FC925748

Overview
NameFC925748
Unique NameFC925748
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14670 contig Ccv1_Contig14670:1..706. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925748 vs. ExPASy Swiss-Prot
Match: PCKA_ARATH (Phosphoenolpyruvate carboxykinase [ATP] OS=Arabidopsis thaliana GN=PCKA PE=1 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.392e-45
Identity = 111/195 (56.92%), Postives = 127/195 (65.13%), Query Frame = 1
Query:  142 AANGNGEFSFGKGTARKGLAKIQTAASQKKQSAICHDDSTPPVKAQTIDELHSLQKKRSAPNTPI-KGTQGSFSPLSDEARXXXXXXXXXXXXXXXTRETGPKVVRGDPARK----AETPKFAADPGDHFS-FTP-TISVSDSSLKFTHVLYNLSPAELYEQAIKYEKGSFIXXXXXXXXXXXXKTGRSPRDKRV 705
            A NG+G FSF KG     + KI T A+ K+ S +CHDDS P V A TIDELHSLQKKRSAP TPI +    +F+ +S+E R               TRE+GPKVVRGDPA K    + TP +A   G H S F+P T +VSDSSLKFTHVLYNLSPAELYEQAIKYEKGSFI            KTGR+PRDKRV
Sbjct:    8 ATNGDGGFSFPKGPV---MPKITTGAA-KRGSGVCHDDSGPTVNATTIDELHSLQKKRSAPTTPINQNAAAAFAAVSEEERQKIQLQSISASLASLTRESGPKVVRGDPAEKKTDGSTTPAYAH--GQHHSIFSPATGAVSDSSLKFTHVLYNLSPAELYEQAIKYEKGSFITSNGALATLSGAKTGRAPRDKRV 196          
BLAST of FC925748 vs. ExPASy Swiss-Prot
Match: PCKA_CUCSA (Phosphoenolpyruvate carboxykinase [ATP] OS=Cucumis sativus GN=PCK PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 7.695e-44
Identity = 101/196 (51.53%), Postives = 121/196 (61.73%), Query Frame = 1
Query:  136 EMAANGNGEFSF----GKGTARKGLAKIQTAASQKK-QSAICHDDSTPPVKAQTIDELHSLQKKRSAPNTPIKGTQGSFSPLSDEARXXXXXXXXXXXXXXXTRETGPKVVRGDPARKAETPKFAADPGDHFSF-TPTISVSDSSLKFTHVLYNLSPAELYEQAIKYEKGSFIXXXXXXXXXXXXKTGRSPRDKRV 705
            E     NGEFSF    G  T R+GL KI T  +    +  ICHDDST P++A+T++ LHSLQKKRS P TP+  +QG FSP+S+  R               TRETGPK+V+GDP +K E  K  A   DH  F  P +++SDS+LK TH+LYN SPAELYEQAIKYEKGSFI            KTGRSP DKRV
Sbjct:    2 ENEGKDNGEFSFVSDGGAETGRRGLPKIHTEKNAPTTERDICHDDSTTPMRARTLEHLHSLQKKRSTPTTPLTDSQGVFSPVSEAERQKQQLISISASLASLTRETGPKLVKGDPEKKKEAHK--ASVLDHLHFGEPILNLSDSALKSTHILYNPSPAELYEQAIKYEKGSFITSTGALATLSGAKTGRSPIDKRV 195          
BLAST of FC925748 vs. ExPASy Swiss-Prot
Match: PCKA_MAIZE (Phosphoenolpyruvate carboxykinase [ATP] OS=Zea mays PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.317e-40
Identity = 101/189 (53.44%), Postives = 116/189 (61.38%), Query Frame = 1
Query:  193 GLAKIQTAASQKKQSAICHDDSTPPVKAQTIDELHSLQKKRSAPNTP--------IKGTQGSFSP----LSDEARXXXXXXXXXXXXXXXTRETGPKVVRGDPARKAETPKFAAD--PGDHFSF----TPTISVSDSSLKFTHVLYNLSPAELYEQAIKYEKGSFIXXXXXXXXXXXXKTGRSPRDKRV 705
            GLA+I+T   +K+ + + +DDS+ PV+AQTIDELHSLQ+KRSAP TP        IKG  G+ SP    +S+E R               TRETGPKVV+GDPA K E     A   P  H        P I+VSDSSLKFTHVL NLSPAELYEQAIKYEKGSFI            KTGRSPRDKRV
Sbjct:    6 GLARIETTGKKKQDNGVWYDDSSAPVRAQTIDELHSLQRKRSAPTTPNRSAPTTPIKG--GAHSPFAVAISEEERHTQQMQSISASLASLTRETGPKVVKGDPAAKGEAAAQGAPSTPRAHQQHRHPAAPAIAVSDSSLKFTHVLNNLSPAELYEQAIKYEKGSFITSTGALATLSGAKTGRSPRDKRV 192          
BLAST of FC925748 vs. ExPASy Swiss-Prot
Match: PCKA2_UROPA (Phosphoenolpyruvate carboxykinase [ATP] 2 OS=Urochloa panicoides GN=PCK2 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.971e-23
Identity = 69/158 (43.67%), Postives = 82/158 (51.90%), Query Frame = 1
Query:  247 HD-DSTPPVKAQTIDELHSLQKKRSAPN----TPIKGTQGSFSPLSDEARXXXXXXXXXXXXXXXTRETGPKVVRGDPARKAETPKFAADPGDHFSFTPTISVSDSSLKFTHVLYNLSPAELYEQAIKYEKGSFIXXXXXXXXXXXXKTGRSPRDKRV 705
            HD DS  PV AQTI+ELHSLQ+K +       +P++    S + L+                    RE GP +V+GDP      P          +   TI+ SDSSLKFTHVLYNLSPAELYEQA   +K SFI            KTGRSPRDKRV
Sbjct:   14 HDSDSAAPVNAQTIEELHSLQRKAATTTKDGASPLQSISASLASLA--------------------REYGPNLVKGDPEATKGAPPVPIKHQQPSAAAATIAASDSSLKFTHVLYNLSPAELYEQAFGQKKSSFITSTGALATLSGAKTGRSPRDKRV 151          
BLAST of FC925748 vs. ExPASy Swiss-Prot
Match: PCKA1_UROPA (Phosphoenolpyruvate carboxykinase [ATP] 1 OS=Urochloa panicoides GN=PCK1 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.574e-23
Identity = 70/151 (46.36%), Postives = 81/151 (53.64%), Query Frame = 1
Query:  253 DSTPPVKAQTIDELHSLQKKRSAPNTPIKGTQGSFSPLSDEARXXXXXXXXXXXXXXXTRETGPKVVRGDPARKAETPKFAADPGDHFSFTPTISVSDSSLKFTHVLYNLSPAELYEQAIKYEKGSFIXXXXXXXXXXXXKTGRSPRDKRV 705
            DS  PV+AQTI+ELHSLQ+K +A        + S SPL   +                 RE GP +V+GDP  K   P  A       +    I+ SDSSLKFTHVLYNLSPAELYEQA   +K SFI            KTGRSPRDKRV
Sbjct:   17 DSAAPVRAQTIEELHSLQRKAAAT------AKDSASPLQSISASLAST----------AREYGPNLVKGDPEAKGAPP--APVKHQQAAAAAAIAASDSSLKFTHVLYNLSPAELYEQAFGQKKSSFITSTGALATLSGAKTGRSPRDKRV 149          
The following BLAST results are available for this feature:
BLAST of FC925748 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
PCKA_ARATH2.392e-4556.92Phosphoenolpyruvate carboxykinase [ATP] OS=Arabido... [more]
PCKA_CUCSA7.695e-4451.53Phosphoenolpyruvate carboxykinase [ATP] OS=Cucumis... [more]
PCKA_MAIZE2.317e-4053.44Phosphoenolpyruvate carboxykinase [ATP] OS=Zea may... [more]
PCKA2_UROPA1.971e-2343.67Phosphoenolpyruvate carboxykinase [ATP] 2 OS=Uroch... [more]
PCKA1_UROPA2.574e-2346.36Phosphoenolpyruvate carboxykinase [ATP] 1 OS=Uroch... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP3YN15FM1 TF Citrus clementina cDNA clone KN0AAP3YN15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925748 ID=FC925748; Name=FC925748; organism=Citrus clementina; type=EST; length=706bp
TTCAATTTGCGTATTACAAACTGCACTTTGAATGATCGGGCTACCTCAGC
TTTTATATTTCATCTCCCATTAGTCTTCATTTTTCTTTTTGTTCACTTTC
GTTTCAAGCTCGCAATCTCGGGGGAAGAGTCGTGAGAAATGGCAGCGAAC
GGTAACGGAGAGTTTAGCTTCGGAAAAGGAACGGCGAGGAAGGGGCTAGC
GAAGATTCAAACGGCGGCTTCGCAGAAGAAGCAGAGCGCGATATGCCACG
ACGACAGCACGCCGCCTGTTAAGGCTCAGACGATTGACGAGCTTCACTCG
CTTCAAAAGAAAAGATCTGCACCAAACACCCCCATTAAAGGGACCCAGGG
CTCTTTTTCGCCTCTTTCGGATGAGGCACGACAGAAACAGCAGCTCCAGT
CCATCAGTGCATCGTTGGCGTCACTGACAAGAGAAACAGGGCCAAAGGTG
GTGAGAGGAGATCCGGCGAGAAAGGCAGAGACACCAAAGTTTGCGGCAGA
TCCCGGTGACCATTTCTCTTTCACGCCAACAATCAGCGTCAGTGACAGTT
CCTTGAAGTTCACCCACGTTCTCTACAATCTCTCTCCTGCTGAATTGTAC
GAGCAGGCCATCAAGTATGAGAAAGGGTCGTTTATCGCGTCCAGTGGTGC
ATTGGCAACTCTGTCTGGCGCCAAGACTGGCCGCTCTCCCAGAGATAAGC
GTGTGG
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