FC925551

Overview
NameFC925551
Unique NameFC925551
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length764
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC925551_ssr75 microsatellite FC925551_ssr75:75..86. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig584 contig Ccv1_Contig584:31..793. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925551 vs. ExPASy Swiss-Prot
Match: KPRS1_ARATH (Ribose-phosphate pyrophosphokinase 1 OS=Arabidopsis thaliana GN=PRS1 PE=2 SV=2)

HSP 1 Score: 248.44 bits (633), Expect = 3.106e-65
Identity = 120/145 (82.76%), Postives = 134/145 (92.41%), Query Frame = 3
Query:  300 AAVRCDMAEALNFPNGKPNIPVLNERTLPKFLETARMEKTVNRTTNNRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVIPYFGYARADRK 734
            A V+CDM E+LN  NG P+IP++NERTLPKFLE+ARMEK+VNRT N R+KLFSGTANPAL+QEIA YMG++LGK+NIKRFADGEIYVQLQESVRGCDVYLVQPTC P NENLMELLIM+DACRRASAK +TAVIPYFGYARADRK
Sbjct:   46 ACVKCDMPESLNVGNGNPSIPIINERTLPKFLESARMEKSVNRT-NTRLKLFSGTANPALAQEIAWYMGLDLGKVNIKRFADGEIYVQLQESVRGCDVYLVQPTCTPTNENLMELLIMVDACRRASAKKVTAVIPYFGYARADRK 189          
BLAST of FC925551 vs. ExPASy Swiss-Prot
Match: KPRS2_SPIOL (Ribose-phosphate pyrophosphokinase 2, chloroplastic OS=Spinacia oleracea GN=PRS2 PE=2 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 6.273e-58
Identity = 106/144 (73.61%), Postives = 129/144 (89.58%), Query Frame = 3
Query:  303 AVRCDMAEALNFPNGKPNIPVLNERTLPKFLETARMEKTVNRTTNNRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVIPYFGYARADRK 734
            +V+C+  E L   NGKP++P+L+E++LPKFL + R+E +VNR+ N R+KLFSG ANPAL++E+A YMG+ELGK+ IKRFADGEIYVQL+ESVRGCDV+++QPT PPANENLMELLIMIDACRRASAKNITAVIPYFGYARADRK
Sbjct:   39 SVKCNTVEPLKLVNGKPSVPILDEQSLPKFLHSKRLESSVNRS-NTRLKLFSGLANPALAKEVAWYMGLELGKVKIKRFADGEIYVQLEESVRGCDVFIIQPTSPPANENLMELLIMIDACRRASAKNITAVIPYFGYARADRK 181          
BLAST of FC925551 vs. ExPASy Swiss-Prot
Match: KPRS2_ARATH (Ribose-phosphate pyrophosphokinase 2 OS=Arabidopsis thaliana GN=PRS2 PE=1 SV=2)

HSP 1 Score: 218.779 bits (556), Expect = 2.635e-56
Identity = 104/149 (69.80%), Postives = 129/149 (86.58%), Query Frame = 3
Query:  288 VCNAAAVRCDMAEALNFPNGKPNIPVLNERTLPKFLETARMEKTVNRTTNNRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVIPYFGYARADRK 734
            +C +   +C++ +ALN   G   +P++NE T+PKF +++R+EK+V+R  N ++KLFSGTANPALSQEIA YMG+ELGK++IKRFADGEIYVQL+ESVRGCDV+LVQPTC P NENLMELLIM+DACRRASAK +TAVIPYFGYARADRK
Sbjct:   42 ICVSGYAKCNLPKALN---GNARVPIINETTIPKFFDSSRLEKSVSRN-NTKLKLFSGTANPALSQEIAWYMGLELGKVSIKRFADGEIYVQLKESVRGCDVFLVQPTCTPTNENLMELLIMVDACRRASAKKVTAVIPYFGYARADRK 186          
BLAST of FC925551 vs. ExPASy Swiss-Prot
Match: KPRS1_SPIOL (Ribose-phosphate pyrophosphokinase 1 OS=Spinacia oleracea GN=PRS1 PE=2 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 9.700e-51
Identity = 94/123 (76.42%), Postives = 112/123 (91.06%), Query Frame = 3
Query:  366 LNERTLPKFLETARMEKTVNRTTNNRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVIPYFGYARADRK 734
            +++++ P F+ +   + ++NR  + R+++FSGTANPAL+QEIACYMG++LGKI IKRFADGEIYVQLQESVRGCDV+LVQPTCPPANENLMELLIMIDACRRASAKNITAVIPYFGYARADRK
Sbjct:    1 MDQQSFPSFMASTHFDSSINRN-DTRLRIFSGTANPALAQEIACYMGLQLGKIKIKRFADGEIYVQLQESVRGCDVFLVQPTCPPANENLMELLIMIDACRRASAKNITAVIPYFGYARADRK 122          
BLAST of FC925551 vs. ExPASy Swiss-Prot
Match: KPRS1_ORYSJ (Ribose-phosphate pyrophosphokinase 1 OS=Oryza sativa subsp. japonica GN=Os02g0127700 PE=2 SV=2)

HSP 1 Score: 197.208 bits (500), Expect = 8.211e-50
Identity = 101/143 (70.63%), Postives = 116/143 (81.12%), Query Frame = 3
Query:  306 VRCDMAEALNFPNGKPNIPVLNERTLPKFLETARMEKTVNRTTNNRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVIPYFGYARADRK 734
            VRC   + L   NG P    ++ R+L   + T  + +  N   + R+++FSGTANP+LSQEIA Y+G+ELGKINIKRFADGEIYVQLQESVRGCDV+LVQPTCPPANENLMELLIMIDACRRASAKNITAVIPYFGYARADRK
Sbjct:   35 VRCKKIDQLRAVNGIPPYAPVSNRSLLSPV-TLPIIRDANIKNDTRLRIFSGTANPSLSQEIASYLGLELGKINIKRFADGEIYVQLQESVRGCDVFLVQPTCPPANENLMELLIMIDACRRASAKNITAVIPYFGYARADRK 176          
BLAST of FC925551 vs. ExPASy Swiss-Prot
Match: KPRS5_ARATH (Ribose-phosphate pyrophosphokinase 5 OS=Arabidopsis thaliana GN=PRS5 PE=2 SV=2)

HSP 1 Score: 193.741 bits (491), Expect = 9.079e-49
Identity = 95/144 (65.97%), Postives = 115/144 (79.86%), Query Frame = 3
Query:  306 VRCDMAEALNFPNGKP-NIPVLNERTLPKFLETARMEKTVNRTTNNRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVIPYFGYARADRK 734
            ++C+ A+   F  G      +L   T+P      R+E ++ + T  R+++FSGTANP L+QEI+CY+G++LGKI IKRFADGEIYVQLQESVRGCDV+LVQPTCPPANENLMELL+MIDACRRASAK ITAVIPYFGYARADRK
Sbjct:   32 LKCNAADPYKFDGGNSAGFHLLTGDTVPASFSRTRLEDSIYQNTT-RLRIFSGTANPILAQEISCYLGLDLGKIKIKRFADGEIYVQLQESVRGCDVFLVQPTCPPANENLMELLVMIDACRRASAKTITAVIPYFGYARADRK 174          
BLAST of FC925551 vs. ExPASy Swiss-Prot
Match: KPRS2_ORYSJ (Ribose-phosphate pyrophosphokinase 2 OS=Oryza sativa subsp. japonica GN=Os06g0617800 PE=2 SV=2)

HSP 1 Score: 169.859 bits (429), Expect = 1.404e-41
Identity = 82/113 (72.57%), Postives = 96/113 (84.96%), Query Frame = 3
Query:  396 ETARMEKTVNRTTNNRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVIPYFGYARADRK 734
            + AR+        ++R+K+FSGTAN  L+QEIA Y+GV+LGK+ IKRFADGEIYVQLQESVRGCDV+LVQPTC P NENLMEL +MIDACRRASA++IT VIPYFGYARADRK
Sbjct:   74 QEARLAALRTDGRDSRLKIFSGTANRPLAQEIASYLGVDLGKVLIKRFADGEIYVQLQESVRGCDVFLVQPTCSPVNENLMELFVMIDACRRASARSITVVIPYFGYARADRK 186          
BLAST of FC925551 vs. ExPASy Swiss-Prot
Match: KPRS_PROMM (Ribose-phosphate pyrophosphokinase OS=Prochlorococcus marinus (strain MIT 9313) GN=prs PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 4.993e-39
Identity = 76/118 (64.41%), Postives = 95/118 (80.51%), Query Frame = 3
Query:  381 LPKFLETARMEKTVNRTTNNRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVIPYFGYARADRK 734
            +  FL  AR E+        R++LFSGT+NPAL++EIA Y+GV  G    KRFADGE+YVQ+QES+RGCDV+L+QPTC P N+NLMELLIM+DAC+RASA+ ITAV+PY+GYARADRK
Sbjct:    1 MTSFLTAARTEQESISYDMQRLRLFSGTSNPALAREIAAYLGVPDGPRICKRFADGELYVQIQESIRGCDVFLIQPTCAPVNDNLMELLIMVDACQRASARQITAVVPYYGYARADRK 118          
BLAST of FC925551 vs. ExPASy Swiss-Prot
Match: KPRS_SYNPX (Ribose-phosphate pyrophosphokinase OS=Synechococcus sp. (strain WH8102) GN=prs PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 8.517e-39
Identity = 75/118 (63.56%), Postives = 94/118 (79.66%), Query Frame = 3
Query:  381 LPKFLETARMEKTVNRTTNNRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVIPYFGYARADRK 734
            +  FL  AR E+        R++LFSGT+NP L++EIA Y+GV  G    KRFADGE+YVQ+QES+RGCDV+L+QPTC P N++LMELLIM+DACRRASA+ ITAV+PY+GYARADRK
Sbjct:    1 MTSFLTAARAEQEKLTPDTRRLRLFSGTSNPGLAREIAAYLGVPDGPRVCKRFADGELYVQIQESIRGCDVFLIQPTCAPVNDHLMELLIMVDACRRASARQITAVVPYYGYARADRK 118          
BLAST of FC925551 vs. ExPASy Swiss-Prot
Match: KPRS_SYNE7 (Ribose-phosphate pyrophosphokinase OS=Synechococcus elongatus (strain PCC 7942) GN=prs PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.237e-38
Identity = 72/100 (72.00%), Postives = 92/100 (92.00%), Query Frame = 3
Query:  435 NNRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVIPYFGYARADRK 734
            N+R++LFSG++N ALSQE++ Y+G++LG +  KRFADGE+YVQ+QES+RGCDVYL+QPTC P N++LMELLIMIDACRRASA+ ITAV+PY+GYARADRK
Sbjct:   19 NHRLRLFSGSSNSALSQEVSRYLGIDLGPMIRKRFADGELYVQIQESIRGCDVYLMQPTCWPVNDHLMELLIMIDACRRASARQITAVLPYYGYARADRK 118          
The following BLAST results are available for this feature:
BLAST of FC925551 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 186
Match NameE-valueIdentityDescription
KPRS1_ARATH3.106e-6582.76Ribose-phosphate pyrophosphokinase 1 OS=Arabidopsi... [more]
KPRS2_SPIOL6.273e-5873.61Ribose-phosphate pyrophosphokinase 2, chloroplasti... [more]
KPRS2_ARATH2.635e-5669.80Ribose-phosphate pyrophosphokinase 2 OS=Arabidopsi... [more]
KPRS1_SPIOL9.700e-5176.42Ribose-phosphate pyrophosphokinase 1 OS=Spinacia o... [more]
KPRS1_ORYSJ8.211e-5070.63Ribose-phosphate pyrophosphokinase 1 OS=Oryza sati... [more]
KPRS5_ARATH9.079e-4965.97Ribose-phosphate pyrophosphokinase 5 OS=Arabidopsi... [more]
KPRS2_ORYSJ1.404e-4172.57Ribose-phosphate pyrophosphokinase 2 OS=Oryza sati... [more]
KPRS_PROMM4.993e-3964.41Ribose-phosphate pyrophosphokinase OS=Prochlorococ... [more]
KPRS_SYNPX8.517e-3963.56Ribose-phosphate pyrophosphokinase OS=Synechococcu... [more]
KPRS_SYNE73.237e-3872.00Ribose-phosphate pyrophosphokinase OS=Synechococcu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YK03FM1 TF Citrus clementina cDNA clone KN0AAP3YK03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925551 ID=FC925551; Name=FC925551; organism=Citrus clementina; type=EST; length=764bp
GCAAAATAGCCATTGAAGAAGAAAAAGCAACCGAAGCTCTCTCTGCCTCC
TCACCGTCACCACAAAAACAAAAGGAAAGAAAGAAAGAGAGTGAGTGAGA
GAAAGAGAGATCAAAAGGAGAGAGAGCTGAAACAACACAACAGATAACAA
TGGCTTCGCTGACGATGCCGCGCCCTTCACAATCCACGTCAGCTTCTTGC
TCTTCGCCTATCCCCAGTCGCTGTTCTTTCGGTGACCAAAACCCAACTTT
TTCATTCAGTTTCAGGGACTCTCGCTCTCGGGTTCACGTCTGTAATGCCG
CCGCCGTTAGATGTGACATGGCTGAGGCATTGAATTTTCCAAATGGGAAG
CCTAATATTCCAGTTCTAAACGAACGGACGCTGCCCAAATTTTTGGAAAC
GGCGCGTATGGAGAAAACTGTCAACAGAACTACAAATAACAGGATCAAAT
TGTTCTCTGGCACCGCCAATCCTGCTCTTTCCCAGGAAATTGCTTGCTAC
ATGGGCGTGGAACTGGGAAAGATCAACATAAAGCGATTTGCTGATGGTGA
AATTTATGTTCAGCTGCAAGAGAGTGTTAGAGGATGTGATGTTTATTTGG
TGCAGCCCACCTGTCCTCCGGCAAATGAAAATCTCATGGAGCTTTTGATA
ATGATAGATGCGTGTCGGAGAGCGTCAGCCAAGAATATCACAGCTGTGAT
TCCTTACTTTGGATATGCTAGAGCTGACAGAAAAGACTCAAGGGCGAAAA
ATCATTGCTGCCAA
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