FC925573 | Citrus Genome Database

Overview


Name	FC925573
Unique Name	FC925573
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	609

Libraries


Library Name	Type
TF	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Ccv1_Contig2008	contig	Ccv1_Contig2008:1..609.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of FC925573 vs. ExPASy Swiss-Prot
Match: CLPX_FRATT (ATP-dependent Clp protease ATP-binding subunit clpX OS=Francisella tularensis subsp. tularensis GN=clpX PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.035e-32
Identity = 70/118 (59.32%), Postives = 91/118 (77.12%), Query Frame = 1

Query:  211 DCRSKIILVSQVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISER*YQFR-GYNFNVV 561
            D  + I+ + Q +D++VA AQ+GI+YIDE+DKI +K+ES +I+RDVSGEGVQQALLK++EGTV +VP KG RKHP  D IQ+DT DILFICGGAF  IEK I  R  +   G+N +V+
Sbjct:  150 DVENIIVRLLQNADFDVAKAQKGIIYIDEIDKIARKSESTSITRDVSGEGVQQALLKLIEGTVSSVPPKGGRKHPNQDMIQVDTSDILFICGGAFAGIEKVIKHRMDKVSIGFNSDVI 267

[Close]

BLAST of FC925573 vs. ExPASy Swiss-Prot
Match: CLPX_SYNP2 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=clpX PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.012e-32
Identity = 67/105 (63.81%), Postives = 86/105 (81.90%), Query Frame = 1

Query:  211 DCRSKIILVSQVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISER 525
            D  + ++ + QV+D +VA AQ+GI+YIDE+DKI +K+E+ +I+RDVSGEGVQQALLKMLEGTV NVP +G RKHP  D IQIDT++ILFICGGAFV ++K I  R
Sbjct:  176 DVENILLRLLQVADLDVAEAQRGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKHPYQDCIQIDTRNILFICGGAFVGLDKVIERR 280

[Close]

BLAST of FC925573 vs. ExPASy Swiss-Prot
Match: CLPX_SYNY3 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Synechocystis sp. (strain PCC 6803) GN=clpX PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.138e-32
Identity = 67/105 (63.81%), Postives = 85/105 (80.95%), Query Frame = 1

Query:  211 DCRSKIILVSQVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISER 525
            D  + ++ + QV+D +V  AQ+GI+YIDE+DKI +K+E+ +I+RDVSGEGVQQALLKMLEGTV NVP +G RKHP  D IQIDT +ILFICGGAFV +EK I +R
Sbjct:  179 DVENILLRLLQVADLDVEEAQRGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKHPYQDCIQIDTSNILFICGGAFVGLEKVIEQR 283

[Close]

BLAST of FC925573 vs. ExPASy Swiss-Prot
Match: CLPX_SYNJB (ATP-dependent Clp protease ATP-binding subunit clpX OS=Synechococcus sp. GN=clpX PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 6.710e-32
Identity = 66/105 (62.86%), Postives = 85/105 (80.95%), Query Frame = 1

Query:  211 DCRSKIILVSQVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISER 525
            D  + ++ + QV+D +V  AQ+GI+YIDE+DKI +K+E+ +I+RDVSGEGVQQALLKMLEGT+ NVP +G RKHP  D IQIDT +ILFICGGAFV +EK I +R
Sbjct:  180 DVENILLRLLQVADMDVEEAQRGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTIANVPPQGGRKHPYQDCIQIDTSNILFICGGAFVGLEKVIEQR 284

[Close]

BLAST of FC925573 vs. ExPASy Swiss-Prot
Match: CLPX_SYNJA (ATP-dependent Clp protease ATP-binding subunit clpX OS=Synechococcus sp. (strain JA-3-3Ab) GN=clpX PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 6.710e-32
Identity = 66/105 (62.86%), Postives = 85/105 (80.95%), Query Frame = 1

Query:  211 DCRSKIILVSQVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISER 525
            D  + ++ + QV+D +V  AQ+GI+YIDE+DKI +K+E+ +I+RDVSGEGVQQALLKMLEGT+ NVP +G RKHP  D IQIDT +ILFICGGAFV +EK I +R
Sbjct:  180 DVENILLRLLQVADMDVEEAQRGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTIANVPPQGGRKHPYQDCIQIDTSNILFICGGAFVGLEKVIEQR 284

[Close]

BLAST of FC925573 vs. ExPASy Swiss-Prot
Match: CLPX_ANASP (ATP-dependent Clp protease ATP-binding subunit clpX OS=Anabaena sp. (strain PCC 7120) GN=clpX PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 6.710e-32
Identity = 66/105 (62.86%), Postives = 85/105 (80.95%), Query Frame = 1

Query:  211 DCRSKIILVSQVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISER 525
            D  + ++ + QV+D +V  AQ+GI+YIDE+DKI +K+E+ +I+RDVSGEGVQQALLKMLEGTV NVP +G RKHP  D IQIDT +ILFICGGAFV +EK + +R
Sbjct:  179 DVENILLRLLQVADLDVEEAQRGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKHPYQDCIQIDTSNILFICGGAFVGLEKVVDQR 283

[Close]

BLAST of FC925573 vs. ExPASy Swiss-Prot
Match: CLPX_MICAN (ATP-dependent Clp protease ATP-binding subunit clpX OS=Microcystis aeruginosa (strain NIES-843) GN=clpX PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 8.764e-32
Identity = 65/105 (61.90%), Postives = 85/105 (80.95%), Query Frame = 1

Query:  211 DCRSKIILVSQVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISER 525
            D  + ++ + QV+D +V  AQ+GI+YIDE+DKI +K+E+ +I+RDVSGEGVQQALLKMLEGT+ NVP +G RKHP  D IQIDT +ILFICGGAFV ++K I +R
Sbjct:  177 DVENILLRLLQVADLDVEEAQRGIIYIDEIDKIARKSENTSITRDVSGEGVQQALLKMLEGTIANVPPQGGRKHPYQDCIQIDTSNILFICGGAFVGLDKVIDQR 281

[Close]

BLAST of FC925573 vs. ExPASy Swiss-Prot
Match: CLPX_ANAVT (ATP-dependent Clp protease ATP-binding subunit clpX OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=clpX PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 8.764e-32
Identity = 65/105 (61.90%), Postives = 85/105 (80.95%), Query Frame = 1

Query:  211 DCRSKIILVSQVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISER 525
            D  + ++ + QV+D +V  AQ+GI+YIDE+DKI +K+E+ +I+RDVSGEGVQQALLKMLEGT+ NVP +G RKHP  D IQIDT +ILFICGGAFV +EK + +R
Sbjct:  180 DVENILLRLLQVADLDVEEAQRGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTIANVPPQGGRKHPYQDCIQIDTSNILFICGGAFVGLEKVVDQR 284

[Close]

BLAST of FC925573 vs. ExPASy Swiss-Prot
Match: CLPX_CYAA5 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Cyanothece sp. (strain ATCC 51142) GN=clpX PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.145e-31
Identity = 66/105 (62.86%), Postives = 85/105 (80.95%), Query Frame = 1

Query:  211 DCRSKIILVSQVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISER 525
            D  + ++ + QV+D +V  AQ+GI+YIDE+DKI +K+E+ +I+RDVSGEGVQQALLKMLEGTV NVP +G RKHP  D IQIDT +ILFICGGAFV +E+ I +R
Sbjct:  169 DVENILLRLLQVADLDVEEAQRGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKHPYQDCIQIDTSNILFICGGAFVGLERVIEQR 273

[Close]

BLAST of FC925573 vs. ExPASy Swiss-Prot
Match: CLPX_TRIEI (ATP-dependent Clp protease ATP-binding subunit clpX OS=Trichodesmium erythraeum (strain IMS101) GN=clpX PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.495e-31
Identity = 66/105 (62.86%), Postives = 84/105 (80.00%), Query Frame = 1

Query:  211 DCRSKIILVSQVSDYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDIEKTISER 525
            D  + ++ + QV+D  V  AQ+GI+YIDE+DKI +K+E+ +I+RDVSGEGVQQALLKMLEGTV NVP +G RKHP  D IQIDT +ILFICGGAFV +EK + +R
Sbjct:  181 DVENILLRLLQVADLEVDEAQRGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKMLEGTVANVPPQGGRKHPYQDCIQIDTSNILFICGGAFVGLEKIVDQR 285

The following BLAST results are available for this feature:

BLAST of FC925573 vs. ExPASy Swiss-Prot

BLAST of FC925573 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
CLPX_FRATT	1.035e-32	59.32	ATP-dependent Clp protease ATP-binding subunit clp...	[more]
CLPX_SYNP2	3.012e-32	63.81	ATP-dependent Clp protease ATP-binding subunit clp...	[more]
CLPX_SYNY3	5.138e-32	63.81	ATP-dependent Clp protease ATP-binding subunit clp...	[more]
CLPX_SYNJB	6.710e-32	62.86	ATP-dependent Clp protease ATP-binding subunit clp...	[more]
CLPX_SYNJA	6.710e-32	62.86	ATP-dependent Clp protease ATP-binding subunit clp...	[more]
CLPX_ANASP	6.710e-32	62.86	ATP-dependent Clp protease ATP-binding subunit clp...	[more]
CLPX_MICAN	8.764e-32	61.90	ATP-dependent Clp protease ATP-binding subunit clp...	[more]
CLPX_ANAVT	8.764e-32	61.90	ATP-dependent Clp protease ATP-binding subunit clp...	[more]
CLPX_CYAA5	1.145e-31	62.86	ATP-dependent Clp protease ATP-binding subunit clp...	[more]
CLPX_TRIEI	1.495e-31	62.86	ATP-dependent Clp protease ATP-binding subunit clp...	[more]

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Properties


Property Name	Value
Genbank description	KN0AAP3YK13FM1 TF Citrus clementina cDNA clone KN0AAP3YK13, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC925573 ID=FC925573; Name=FC925573; organism=Citrus clementina; type=EST; length=609bp
CTTATATGTTCATTTTTTGTCCATTTCTCGTAGGTGTGTAGTAGGAAGGT
GAACCTGGTACTAGGTAGGTTTTGTGTGGTGTTTTTGGGGTAGAATATGG
AAGGTGCTTTTAGTTAAGGCTGCATACTTCTTATGTCCTTGTAAGATGGG
CAGAAAGTGTTATGTCACTTGGGAAATTGTTGGAATTTATGACATTTTAT
GCTTATATTGGATTGCAGATCTAAAATCATTCTCGTTTCACAGGTTTCTG
ACTATAATGTTGCAGCTGCTCAGCAGGGCATTGTGTATATTGATGAAGTT
GATAAGATCACCAAAAAGGCGGAGAGCCTTAATATTAGTCGAGATGTGTC
TGGAGAGGGTGTTCAACAAGCTCTGCTGAAAATGCTGGAAGGAACTGTTG
TCAATGTTCCTGAGAAGGGAGCTCGAAAGCATCCTAGAGGTGACAACATT
CAGATTGACACAAAGGATATACTCTTTATCTGTGGGGGTGCCTTTGTTGA
CATAGAAAAAACAATCTCGGAAAGGTAATACCAGTTTAGAGGTTATAATT
TCAATGTCGTTGCATTGGACATGATGTGGATAGTTTTTCCTTGGAAATTG
AGTGTGCTT