FC925607

Overview
NameFC925607
Unique NameFC925607
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length634
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925607 vs. ExPASy Swiss-Prot
Match: EF1A_TOBAC (Elongation factor 1-alpha OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 288.115 bits (736), Expect = 2.522e-77
Identity = 141/150 (94.00%), Postives = 148/150 (98.67%), Query Frame = 1
Query:    1 QEALLGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSGA 450
            QEAL GDNVGFNVKNV+VKDLKRG+VASNSKDDPAKGA++FTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKE+EKEPKFLKNGDAG VKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIK+VDKKDP+GA
Sbjct:  288 QEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAKGAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNVDKKDPTGA 437          
BLAST of FC925607 vs. ExPASy Swiss-Prot
Match: EF1A_SOLLC (Elongation factor 1-alpha OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 287.73 bits (735), Expect = 3.294e-77
Identity = 140/150 (93.33%), Postives = 148/150 (98.67%), Query Frame = 1
Query:    1 QEALLGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSGA 450
            QEAL GDNVGFNVKNV+VKDLKRGYVASNSKDDPAKGA++FT+QVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAG VKMIPTKPMVVETF+EYPPLGRFAVRDMRQTVAVGV+K+VDKKDP+GA
Sbjct:  288 QEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKGAASFTAQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFAEYPPLGRFAVRDMRQTVAVGVVKNVDKKDPTGA 437          
BLAST of FC925607 vs. ExPASy Swiss-Prot
Match: EF1A_ARATH (Elongation factor 1-alpha OS=Arabidopsis thaliana GN=A1 PE=1 SV=1)

HSP 1 Score: 287.73 bits (735), Expect = 3.294e-77
Identity = 141/149 (94.63%), Postives = 146/149 (97.99%), Query Frame = 1
Query:    4 EALLGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSGA 450
            EAL GDNVGFNVKNV+VKDLKRGYVASNSKDDPAKGA+NFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKF+EILTKIDRRSGKE+EKEPKFLKNGDAG VKM PTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDP+GA
Sbjct:  289 EALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKGAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPTGA 437          
BLAST of FC925607 vs. ExPASy Swiss-Prot
Match: EF1A_MANES (Elongation factor 1-alpha OS=Manihot esculenta GN=EF1 PE=3 SV=1)

HSP 1 Score: 286.96 bits (733), Expect = 5.619e-77
Identity = 143/150 (95.33%), Postives = 146/150 (97.33%), Query Frame = 1
Query:    1 QEALLGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSGA 450
            QEAL GDNVGFNVKNV+VKDLKRG VASNSKDDPAK A+NFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFS YPPLGRFAVRDMRQTVAVGVIKSV+KKDPSGA
Sbjct:  288 QEALPGDNVGFNVKNVAVKDLKRGIVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSAYPPLGRFAVRDMRQTVAVGVIKSVEKKDPSGA 437          
BLAST of FC925607 vs. ExPASy Swiss-Prot
Match: EF1A_ORYSJ (Elongation factor 1-alpha OS=Oryza sativa subsp. japonica GN=REFA1 PE=2 SV=2)

HSP 1 Score: 283.878 bits (725), Expect = 4.757e-76
Identity = 139/150 (92.67%), Postives = 147/150 (98.00%), Query Frame = 1
Query:    1 QEALLGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSGA 450
            QEAL GDNVGFNVKNV+VKDLKRGYVASNSKDDPAK A++FTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAE++TKIDRRSGKELEKEPKFLKNGDAG VKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIK+V+KKDP+GA
Sbjct:  288 QEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNVEKKDPTGA 437          
BLAST of FC925607 vs. ExPASy Swiss-Prot
Match: EF1A2_DAUCA (Elongation factor 1-alpha OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 283.878 bits (725), Expect = 4.757e-76
Identity = 140/150 (93.33%), Postives = 145/150 (96.67%), Query Frame = 1
Query:    1 QEALLGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSGA 450
            QEAL GDNVGFNVKNV+VKDLKRGYVASNSKDDPAK A+NFT+QVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEI TKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETF  YPPLGRFAVRDMRQTVAVGVIKSV+KKDP+GA
Sbjct:  288 QEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAANFTAQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEIQTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFMSYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTGA 437          
BLAST of FC925607 vs. ExPASy Swiss-Prot
Match: EF1A_VICFA (Elongation factor 1-alpha OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 281.952 bits (720), Expect = 1.808e-75
Identity = 137/149 (91.95%), Postives = 146/149 (97.99%), Query Frame = 1
Query:    4 EALLGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSGA 450
            EAL GDNVGFNVKNV+VKDLKRG+VASNSKDDPAK A+NFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAE++TKIDRRSGKE+EKEPKFLKNGDAG VKMIPTKPMVVETF+EYPPLGRFAVRDMRQTVAVGVIKSV+KKDP+GA
Sbjct:  289 EALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELITKIDRRSGKEIEKEPKFLKNGDAGMVKMIPTKPMVVETFAEYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTGA 437          
BLAST of FC925607 vs. ExPASy Swiss-Prot
Match: EF1A1_DAUCA (Elongation factor 1-alpha OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 281.952 bits (720), Expect = 1.808e-75
Identity = 138/149 (92.62%), Postives = 146/149 (97.99%), Query Frame = 1
Query:    4 EALLGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSGA 450
            EAL GDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGA++FTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAE+LTKIDRRSGKELEKEPKFLKNGDAG VKM+PTKPMVVETF+EYPPLGRFAVR MRQTVAVGVIK+V+KKDP+GA
Sbjct:  289 EALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELLTKIDRRSGKELEKEPKFLKNGDAGMVKMLPTKPMVVETFAEYPPLGRFAVRVMRQTVAVGVIKAVEKKDPTGA 437          
BLAST of FC925607 vs. ExPASy Swiss-Prot
Match: EF1A_SOYBN (Elongation factor 1-alpha OS=Glycine max GN=TEFS1 PE=3 SV=2)

HSP 1 Score: 281.182 bits (718), Expect = 3.083e-75
Identity = 137/149 (91.95%), Postives = 146/149 (97.99%), Query Frame = 1
Query:    4 EALLGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSGA 450
            EA  GDNVGFNVKNV+VKDLKRGYVASNSKDDPAK A+NFT+QVII+NHPGQIGNGYAPVLDCHTSHIAVKFAE++TKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIK+V+KKDP+GA
Sbjct:  289 EAHPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAANFTAQVIIINHPGQIGNGYAPVLDCHTSHIAVKFAELMTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNVEKKDPTGA 437          
BLAST of FC925607 vs. ExPASy Swiss-Prot
Match: EF1A_MAIZE (Elongation factor 1-alpha OS=Zea mays GN=EF1A PE=3 SV=1)

HSP 1 Score: 281.182 bits (718), Expect = 3.083e-75
Identity = 137/150 (91.33%), Postives = 146/150 (97.33%), Query Frame = 1
Query:    1 QEALLGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSGA 450
            QEAL GDNVGFNVKNV+VKDLKRGYVAS SKDDPAK A++FTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAE++TKIDRRSGKELEKEPKFLKNGDAG VKM+PTKPMVVETFS+YPPLGRFAVRDMRQTVAVGVIKSV+KKDP+GA
Sbjct:  288 QEALPGDNVGFNVKNVAVKDLKRGYVASGSKDDPAKEAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMVPTKPMVVETFSQYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTGA 437          
The following BLAST results are available for this feature:
BLAST of FC925607 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 171
Match NameE-valueIdentityDescription
EF1A_TOBAC2.522e-7794.00Elongation factor 1-alpha OS=Nicotiana tabacum PE=... [more]
EF1A_SOLLC3.294e-7793.33Elongation factor 1-alpha OS=Solanum lycopersicum ... [more]
EF1A_ARATH3.294e-7794.63Elongation factor 1-alpha OS=Arabidopsis thaliana ... [more]
EF1A_MANES5.619e-7795.33Elongation factor 1-alpha OS=Manihot esculenta GN=... [more]
EF1A_ORYSJ4.757e-7692.67Elongation factor 1-alpha OS=Oryza sativa subsp. j... [more]
EF1A2_DAUCA4.757e-7693.33Elongation factor 1-alpha OS=Daucus carota PE=2 SV... [more]
EF1A_VICFA1.808e-7591.95Elongation factor 1-alpha OS=Vicia faba PE=2 SV=1[more]
EF1A1_DAUCA1.808e-7592.62Elongation factor 1-alpha OS=Daucus carota PE=3 SV... [more]
EF1A_SOYBN3.083e-7591.95Elongation factor 1-alpha OS=Glycine max GN=TEFS1 ... [more]
EF1A_MAIZE3.083e-7591.33Elongation factor 1-alpha OS=Zea mays GN=EF1A PE=3... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YL02FM1 TF Citrus clementina cDNA clone KN0AAP3YL02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925607 ID=FC925607; Name=FC925607; organism=Citrus clementina; type=EST; length=634bp
CAGGAGGCACTTCTTGGTGATAATGTGGGGTTCAACGTTAAGAATGTTTC
AGTGAAGGATCTTAAGCGTGGTTACGTTGCATCTAACTCCAAGGACGATC
CCGCCAAGGGGGCATCCAACTTCACCTCCCAAGTTATCATCATGAACCAC
CCTGGCCAGATTGGAAACGGTTATGCACCTGTTCTTGATTGCCACACTTC
CCACATAGCTGTCAAGTTTGCTGAAATCTTGACCAAGATTGACAGGCGAT
CTGGTAAGGAGCTGGAGAAGGAGCCCAAATTCTTAAAGAATGGTGATGCT
GGGTTTGTTAAGATGATTCCCACCAAGCCTATGGTTGTGGAAACTTTCTC
CGAATATCCCCCACTTGGTCGTTTTGCTGTGAGAGACATGCGCCAGACCG
TCGCTGTTGGAGTCATCAAGAGCGTGGACAAGAAGGATCCATCTGGAGCC
AAGGTAACCAAGTCTGCTGTGAAGAAGAAGTGAACTGTGCTGGTATCTTT
GTCTGCAAGTAATGTCTATAGGCGTCATCACAATAAAGATTGTGTTCTTT
TTAGGCATAAATGTGTTGGATGTTTGGGTCGTCAATTTGCTGGTTATAAT
TACAATTCGTCCCCATCGACAAGAGACTTTTTGT
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