FC925724

Overview
NameFC925724
Unique NameFC925724
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length784
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7459 contig Ccv1_Contig7459:39..822. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925724 vs. ExPASy Swiss-Prot
Match: HMGL_IPONI (HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 7.454e-30
Identity = 72/132 (54.55%), Postives = 88/132 (66.67%), Query Frame = 3
Query:   15 LKGGRSKADAVGTDSKLKSKGARAGKRTXXXXXXXXXXXXXXXXSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNAAEENESDKSKSEVN 410
            +KGG+SKA +   D+KL  K  +A                    SAFFVFME+FRK +KE HPNNKSVA VGKA G+KWK ++  EKAPF+ +AEKRK +Y KN+Q YNK+ A G  AAEE ESDKS+SEVN
Sbjct:    1 MKGGKSKAKS---DNKLAVK-KQAADTKKTKKAVKDPNKPKRPPSAFFVFMEDFRKTYKEKHPNNKSVAVVGKAGGDKWKQLTAAEKAPFISKAEKRKQEYEKNLQAYNKKQAAG--AAEEEESDKSRSEVN 126          
BLAST of FC925724 vs. ExPASy Swiss-Prot
Match: HMGL_SOYBN (HMG1/2-like protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.699e-29
Identity = 67/136 (49.26%), Postives = 86/136 (63.24%), Query Frame = 3
Query:   15 LKGGRSKADAVGTDSKL----KSKGARAGKRTXXXXXXXXXXXXXXXXSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNAAEENESDKSKSEVN 410
            +KGG+SK ++   D KL    K    +A K                  SAFFVFMEEFRK F + HP NK+V+ VGKAAG KWK+MS+ EKAP+V ++EKRK +Y KNM+ YNK+ A+G    +E ES+KS SEVN
Sbjct:    1 MKGGKSKTESKRADPKLAVNKKGAATKARKPAGKGKAAKDPNKPKRPPSAFFVFMEEFRKVFNKEHPENKAVSAVGKAAGAKWKTMSDAEKAPYVAKSEKRKVEYEKNMRAYNKKQAEGPTGGDEEESEKSVSEVN 136          
BLAST of FC925724 vs. ExPASy Swiss-Prot
Match: HMGL_VICFA (HMG1/2-like protein OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.554e-27
Identity = 68/137 (49.64%), Postives = 89/137 (64.96%), Query Frame = 3
Query:   15 LKGGRSKADAVGTDSKL--KSKGARA---GKRTXXXXXXXXXXXXXXXXSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNAAEENESDKSKSEVN 410
            +KGG+SK ++   ++KL    KGA A   GK+                 SAFFVFM +FR+Q+K+ HPNNKSVA VGKA GE+WKS+SE+EKAP+V+RA K+K +Y   +Q YNK+L       +E  SDKSKSEVN
Sbjct:    1 MKGGKSKGESKKAETKLAVNKKGAAATKGGKKPAKGKEPKDPNKPKRPPSAFFVFMADFREQYKKDHPNNKSVAAVGKACGEEWKSLSEEEKAPYVDRALKKKEEYEITLQAYNKKLE---GKDDEEGSDKSKSEVN 134          
BLAST of FC925724 vs. ExPASy Swiss-Prot
Match: MNB1B_MAIZE (DNA-binding protein MNB1B OS=Zea mays GN=MNB1B PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.244e-26
Identity = 70/142 (49.30%), Postives = 86/142 (60.56%), Query Frame = 3
Query:   15 LKGGRSKADAVGTDSKL--KSKGARAGKRTXXXXXXXXXXXXXXXXSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYNKQLADGVNAA--------EENESDKSKSEVN 410
            +KG +SK  A   D+KL  KSKGA    +                 SAFFVFMEEFRK+FKE +P NKSVA VGKAAG++WKS+SE +KAP+V +A K K +YNK +  YNK  +     A        +E ESDKSKSEVN
Sbjct:    1 MKGAKSKG-AAKADAKLAVKSKGAEKPAKGRKGKAGKDPNKPKRAPSAFFVFMEEFRKEFKEKNPKNKSVAAVGKAAGDRWKSLSESDKAPYVAKANKLKLEYNKAIAAYNKGESTAAKKAPAKEEEEEDEEESDKSKSEVN 141          
BLAST of FC925724 vs. ExPASy Swiss-Prot
Match: HMGL_WHEAT (HMG1/2-like protein OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.231e-24
Identity = 69/146 (47.26%), Postives = 86/146 (58.90%), Query Frame = 3
Query:   15 LKGGRSKADAVGTDSKL--KSKGA-RAGKRTXXXXXXXXXXXXXXXXSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDYN-----------KQLADGVNAAEENESDKSKSEVN 410
            +KG +SK  A   D+KL  KSKGA +   +                 SAFFVFM EFR++FK+ +P NKSVA VGKAAGE+WKS+SE EKAP+V +A K K +YNK +  YN           K  A  V   +E ESDKSKSE+N
Sbjct:    1 MKGAKSKG-AAKADAKLAVKSKGAEKPAAKGKKGKAGKDPNKPKRAPSAFFVFMGEFREEFKQKNPKNKSVAAVGKAAGERWKSLSESEKAPYVAKANKLKGEYNKAIAAYNKGESAAAAAPKKAAAKEVEEEDEEESDKSKSEIN 145          
BLAST of FC925724 vs. ExPASy Swiss-Prot
Match: HMGB3_BOVIN (High mobility group protein B3 OS=Bos taurus GN=HMGB3 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 3.478e-11
Identity = 46/136 (33.82%), Postives = 67/136 (49.26%), Query Frame = 3
Query:   30 SKADAVGTDSKLKSKG-ARAGKRTXXXXXXXXXXXXXXXXSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSEDEKAPFVERAEKRKSDYNKNMQDY-NKQLADGVNAA---------EENESDKSKSE 404
            +KAD V  D ++K  G A+ GK+                 S FF+F  EFR + K A+P   S+  V K  GE W ++S+ EK P++ +A K K  Y K++ DY +K   DG   A         EE+E D+ + E
Sbjct:   64 AKADKVRYDREMKDYGPAKGGKKKKDPNAPKRPP------SGFFLFCSEFRPKIKSANPGI-SIGDVAKKLGEMWNNLSDSEKQPYINKAAKLKEKYEKDVADYKSKGKFDGAKGAAKVARKKVEEEDEEDEEEEE 192          
The following BLAST results are available for this feature:
BLAST of FC925724 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
HMGL_IPONI7.454e-3054.55HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1[more]
HMGL_SOYBN3.699e-2949.26HMG1/2-like protein OS=Glycine max PE=2 SV=1[more]
HMGL_VICFA1.554e-2749.64HMG1/2-like protein OS=Vicia faba PE=2 SV=1[more]
MNB1B_MAIZE2.244e-2649.30DNA-binding protein MNB1B OS=Zea mays GN=MNB1B PE=... [more]
HMGL_WHEAT1.231e-2447.26HMG1/2-like protein OS=Triticum aestivum PE=2 SV=1[more]
HMGB3_BOVIN3.478e-1133.82High mobility group protein B3 OS=Bos taurus GN=HM... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP8YO15FM1 TF Citrus clementina cDNA clone KN0AAP8YO15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925724 ID=FC925724; Name=FC925724; organism=Citrus clementina; type=EST; length=784bp
CACCAGGATTCATCTTGAAAGGAGGCAGATCGAAAGCTGACGCCGTAGGA
ACTGATAGCAAGCTGAAGAGCAAAGGGGCGAGAGCCGGCAAGCGAACAGC
GAAGCCCAAGGCTGCGAAAGATCCAAACAAGCCGAAGAGGCCTCCTAGTG
CTTTCTTCGTTTTCATGGAGGAGTTCAGGAAGCAGTTCAAAGAAGCTCAT
CCTAACAATAAATCTGTTGCTACTGTTGGCAAAGCTGCTGGAGAAAAATG
GAAGTCAATGTCAGAAGATGAGAAAGCGCCATTCGTTGAAAGGGCTGAGA
AAAGAAAGTCTGATTACAACAAGAACATGCAGGATTACAACAAGCAGTTG
GCTGATGGAGTAAATGCTGCTGAGGAAAATGAATCTGACAAGTCCAAGTC
TGAAGTGAATGATGAGGATGATGAAGAAGGCAGTGGAGAGGAGGAAGATG
ATGACTAGAGAATGGCAGCGAAGGATTCAAAAATGTTGAAGTTTTAGCAA
TCTAGTAGAATTGCTTATAACATGATAACCCTTAGCCTTTTAGATTAGAT
TAGGAAAGAAATCAAGTGTTGTTCAGGATTTACTGAAGCACCATATGGAT
GGATATGTACCTAAATGTTCTCTTAAGTCTTTAATCATCTAGTTTCAACA
TTTATATGTATTATTTATTTGTCTATCCTGTTGCTTTATTCAGTTATTTT
TCATGTTGGTGCACATTGGCCACTGCTTGTTGGTTGCTTTTGAATGTCAA
TTGCGATTATAGCATTTTGTGTTCAGGGCGGCAG
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