FC925754
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC925754 vs. ExPASy Swiss-Prot
Match: C3H17_ARATH (Zinc finger CCCH domain-containing protein 17 OS=Arabidopsis thaliana GN=At2g02160 PE=1 SV=1) HSP 1 Score: 187.193 bits (474), Expect = 5.470e-47 Identity = 86/128 (67.19%), Postives = 101/128 (78.91%), Query Frame = 2 Query: 215 EKEALKRNTDCVYFLASPLTCKKGSECEYRHNEYARVNPRDCYFWLNGNCLNPKCGFRHPPLDGLIGTQMAVSTGTYFPSSHSTTMPAAHASNNSGKQAVPCIFFQKGLCIKGEKCAFLHGPNTAVYQ 598 E++ALK NTDCVYFLASPLTCKKG ECEYRH+EYAR+NPRDCY+WLNGNCLNPKCGFRHPPL+GL+G Q + P H+T A H S KQ VPC+FFQKG+C+KG+ C+FLH PN A Y+ Sbjct: 25 EEDALKWNTDCVYFLASPLTCKKGPECEYRHSEYARMNPRDCYYWLNGNCLNPKCGFRHPPLEGLLGNQGGAPAVSVQP-IHAT---AQHPS--VAKQPVPCLFFQKGMCMKGDMCSFLHTPNPAAYK 146
BLAST of FC925754 vs. ExPASy Swiss-Prot
Match: C3H32_ORYSJ (Zinc finger CCCH domain-containing protein 32 OS=Oryza sativa subsp. japonica GN=Os04g0671800 PE=2 SV=1) HSP 1 Score: 175.637 bits (444), Expect = 1.647e-43 Identity = 78/124 (62.90%), Postives = 98/124 (79.03%), Query Frame = 2 Query: 215 EKEALKRNTDCVYFLASPLTCKKGSECEYRHNEYARVNPRDCYFWLNGNCLNPKCGFRHPPLDGLIGTQMAVSTGTYFPSSHSTTMPAAHASNNSGKQAVPCIFFQKGLCIKGEKCAFLHGPNT 586 E+EAL+RNTDCVYFLASPLTCKKG+EC++RH++ AR+NPRDC++WLN NCLNPKC FRHPP+DG+ G A +TG SSH +A NSGKQ VPC +F+KG C+KG++CAF HGP + Sbjct: 27 EEEALRRNTDCVYFLASPLTCKKGNECDFRHSDNARMNPRDCWYWLNSNCLNPKCPFRHPPIDGMFG---APTTGMPAVSSH-------YAPFNSGKQLVPCYYFKKGNCLKGDRCAFYHGPQS 140
BLAST of FC925754 vs. ExPASy Swiss-Prot
Match: C3H19_ORYSJ (Zinc finger CCCH domain-containing protein 19 OS=Oryza sativa subsp. japonica GN=Os02g0831100 PE=2 SV=2) HSP 1 Score: 167.548 bits (423), Expect = 4.485e-41 Identity = 71/124 (57.26%), Postives = 90/124 (72.58%), Query Frame = 2 Query: 215 EKEALKRNTDCVYFLASPLTCKKGSECEYRHNEYARVNPRDCYFWLNGNCLNPKCGFRHPPLDGLIGTQMAVSTGTYFPSSHS--TTMPAAHASNNSGKQAVPCIFFQKGLCIKGEKCAFLHGP 580 E+ +R+TDC+YFLASPLTCKKGSECEYRH++ AR+NPRDC++W NGNC NPKC FRHPPLDGL+G T S P + ++ + KQ VPC +FQKG+C+KG++CAFLH P Sbjct: 12 EEARRRRSTDCIYFLASPLTCKKGSECEYRHSDAARMNPRDCWYWFNGNCANPKCSFRHPPLDGLVGAPTTPRTSQQSAPQVSVPAQAPVPNPASGTAKQGVPCYYFQKGMCVKGDRCAFLHLP 135
BLAST of FC925754 vs. ExPASy Swiss-Prot
Match: C3H34_ORYSJ (Zinc finger CCCH domain-containing protein 34 OS=Oryza sativa subsp. japonica GN=Os05g0176400 PE=2 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 6.288e-27 Identity = 58/118 (49.15%), Postives = 71/118 (60.17%), Query Frame = 2 Query: 236 NTDCVYFLASPLTCKKGSECEYRHNEYARVNPRDCYFWLNGNCLNPKCGFRHPPLDGLIGTQMAVSTGTYFPSSHSTTMPAAHASNNSGKQAVPCIFFQKGLCIKGEKCAFLHGPNTA 589 NTDCVYFLASP TC KGS+CEYRH + AR N R+C++W GNC+NP C FRHPPL+ L T+ P S +T S K A PC F+ C KG+ C +LH P T+ Sbjct: 17 NTDCVYFLASPFTCTKGSKCEYRHADGARFNRRNCWYWFKGNCVNPSCTFRHPPLENLNKTKSLAD-----PLSLCST---------SVKAANPCYFYYNSHCSKGDNCPYLHEPLTS 120 The following BLAST results are available for this feature:
BLAST of FC925754 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 4
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC925754 ID=FC925754; Name=FC925754; organism=Citrus clementina; type=EST; length=601bpback to top |