FC925565

Overview
NameFC925565
Unique NameFC925565
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length630
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1427 contig Ccv1_Contig1427:1..630. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925565 vs. ExPASy Swiss-Prot
Match: C72A1_CATRO (Secologanin synthase OS=Catharanthus roseus GN=CYP72A1 PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.865e-48
Identity = 91/213 (42.72%), Postives = 137/213 (64.32%), Query Frame = 1
Query:    4 ILAFACAW-WMLLNWVWLKPKKLEKFLRKQGFSGNSYKVFYGDMKELAQTTKEAKSRPISLSDDIARRILPFHYHIITNFGKNSFIWMGPRPNLNITDPKMIREIFLKHDIFKK---LRSPLAKLLITGMVGYDGEQWFKVRKIATPAFHHDKLKNMLPTIHKSCNDMLRKWEMSFSKDESCELDVWPHIQTLTADVISRTAFGSNFEKGRKI 630
            I A   AW W +L+W W  PK++EK LR+QGF GN Y+   GD+KE  +  +EA S+P+  ++DI  R++P   H I  +G+NSF WMG  P +++ +P++I+E+      ++K   + +PL K L+TG+  ++G +W K R+I +PAF  +KLK+MLP      +DML KWE    K  S E+D++P    LT+DVIS+ AFGS +E+G KI
Sbjct:   16 IFALVMAWAWRVLDWAWFTPKRIEKRLRQQGFRGNPYRFLVGDVKESGKMHQEALSKPMEFNNDIVPRLMPHINHTINTYGRNSFTWMGRIPRIHVMEPELIKEVLTHSSKYQKNFDVHNPLVKFLLTGVGSFEGAKWSKHRRIISPAFTLEKLKSMLPAFAICYHDMLTKWEKIAEKQGSHEVDIFPTFDVLTSDVISKVAFGSTYEEGGKI 228          
BLAST of FC925565 vs. ExPASy Swiss-Prot
Match: CP4X1_RAT (Cytochrome P450 4X1 OS=Rattus norvegicus GN=Cyp4x1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.304e-11
Identity = 43/118 (36.44%), Postives = 64/118 (54.24%), Query Frame = 1
Query:  259 WMGP-RPNLNITDPKMIREIFLKHDIFKK--LRSPLAKLLITGMVGYDGEQWFKVRKIATPAFHHDKLKNMLPTIHKSCNDMLRKWEMSFSKDESCELDVWPHIQTLTADVISRTAFG 603
            W+GP +    I DP   + IFL     K   L   +   L  G++  DG +WF+ R + TPAFH D LK  +  +  S N ML KWE +++  E+  ++V+ HI  +T D+I + AFG
Sbjct:   83 WVGPFQAFFYIYDPDYAK-IFLSRTDPKTQYLHQLMTPFLGRGLLNLDGPRWFQHRCLLTPAFHQDILKPCVDMMAHSVNMMLDKWEKTWTTQET-TIEVFEHINLMTLDIIMKCAFG 198          
The following BLAST results are available for this feature:
BLAST of FC925565 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
C72A1_CATRO1.865e-4842.72Secologanin synthase OS=Catharanthus roseus GN=CYP... [more]
CP4X1_RAT5.304e-1136.44Cytochrome P450 4X1 OS=Rattus norvegicus GN=Cyp4x1... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP11YG19FM1 TF Citrus clementina cDNA clone KN0AAP11YG19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925565 ID=FC925565; Name=FC925565; organism=Citrus clementina; type=EST; length=630bp
GCTATTCTAGCCTTTGCATGTGCCTGGTGGATGCTACTGAATTGGGTATG
GCTAAAACCAAAGAAGCTAGAAAAGTTCCTCAGAAAGCAAGGATTCTCCG
GAAACTCCTACAAAGTATTTTACGGAGACATGAAAGAGCTTGCCCAGACC
ACTAAAGAAGCTAAAAGCAGACCCATCAGCCTCTCCGACGATATCGCCCG
GCGAATTCTGCCTTTCCACTATCATATCATCACCAATTTTGGTAAGAATT
CCTTCATATGGATGGGTCCAAGACCAAACTTAAACATCACAGACCCTAAG
ATGATAAGGGAAATCTTTTTGAAGCATGATATCTTTAAAAAGCTGAGAAG
CCCACTTGCGAAGTTGCTGATCACTGGGATGGTAGGCTATGATGGTGAAC
AGTGGTTTAAAGTTAGAAAAATCGCCACTCCAGCTTTCCATCATGATAAG
TTGAAGAATATGTTACCTACAATTCATAAGAGCTGTAACGACATGCTAAG
GAAATGGGAGATGTCGTTTTCAAAGGATGAGTCCTGTGAGTTAGATGTGT
GGCCTCATATTCAAACTTTGACAGCGGATGTGATTTCTCGAACAGCATTC
GGCAGTAACTTTGAAAAAGGAAGAAAAATA
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