FC925608

Overview
NameFC925608
Unique NameFC925608
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC925608_ssr235 microsatellite FC925608_ssr235:235..249. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig696 contig Ccv1_Contig696:18..712. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925608 vs. ExPASy Swiss-Prot
Match: ELI_PEA (Early light-induced protein, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.160e-51
Identity = 112/177 (63.28%), Postives = 132/177 (74.58%), Query Frame = 3
Query:  144 RSGANQLSSVK--YLPSLRRNVNLSVRCTAXXXXXXXXXXXX-PTIPKAE---PQPP--KKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFLTSDAELWNGRFAMLGLVALAFTEFVKGGTLV 650
            RS  NQ +++   Y+P+LRRNV+L VR  A             PT P A    PQP   + P+MST FS++ AFSGPAPERINGRLAMIGFVAA+GVEI+KGQ +  QLS GGVAWFLGTSVLL++ASL+P F+GVSVESKS   ++SDAE WNGR AMLGLVALAFTEFVKG +LV
Sbjct:   20 RSRVNQFTNIPSVYIPTLRRNVSLKVRSMAEGEPKEQSKVAVDPTTPTASTPTPQPAYTRPPKMSTKFSDLMAFSGPAPERINGRLAMIGFVAAMGVEIAKGQGLSEQLSGGGVAWFLGTSVLLSLASLIPFFQGVSVESKSKSIMSSDAEFWNGRIAMLGLVALAFTEFVKGTSLV 196          
BLAST of FC925608 vs. ExPASy Swiss-Prot
Match: DS22_CRAPL (Desiccation stress protein DSP-22, chloroplastic OS=Craterostigma plantagineum GN=DSP-22 PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.319e-37
Identity = 91/198 (45.96%), Postives = 126/198 (63.64%), Query Frame = 3
Query:   75 MAASLATQSMLASPVAARVTGIRRSGANQLSSVKY---LPSLRRNVNLSVRCTAXXXXXXXXXXXXP--TIPKAEPQPPKKPRMSTGFS-EVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFLTSDAELWNGRFAMLGLVALAFTEFVKGGTLV 650
            MA+S    ++ A     + T I R G N L   K    LP +RRN   +VR                  T        P +  ++T  + ++F+F G APERINGR AMIGFVAA+GVE++ G+DVF+Q+ +GGV WFL TS +L +A+L+P+++G+S E+K++GF  SDAE+WNGRFAM+GLVALAFTE+VKGG L+
Sbjct:    1 MASSTCYATIPAMSCRGQST-ITRFGPNNLFLGKQSYELPLMRRNAKFTVRSMREDNEKEEQQQQKQQQTHDGGPDLTPNRTEVTTKRTVDLFSFDGLAPERINGRSAMIGFVAAVGVELATGRDVFSQVFNGGVMWFLLTSAVLVLATLIPIYRGLSPEAKNNGFWNSDAEIWNGRFAMIGLVALAFTEYVKGGPLI 197          
BLAST of FC925608 vs. ExPASy Swiss-Prot
Match: ELI5_HORVU (High molecular mass early light-inducible protein HV58, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.008e-32
Identity = 75/131 (57.25%), Postives = 93/131 (70.99%), Query Frame = 3
Query:  264 PTIPKAEPQPPKKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLS--DGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFLTSDAELWNGRFAMLGLVALAFTEFVKGGTLV 650
            PT   A P+P  K + +    +  AFSGPAPERINGRLAM+GFVAAL VE ++G  +  Q+     G+AWFL T+ + +VASL+PL +G SVESKS G  ++DAELWNGRFAMLGLVALA TEF+ G   V
Sbjct:  100 PTTIPAAPKPVTK-KANPSVWDALAFSGPAPERINGRLAMVGFVAALSVEAARGGGLLDQVGMWSSGLAWFLATAGVFSVASLLPLLQGQSVESKSSGIWSADAELWNGRFAMLGLVALAATEFITGAPFV 229          
BLAST of FC925608 vs. ExPASy Swiss-Prot
Match: ELI9_HORVU (Low molecular mass early light-inducible protein HV90, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.004e-32
Identity = 85/189 (44.97%), Postives = 111/189 (58.73%), Query Frame = 3
Query:   87 LATQSMLASPVAARVTGIRRSGANQLSSVKYLPSLRRNVNLSVRCTAXXXXXXXXXXXXPTIPKAEPQPPKKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDG-GVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFLTSDAELWNGRFAMLGLVALAFTEFVKGGTLV 650
            +AT   ++S   A V  + RS A+   + + LP+L R   L VR               P+ P     PP KP+ ST   +  AFSGPAPERINGRLAM+GFV AL VE  +G  + +QL  G G AWF  T  +L++ASLVPL +G S E ++   + ++AELWNGRFAMLGLVALA TE + G   +
Sbjct:    1 MATMMSMSSFAGAAV--VPRSSASSFGA-RSLPALGRRA-LVVRAQTEG----------PSAP-----PPNKPKASTSIWDEMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAVLSMASLVPLLQGESAEGRAGAIMNANAELWNGRFAMLGLVALAATEIITGAPFI 170          
BLAST of FC925608 vs. ExPASy Swiss-Prot
Match: ELI6_HORVU (Low molecular mass early light-inducible protein HV60, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.115e-31
Identity = 67/117 (57.26%), Postives = 84/117 (71.79%), Query Frame = 3
Query:  291 PPKKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDG-GVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFLTSDAELWNGRFAMLGLVALAFTEFVKG 638
            PP KP+ ST   +  AFSGPAPERINGRLAM+GFV AL VE  +G  + +QL  G G AWF  T  +L++ASLVPL +G S E ++   + ++AELWNGRFAM+GLVALA TE + G
Sbjct:   45 PPNKPKASTSIWDAMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAMLSMASLVPLLQGESAEGRAGAIMNANAELWNGRFAMIGLVALAATEIITG 161          
BLAST of FC925608 vs. ExPASy Swiss-Prot
Match: CBR_DUNBA (Carotene biosynthesis-related protein CBR, chloroplastic OS=Dunaliella bardawil GN=CBR PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.846e-18
Identity = 61/128 (47.66%), Postives = 73/128 (57.03%), Query Frame = 3
Query:  267 TIPKAEPQPPKKPRMSTG--FSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSD--GFLTSDAELWNGRFAMLGLVALAFTEFVKG 638
            T P + P PP  P        +EV  FSG APE INGRLAM+GFVAALG E+S G+ V  QL D      L T VL + ASL+P F       K D  G  T DAE+ NGRFAM+G  A+   E ++G
Sbjct:   47 TPPPSSPSPPPPPPTPAAPTVTEVMGFSG-APEIINGRLAMLGFVAALGAELSTGESVLTQLGDQPTLIAL-TFVLFSAASLIPAF----ARRKGDAMGPFTPDAEMTNGRFAMIGFAAMLVYEGIQG 168          
The following BLAST results are available for this feature:
BLAST of FC925608 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
ELI_PEA2.160e-5163.28Early light-induced protein, chloroplastic OS=Pisu... [more]
DS22_CRAPL2.319e-3745.96Desiccation stress protein DSP-22, chloroplastic O... [more]
ELI5_HORVU1.008e-3257.25High molecular mass early light-inducible protein ... [more]
ELI9_HORVU5.004e-3244.97Low molecular mass early light-inducible protein H... [more]
ELI6_HORVU1.115e-3157.26Low molecular mass early light-inducible protein H... [more]
CBR_DUNBA1.846e-1847.66Carotene biosynthesis-related protein CBR, chlorop... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP11YH12FM1 TF Citrus clementina cDNA clone KN0AAP11YH12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925608 ID=FC925608; Name=FC925608; organism=Citrus clementina; type=EST; length=696bp
CAAGGAACCCGCCCTTCTGAAGCACCCAATTCCCGAATTATACTTTGTTC
TGTTTTCTACTTCATAAATTAAAAATGGCCGCATCACTTGCTACTCAATC
TATGCTGGCAAGTCCTGTAGCAGCTCGTGTGACTGGTATCAGGAGATCCG
GGGCAAACCAACTTTCCTCCGTCAAGTACTTGCCTAGTCTGCGTAGAAAT
GTCAACTTATCCGTGCGCTGCACGGCAGAGGATGAGCAGCAGCAGCAGCA
GAAAGATGATCAACCAACCATACCGAAAGCTGAGCCTCAGCCACCAAAGA
AGCCGCGGATGAGCACGGGGTTCTCTGAGGTGTTCGCGTTCAGCGGGCCG
GCACCGGAGAGGATAAACGGGAGGCTTGCGATGATTGGGTTCGTGGCTGC
ATTGGGGGTGGAGATATCCAAGGGTCAGGATGTGTTTGCCCAGTTATCAG
ACGGTGGGGTTGCCTGGTTCTTGGGGACCAGTGTTTTGCTCACGGTTGCG
TCCCTGGTTCCTTTGTTTAAAGGTGTCAGCGTGGAGTCTAAATCGGATGG
GTTCCTGACTTCGGATGCTGAGTTGTGGAATGGGAGGTTTGCTATGCTGG
GCCTTGTTGCTTTGGCTTTCACCGAGTTTGTTAAGGGTGGCACCCTTGTT
TAAGCCTTAATTTTGTTTAGATCTGTAGATCTGGATTTTTTTTAAC
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