FC925731

Overview
NameFC925731
Unique NameFC925731
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length762
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13520 contig Ccv1_Contig13520:49..810. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925731 vs. ExPASy Swiss-Prot
Match: SFR2_ORYSJ (Beta-glucosidase-like SFR2, chloroplastic OS=Oryza sativa subsp. japonica GN=SFR2 PE=2 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 1.394e-65
Identity = 137/262 (52.29%), Postives = 169/262 (64.50%), Query Frame = 1
Query:    1 MTIVILLVSATQLAGILVTVTVAANAFSFSRYRKKNLLPLRSPIDESADILASF------NVDAEGEDEFFFGLATAPAHVEDRLNDAWLQFA-EDEPRKKSYKEVLEPADALMGAAAGDVGSQQAPLPSNEVNXXXXXXXXXX-LSIEAMIRGFQKYIEVDEGEEVSGENEVPTENEEVHHKVTAWHNVPHPEERLRFWSDPDIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKV 762
            M +   + +A +LA ++     AANA S++RYR+++L  + SPIDESAD LA F      + D   ED FFFGLATAPAHVEDRL DAWLQFA E             P DALM +AAGD GSQQ+   +   N           +++EAM+RGF+  I  + GE   G+N          H V AWHNVP P+ERLRFWSDPD ELKLAK+TG+SVFR+G+DW+R+MP EP   LK +VNFAALERY+WII RVR YGMKV
Sbjct:    1 MPLPAFVAAAARLAVLVAAAATAANAASYARYRRRHLRRIPSPIDESADPLADFRAFPSSDADDSEEDNFFFGLATAPAHVEDRLEDAWLQFATETSCDDNGNVRDQRPVDALMASAAGDGGSQQSWRSTGGENIGDREQRKPLRVAMEAMLRGFE--ILAESGESAGGDN--------CSHNVAAWHNVPCPQERLRFWSDPDAELKLAKETGISVFRMGVDWARLMPEEPTEELKSSVNFAALERYRWIIQRVREYGMKV 252          
BLAST of FC925731 vs. ExPASy Swiss-Prot
Match: SFR2_ARATH (Beta-glucosidase-like SFR2, chloroplastic OS=Arabidopsis thaliana GN=SFR2 PE=1 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 5.871e-56
Identity = 118/254 (46.46%), Postives = 158/254 (62.20%), Query Frame = 1
Query:    1 MTIVILLVSATQLAGILVTVTVAANAFSFSRYRKKNLLPLRSPIDESADILASFNVDAEGEDEFFFGLATAPAHVEDRLNDAWLQFAEDEPRKKSYKEVLEPADALMGAAAGDVGSQQAPLPSNEVNXXXXXXXXXXLSIEAMIRGFQKYIEVDEGEEVSGENEVPTENEEVHHKVTAWHNVPHPEERLRFWSDPDIELKLAKDTGVSVFRLGIDWSRIMPAEPVNGLKETVNFAALERYKWIINRVRSYGMKV 762
            M +  LL+   ++AG+L TVTV AN  S+SR+R++NL   RSPIDES ++LA FN     E +FFFGLATAPAH ED L+DAWLQFA++ P      E            A D  +++  +                L++ A+ +G  K       E+ +  ++ P++N      V AWHN PH E+RL+FWSDPD E+KLAKDTGV+VFR+G+DWSRIMP EP  G+KE VN+ A+E YKWI+ +VRS GMKV
Sbjct:    1 MELFALLI---KVAGLLATVTVGANVVSYSRFRRQNLAKFRSPIDESKEVLADFNSIEHEEGKFFFGLATAPAHAEDDLDDAWLQFAKETPCSAEEAE------------AADKKARRKKVK---------------LAVGAITKGLAK--NTHGKEDKNAADKPPSKN------VAAWHNAPHAEDRLKFWSDPDKEVKLAKDTGVTVFRMGVDWSRIMPVEPTKGIKEAVNYEAVEHYKWILKKVRSNGMKV 216          
The following BLAST results are available for this feature:
BLAST of FC925731 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
SFR2_ORYSJ1.394e-6552.29Beta-glucosidase-like SFR2, chloroplastic OS=Oryza... [more]
SFR2_ARATH5.871e-5646.46Beta-glucosidase-like SFR2, chloroplastic OS=Arabi... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP8YO18FM1 TF Citrus clementina cDNA clone KN0AAP8YO18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925731 ID=FC925731; Name=FC925731; organism=Citrus clementina; type=EST; length=762bp
ATGACAATAGTAATACTGCTTGTATCGGCGACGCAGCTCGCCGGAATCTT
AGTGACGGTGACTGTGGCGGCGAACGCCTTCTCTTTTTCGCGTTATCGGA
AAAAGAACCTCCTGCCGTTGCGGTCTCCAATTGACGAGTCTGCTGATATT
CTGGCCTCCTTCAATGTCGACGCGGAAGGGGAAGATGAGTTTTTCTTCGG
ATTGGCTACGGCACCAGCACATGTTGAGGACAGACTTAATGATGCTTGGC
TTCAGTTTGCAGAAGACGAGCCAAGAAAGAAGTCATATAAGGAGGTTTTG
GAACCTGCAGATGCATTAATGGGTGCAGCTGCTGGTGATGTTGGGTCTCA
GCAAGCTCCATTACCGAGTAATGAAGTTAATAAGACGAAGAAGAAAAGGA
AGCCTGTTAAGTTAAGCATAGAAGCTATGATTAGGGGATTTCAAAAGTAC
ATAGAAGTAGATGAAGGAGAAGAAGTATCGGGAGAAAATGAAGTACCAAC
AGAAAATGAAGAAGTCCATCACAAAGTAACTGCATGGCACAATGTTCCTC
ACCCGGAAGAAAGGCTACGATTTTGGTCTGATCCTGATATAGAACTGAAG
CTGGCAAAAGACACTGGTGTCAGTGTCTTTCGGCTGGGAATTGATTGGTC
AAGGATCATGCCTGCGGAGCCAGTCAATGGTCTTAAAGAAACTGTTAATT
TTGCAGCACTGGAGCGATATAAGTGGATCATCAATAGGGTTCGCTCCTAT
GGAATGAAAGTG
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