FC925553

Overview
NameFC925553
Unique NameFC925553
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length842
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC925553_ssr766 microsatellite FC925553_ssr766:766..777. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig705 contig Ccv1_Contig705:159..1000. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925553 vs. ExPASy Swiss-Prot
Match: GCSPA_FLAPR (Glycine dehydrogenase [decarboxylating] A, mitochondrial OS=Flaveria pringlei GN=GDCSPA PE=2 SV=1)

HSP 1 Score: 360.918 bits (925), Expect = 4.988e-99
Identity = 197/264 (74.62%), Postives = 214/264 (81.06%), Query Frame = 3
Query:   54 MERARRLASRAFLKRLVNESKQLSRNHRESKXXXXXXXTYTPSRYLSSLSCAPFVCSN-NSRSDLLQSRNMSHHNVNGYGIGSQTRGISVEALKPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASN 842
            MERARRLA++A L RLV+++K     H  S          +PSRY+SSLS  P+VCS  N RSD          N+NG+G  SQ R ISVEALKPSDTF RRHNSATPE+Q KM+E VG  NLDSLIDATVPKSIR+DSMK+SKFDEGLTESQMI HMQ LAS NK++KSFIGMGYYNT VP VILRNIMENP WYTQYTPYQAEIAQGRLESLLNFQTM+ DLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASN
Sbjct:    1 MERARRLANKAILGRLVSQTK-----HNPS---ISSPALCSPSRYVSSLS--PYVCSGTNVRSD---------RNLNGFG--SQVRTISVEALKPSDTFPRRHNSATPEEQTKMAEFVGFPNLDSLIDATVPKSIRLDSMKYSKFDEGLTESQMIAHMQDLASKNKIFKSFIGMGYYNTSVPTVILRNIMENPGWYTQYTPYQAEIAQGRLESLLNFQTMVTDLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASN 243          
BLAST of FC925553 vs. ExPASy Swiss-Prot
Match: GCSPB_FLAPR (Glycine dehydrogenase [decarboxylating] B, mitochondrial OS=Flaveria pringlei GN=GDCSPB PE=3 SV=1)

HSP 1 Score: 353.214 bits (905), Expect = 1.040e-96
Identity = 197/264 (74.62%), Postives = 211/264 (79.92%), Query Frame = 3
Query:   54 MERARRLASRAFLKRLVNESKQLSRNHRESKXXXXXXXTYTPSRYLSSLSCAPFVCSN-NSRSDLLQSRNMSHHNVNGYGIGSQTRGISVEALKPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASN 842
            MERARRLA    L RLV+++K     H  S          +PSRY+SSLS  P+VCS  N RSD          N+NG+G  SQ R ISVEALKPSDTF RRHNSATPE+Q KM+E VG  NLDSLIDATVPKSIR+DSMK+SKFDEGLTESQMI HMQ LAS NK++KSFIGMGYYNT VP VILRNIMENP WYTQYTPYQAEIAQGRLESLLNFQTMI DLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASN
Sbjct:    1 MERARRLA---ILGRLVSQTK-----HNPS---ISSPALCSPSRYVSSLS--PYVCSGTNVRSD---------RNLNGFG--SQVRTISVEALKPSDTFPRRHNSATPEEQTKMAEFVGFPNLDSLIDATVPKSIRLDSMKYSKFDEGLTESQMIAHMQDLASKNKIFKSFIGMGYYNTSVPTVILRNIMENPGWYTQYTPYQAEIAQGRLESLLNFQTMITDLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASN 240          
BLAST of FC925553 vs. ExPASy Swiss-Prot
Match: GCSP_FLATR (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Flaveria trinervia GN=GDCSPA PE=3 SV=1)

HSP 1 Score: 352.443 bits (903), Expect = 1.774e-96
Identity = 196/264 (74.24%), Postives = 211/264 (79.92%), Query Frame = 3
Query:   54 MERARRLASRAFLKRLVNESKQLSRNHRESKXXXXXXXTYTPSRYLSSLSCAPFVCSN-NSRSDLLQSRNMSHHNVNGYGIGSQTRGISVEALKPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASN 842
            MERARRLA    L RLV+++K     H  S          +PSRY+SSLS  P+VCS  N RSD          N+NG+G  SQ R ISVEALKPSDTF RRHNSATPE+Q KM+E VG  NLDSLIDATVPK+IR+DSMK+SKFDEGLTESQMI HMQ LAS NK++KSFIGMGYYNT VP VILRNIMENP WYTQYTPYQAEIAQGRLESLLNFQTMI DLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASN
Sbjct:    1 MERARRLA---MLGRLVSQTK-----HNPS---ISSSALCSPSRYVSSLS--PYVCSGTNVRSD---------RNLNGFG--SQVRTISVEALKPSDTFPRRHNSATPEEQTKMAEFVGFSNLDSLIDATVPKAIRLDSMKYSKFDEGLTESQMIAHMQDLASKNKIFKSFIGMGYYNTSVPTVILRNIMENPGWYTQYTPYQAEIAQGRLESLLNFQTMITDLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASN 240          
BLAST of FC925553 vs. ExPASy Swiss-Prot
Match: GCSP_FLAAN (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Flaveria anomala GN=GDCSP PE=3 SV=1)

HSP 1 Score: 352.058 bits (902), Expect = 2.317e-96
Identity = 196/264 (74.24%), Postives = 210/264 (79.55%), Query Frame = 3
Query:   54 MERARRLASRAFLKRLVNESKQLSRNHRESKXXXXXXXTYTPSRYLSSLSCAPFVCSN-NSRSDLLQSRNMSHHNVNGYGIGSQTRGISVEALKPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASN 842
            MERARRLA    L RLV+++K     H  S          +PSRY+SSLS  P+VC   N RSD          N+NG+G  SQ R ISVEALKPSDTF RRHNSATPE+Q KM+E VG  NLDSLIDATVPKSIR+DSMK+SKFDEGLTESQMI HMQ LAS NK++KSFIGMGYYNT VP VILRNIMENP WYTQYTPYQAEIAQGRLESLLNFQTMI DLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASN
Sbjct:    1 MERARRLA---MLGRLVSQTK-----HNPS---ISSPALCSPSRYVSSLS--PYVCGGTNVRSD---------RNLNGFG--SQVRTISVEALKPSDTFPRRHNSATPEEQTKMAEFVGFSNLDSLIDATVPKSIRLDSMKYSKFDEGLTESQMIAHMQDLASKNKIFKSFIGMGYYNTSVPTVILRNIMENPGWYTQYTPYQAEIAQGRLESLLNFQTMITDLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASN 240          
BLAST of FC925553 vs. ExPASy Swiss-Prot
Match: GCSP_PEA (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Pisum sativum GN=GDCSP PE=1 SV=1)

HSP 1 Score: 350.517 bits (898), Expect = 6.741e-96
Identity = 190/270 (70.37%), Postives = 215/270 (79.63%), Query Frame = 3
Query:   54 MERARRLASRAFLKRLVNESKQLSRNHRESKXXXXXXXTYTP-------SRYLSSLSCAPFVCSNNSRSDLLQSRNMSHHNVNGYGIGSQTRGISVEALKPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASN 842
            MERARRLA+RA LKRL++E+KQ    +R+++       T  P       SRY+SS+S +  +    S+ D   SR +      G G  SQ+R ISVEALKPSDTF RRHNSATP++Q KM+E VG D LDSL+DATVPKSIR+  MKF+KFD GLTE QMIEHM+ LAS NKV+KSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEI+QGRLESLLNFQTMI DLTGLPMSNASLLDEGTAAAEAM+MCNNIQKGKKKTFIIASN
Sbjct:    1 MERARRLANRATLKRLLSEAKQ----NRKTESTSTTTTTPLPFSLSGSSSRYVSSVSNS-ILRGRGSKPDNNVSRRVG--GFLGVGYPSQSRSISVEALKPSDTFPRRHNSATPDEQTKMAESVGFDTLDSLVDATVPKSIRLKEMKFNKFDGGLTEGQMIEHMKDLASKNKVFKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEISQGRLESLLNFQTMITDLTGLPMSNASLLDEGTAAAEAMSMCNNIQKGKKKTFIIASN 263          
BLAST of FC925553 vs. ExPASy Swiss-Prot
Match: GCSP_SOLTU (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Solanum tuberosum GN=GDCSP PE=2 SV=1)

HSP 1 Score: 346.665 bits (888), Expect = 9.734e-95
Identity = 184/263 (69.96%), Postives = 205/263 (77.95%), Query Frame = 3
Query:   54 MERARRLASRAFLKRLVNESKQLSRNHRESKXXXXXXXTYTPSRYLSSLSCAPFVCSNNSRSDLLQSRNMSHHNVNGYGIGSQTRGISVEALKPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASN 842
            MERAR+LA+RA LKRLV++SKQ   N   S         Y PSRY+SSLS   F   NN++S   Q                Q R ISVEALKPSDTF RRHNSATPE+Q KM+E  G  +LD+LIDATVP+SIR +SMK  KFD GLTESQMIEHMQ LAS NKV+KS+IGMGYYNT+VPPVILRN++ENPAWYTQYTPYQAEI+QGRLESLLN+QTMI DLTGLPMSNASLLDEGTAAAEAMAMCNNI KGKKKTF+IASN
Sbjct:    1 MERARKLANRAILKRLVSQSKQSRSNEIPSSSL------YRPSRYVSSLSPYTFQARNNAKSFNTQ----------------QARSISVEALKPSDTFPRRHNSATPEEQTKMAEFCGFQSLDALIDATVPQSIRSESMKLPKFDSGLTESQMIEHMQNLASKNKVFKSYIGMGYYNTYVPPVILRNLLENPAWYTQYTPYQAEISQGRLESLLNYQTMITDLTGLPMSNASLLDEGTAAAEAMAMCNNILKGKKKTFLIASN 241          
BLAST of FC925553 vs. ExPASy Swiss-Prot
Match: GCSP1_ARATH (Glycine dehydrogenase [decarboxylating] 1, mitochondrial OS=Arabidopsis thaliana GN=GDCSP PE=1 SV=1)

HSP 1 Score: 346.28 bits (887), Expect = 1.271e-94
Identity = 186/264 (70.45%), Postives = 207/264 (78.41%), Query Frame = 3
Query:   54 MERARRLASRAFLKRLVNESKQLSRNHRESKXXXXXXXTYTPSRYLSSLSCAPFVCSNNSRSDLLQSRNMSHHNVNGYGIGSQTRGISVEALKPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSK-FDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASN 842
            MERARRLA R  +KRLVNE+K+    HR  +       T TPSRY+SS+S       + S S    S    H          QTR ISV+ALKPSDTF RRHNSATP++QA+M+   G DNL++LID+TVPKSIR+DSMKFS  FDEGLTESQMIEHM  LAS NKV+KSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEI+QGRLESLLN+QT+I DLTGLPMSNASLLDEGTAAAEAMAMCNNI KGKKKTF+IASN
Sbjct:    1 MERARRLAYRGIVKRLVNETKR----HRNGESSLLPTTTVTPSRYVSSVSSFLHRRRDVSGSAFTTSGRNQH----------QTRSISVDALKPSDTFPRRHNSATPDEQAQMANYCGFDNLNTLIDSTVPKSIRLDSMKFSGIFDEGLTESQMIEHMSDLASKNKVFKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEISQGRLESLLNYQTVITDLTGLPMSNASLLDEGTAAAEAMAMCNNILKGKKKTFVIASN 250          
BLAST of FC925553 vs. ExPASy Swiss-Prot
Match: GCSP2_ARATH (Glycine dehydrogenase [decarboxylating] 2, mitochondrial OS=Arabidopsis thaliana GN=At4g33010 PE=1 SV=2)

HSP 1 Score: 343.584 bits (880), Expect = 8.240e-94
Identity = 182/263 (69.20%), Postives = 211/263 (80.23%), Query Frame = 3
Query:   54 MERARRLASRAFLKRLVNESKQLSRNHRESKXXXXXXXTYTPSRYLSSLSCAPFVCSNNSRSDLLQSRNMSHHNVNGYGIGSQTRGISVEALKPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASN 842
            MERARRLA R  +KRLVN++K+    HR ++        + P+RY+SSLS  PF+ +          R+++H     +G   QTR ISV+A+KPSDTF RRHNSATP++Q  M++  G D++DSLIDATVPKSIR+DSMKFSKFD GLTESQMI+HM  LAS NKV+KSFIGMGYYNTHVP VILRNIMENPAWYTQYTPYQAEI+QGRLESLLNFQT+I DLTGLPMSNASLLDEGTAAAEAMAMCNNI KGKKKTF+IASN
Sbjct:    1 MERARRLAYRGIVKRLVNDTKR----HRNAETPHLVP--HAPARYVSSLS--PFIST---------PRSVNH--TAAFGRHQQTRSISVDAVKPSDTFPRRHNSATPDEQTHMAKFCGFDHIDSLIDATVPKSIRLDSMKFSKFDAGLTESQMIQHMVDLASKNKVFKSFIGMGYYNTHVPTVILRNIMENPAWYTQYTPYQAEISQGRLESLLNFQTVITDLTGLPMSNASLLDEGTAAAEAMAMCNNILKGKKKTFVIASN 244          
BLAST of FC925553 vs. ExPASy Swiss-Prot
Match: GCSP_JANSC (Glycine dehydrogenase [decarboxylating] OS=Jannaschia sp. (strain CCS1) GN=gcvP PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 5.234e-48
Identity = 95/168 (56.55%), Postives = 120/168 (71.43%), Query Frame = 3
Query:  333 PSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFD-EGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFII 833
            P+D   RRH   +P + A+M E VG D+LD+LID TVP SIR    +    D   ++E+++++HM+ +A  NK   S IG GY+ TH PP I RN++ENPAWYT YTPYQ EIAQGRLE+LLNFQTM+ADLTGLP++NASLLDE TAAAEAM M     K K +TF +
Sbjct:   10 PTDFANRRHIGPSPAEMAEMLEFVGADSLDALIDDTVPASIR----QAGALDWAAMSEAELLDHMRAIADKNKPMVSMIGQGYFGTHTPPAIQRNVLENPAWYTAYTPYQPEIAQGRLEALLNFQTMVADLTGLPVANASLLDEATAAAEAMVMAQRASKSKARTFFV 173          
BLAST of FC925553 vs. ExPASy Swiss-Prot
Match: GCSP_VIBHB (Glycine dehydrogenase [decarboxylating] OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=gcvP PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 6.398e-46
Identity = 90/175 (51.43%), Postives = 116/175 (66.29%), Query Frame = 3
Query:  318 VEALKPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASN 842
            +++L   + F  RHN     DQ KM E +   +LDSLID TVP  IR++        E  +E+ M+  M+K A  N++ ++FIG GYYNT  P VILRN+MENP WYT YTPYQ EI+QGRLESLLN+Q M+ DLTG+ ++NASLLDE TAAAEAM +C    K K   F +A +
Sbjct:    5 LQSLSTQNEFVARHNGPNKSDQQKMLEAINAVSLDSLIDETVPAQIRLEQPM--NLAEAKSEADMLAAMRKFADQNQIKRTFIGQGYYNTFTPNVILRNVMENPGWYTAYTPYQPEISQGRLESLLNYQQMVMDLTGMEIANASLLDEATAAAEAMTLCKRAGKSKSNVFFVADD 177          
The following BLAST results are available for this feature:
BLAST of FC925553 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 420
Match NameE-valueIdentityDescription
GCSPA_FLAPR4.988e-9974.62Glycine dehydrogenase [decarboxylating] A, mitocho... [more]
GCSPB_FLAPR1.040e-9674.62Glycine dehydrogenase [decarboxylating] B, mitocho... [more]
GCSP_FLATR1.774e-9674.24Glycine dehydrogenase [decarboxylating], mitochond... [more]
GCSP_FLAAN2.317e-9674.24Glycine dehydrogenase [decarboxylating], mitochond... [more]
GCSP_PEA6.741e-9670.37Glycine dehydrogenase [decarboxylating], mitochond... [more]
GCSP_SOLTU9.734e-9569.96Glycine dehydrogenase [decarboxylating], mitochond... [more]
GCSP1_ARATH1.271e-9470.45Glycine dehydrogenase [decarboxylating] 1, mitocho... [more]
GCSP2_ARATH8.240e-9469.20Glycine dehydrogenase [decarboxylating] 2, mitocho... [more]
GCSP_JANSC5.234e-4856.55Glycine dehydrogenase [decarboxylating] OS=Jannasc... [more]
GCSP_VIBHB6.398e-4651.43Glycine dehydrogenase [decarboxylating] OS=Vibrio ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YL15FM1 TF Citrus clementina cDNA clone KN0AAP8YL15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925553 ID=FC925553; Name=FC925553; organism=Citrus clementina; type=EST; length=842bp
GTTTGCAAGAGGCAAGACTCAAGAGCCCGTTTTAGCTCTATCTCACTTCA
TTCATGGAGCGTGCAAGGCGGCTGGCCAGCCGGGCATTTCTCAAACGCCT
GGTTAATGAGTCCAAGCAGCTGTCCCGCAATCACCGTGAATCAAAATCAT
CAGCTGCCGCTGCTGCTACGTACACACCTTCAAGGTATCTCTCTTCATTG
TCATGTGCACCATTTGTTTGCTCCAACAATTCAAGATCAGATTTGTTGCA
ATCTAGGAACATGTCTCATCATAATGTTAATGGTTATGGTATCGGGTCAC
AGACTCGAGGCATTTCTGTTGAGGCATTAAAACCAAGTGATACTTTTGCT
CGTCGCCATAACTCTGCAACCCCAGAGGATCAAGCCAAAATGTCTGAGTT
AGTTGGTCTTGATAATCTCGATTCACTTATTGATGCTACTGTGCCTAAAT
CTATCCGTATTGATTCAATGAAATTCTCTAAGTTTGATGAAGGGTTAACC
GAGAGCCAAATGATTGAACATATGCAGAAACTAGCATCAATGAATAAGGT
TTATAAGTCATTTATTGGCATGGGATACTATAACACTCATGTTCCCCCTG
TGATTTTGAGGAACATTATGGAGAATCCAGCTTGGTACACTCAGTACACT
CCATACCAGGCTGAGATTGCTCAAGGGAGACTTGAGTCTTTGCTTAATTT
CCAGACCATGATTGCAGATCTTACTGGATTGCCTATGTCAAACGCCTCAT
TGCTTGATGAGGGAACTGCTGCTGCTGAGGCAATGGCTATGTGCAATAAC
ATACAGAAAGGAAAGAAGAAGACTTTTATTATTGCTAGCAAC
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