feature:
BLAST of FC925486 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
CYSK_CITLA4.047e-7089.86Cysteine synthase OS=Citrullus lanatus PE=2 SV=1[more]
CYSK_SPIOL2.900e-6887.67Cysteine synthase OS=Spinacia oleracea PE=1 SV=1[more]
CYSK_SOLTU5.470e-6784.93Cysteine synthase OS=Solanum tuberosum PE=2 SV=1[more]
CYSK_WHEAT1.032e-6583.56Cysteine synthase OS=Triticum aestivum GN=CYS1 PE=... [more]
CYSK1_BRAJU1.032e-6582.43Cysteine synthase OS=Brassica juncea PE=2 SV=1[more]
CYSK1_ARATH2.298e-6582.43Cysteine synthase OS=Arabidopsis thaliana GN=OASA1... [more]
CYSK1_ORYSJ3.001e-6583.56Cysteine synthase OS=Oryza sativa subsp. japonica ... [more]
CYSK2_BRAJU6.686e-6582.19Cysteine synthase OS=Brassica juncea PE=2 SV=1[more]
CYSK_MAIZE3.318e-6483.56Cysteine synthase OS=Zea mays PE=1 SV=2[more]
CYSK2_ORYSJ5.660e-6482.19Cysteine synthase OS=Oryza sativa subsp. japonica ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YK11FM1 TF Citrus clementina cDNA clone KN0AAP8YK11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925486 ID=FC925486; Name=FC925486; organism=Citrus clementina; type=EST; length=567bp
TTTGTTTTTCAATTTTCTACTGTTTTCCAGCTGCCTTGACATTGTTTACG
ATTCTTCCCAGAGAAAGCTTTCACGTTCGCTTGTAACTTGAAAAAAAGAA
AAAAAAATGGTGGAGGAGAAGTCCGTGATTGCGAAAGATGTCACTGAATT
GATTGGTAAAACACCATTGGTGTATCTCAACCGCATTGTGGATGGTTGCG
TTGCTAGAATTGCTGCCAAGCTGGAGATGATGGAACCCTGCTCTAGCGTC
AAAGATAGAATTGGATACAGTATGATCGCTGATGCAGAGGAGAAGGGTCT
CATTAGACCAGGCGAGAGTGTCCTGATTGAGCCTACCAGCGGTAATACTG
GCATAGGGTTGGCATTCATGGCAGCTGCTAAGGGTTACAGACTTATAATT
ACCATGCCTGCTTCAATGAGTCTTGAAAGAAGAATGGTTCTCCTAGCTTT
TGGAGCTGAGCTTGTGCTCACTGATCCTGCCAGGGGCATGAAGGGAGCTG
TTCAGAAGGCAGAAGAGATAAGGGACAAGACACCGAATTCCTATGTCCTT
CAGCAGTTTGAAAACCC
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