FC925618

Overview
NameFC925618
Unique NameFC925618
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length790
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925618 vs. ExPASy Swiss-Prot
Match: IAA9_ARATH (Auxin-responsive protein IAA9 OS=Arabidopsis thaliana GN=IAA9 PE=1 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 3.182e-44
Identity = 98/162 (60.49%), Postives = 117/162 (72.22%), Query Frame = 2
Query:  230 EEEGQSNVSLMASSP-SDCISQN-VSGLQERNYLGLXXXXXXXXXXXXXLPVDNKNKLNLKATELRLGLPGSESPEREPDLSLLSSGKLDEKPLFPLLPSKDGICPGSQKNVVSGNKRGFSDTMDRFSEVKSSVYTEKNWMFSVGPDSESPQSVGQGKFPGN 709
            EEE QSNVS+ +SSP S+CIS+N + GL+E NYLGL             L  D+K  ++LKATEL LGLPGS+SP R+ +L+LLS  KLDEKP FPLLPSKD IC  SQKN  SGNKRGFSDTMD+F+E KSSVYTEKNWMF   P++ + QSV +   P N
Sbjct:    4 EEELQSNVSVASSSPTSNCISRNTLGGLKEHNYLGLSDCSSVGSSTLSPLAEDDKATISLKATELTLGLPGSQSPARDTELNLLSPAKLDEKPFFPLLPSKDEICSSSQKNNASGNKRGFSDTMDQFAEAKSSVYTEKNWMF---PEAAATQSVTKKDVPQN 162          
BLAST of FC925618 vs. ExPASy Swiss-Prot
Match: IAA8_ARATH (Auxin-responsive protein IAA8 OS=Arabidopsis thaliana GN=IAA8 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.043e-23
Identity = 65/108 (60.19%), Postives = 69/108 (63.89%), Query Frame = 2
Query:  305 LQERNYLGLXXXXXXXXXXXXXLPVDNKNKLNLKATELRLGLPGSESPEREPDLSLLSSGKLDEKPLFPLLPSKD-GICPGSQKNVVSGNKRGFSDTMDRFSEVKSSV 625
            L+ERNYLGL               V  K+ LN KATELRLGLP S+SPERE D  LLS    DEK LFPLLPSKD G      KNVVSGNKRGF+DT D FS VK SV
Sbjct:   19 LKERNYLGLSDCSSVDSSTIPN--VVGKSNLNFKATELRLGLPESQSPERETDFGLLSPRTPDEKLLFPLLPSKDNGSATTGHKNVVSGNKRGFADTWDEFSGVKGSV 124          
The following BLAST results are available for this feature:
BLAST of FC925618 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
IAA9_ARATH3.182e-4460.49Auxin-responsive protein IAA9 OS=Arabidopsis thali... [more]
IAA8_ARATH4.043e-2360.19Auxin-responsive protein IAA8 OS=Arabidopsis thali... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP3YL06FM1 TF Citrus clementina cDNA clone KN0AAP3YL06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925618 ID=FC925618; Name=FC925618; organism=Citrus clementina; type=EST; length=790bp
CTTAAACTCTCTCTCTCTCTCTCTCACACCTTTGACCCTGTTTTTCTTTC
TATACAGTTCGTGCATTTACTTGTAAAATTTCTTTAGGTACAATCGATCT
TCTCTACTTCATTTGCTCCGCAACGGCTGCTCAGAAATAAAGCTGCAAGT
TTGATCTGGAATATGTTCACGCTTAGCAGTTACTGGGCAATTTTTAAGTC
TGATGTCTCCACCGCTGCTCCTCGGCGTTGAGGAGGAAGGGCAGAGCAAT
GTCTCTTTAATGGCCTCTTCGCCTTCTGACTGTATCTCCCAAAACGTCTC
TGGGTTACAAGAACGGAACTATCTGGGTTTGTCAGACTGTTCCTCAGTTG
ACAGTTCTGCAGCCTCCAGCTTGCCAGTGGACAACAAGAACAAACTGAAT
TTAAAGGCTACAGAGTTGAGGCTTGGTCTTCCTGGATCTGAATCCCCCGA
GAGAGAACCGGACCTTTCTTTACTTAGTTCAGGGAAGCTTGATGAGAAAC
CACTGTTTCCATTGCTTCCTTCTAAGGATGGAATCTGCCCTGGATCACAG
AAGAATGTTGTTTCCGGAAATAAAAGAGGATTCTCGGACACCATGGATCG
ATTTTCAGAGGTGAAAAGTTCTGTCTATACTGAAAAGAATTGGATGTTCT
CGGTTGGGCCTGATTCTGAATCTCCACAATCAGTGGGACAAGGGAAGTTT
CCTGGTAATTCAGGAATGAATCCGATGGTAAGGCCCACTGGGGCTCAACA
AGCCATAATGAAAGAGATGGCTCCCAATGCATTGGAACGG
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