FC925754

Overview
NameFC925754
Unique NameFC925754
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length601
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14673 contig Ccv1_Contig14673:1..601. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925754 vs. ExPASy Swiss-Prot
Match: C3H17_ARATH (Zinc finger CCCH domain-containing protein 17 OS=Arabidopsis thaliana GN=At2g02160 PE=1 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 5.470e-47
Identity = 86/128 (67.19%), Postives = 101/128 (78.91%), Query Frame = 2
Query:  215 EKEALKRNTDCVYFLASPLTCKKGSECEYRHNEYARVNPRDCYFWLNGNCLNPKCGFRHPPLDGLIGTQMAVSTGTYFPSSHSTTMPAAHASNNSGKQAVPCIFFQKGLCIKGEKCAFLHGPNTAVYQ 598
            E++ALK NTDCVYFLASPLTCKKG ECEYRH+EYAR+NPRDCY+WLNGNCLNPKCGFRHPPL+GL+G Q      +  P  H+T   A H S    KQ VPC+FFQKG+C+KG+ C+FLH PN A Y+
Sbjct:   25 EEDALKWNTDCVYFLASPLTCKKGPECEYRHSEYARMNPRDCYYWLNGNCLNPKCGFRHPPLEGLLGNQGGAPAVSVQP-IHAT---AQHPS--VAKQPVPCLFFQKGMCMKGDMCSFLHTPNPAAYK 146          
BLAST of FC925754 vs. ExPASy Swiss-Prot
Match: C3H32_ORYSJ (Zinc finger CCCH domain-containing protein 32 OS=Oryza sativa subsp. japonica GN=Os04g0671800 PE=2 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.647e-43
Identity = 78/124 (62.90%), Postives = 98/124 (79.03%), Query Frame = 2
Query:  215 EKEALKRNTDCVYFLASPLTCKKGSECEYRHNEYARVNPRDCYFWLNGNCLNPKCGFRHPPLDGLIGTQMAVSTGTYFPSSHSTTMPAAHASNNSGKQAVPCIFFQKGLCIKGEKCAFLHGPNT 586
            E+EAL+RNTDCVYFLASPLTCKKG+EC++RH++ AR+NPRDC++WLN NCLNPKC FRHPP+DG+ G   A +TG    SSH       +A  NSGKQ VPC +F+KG C+KG++CAF HGP +
Sbjct:   27 EEEALRRNTDCVYFLASPLTCKKGNECDFRHSDNARMNPRDCWYWLNSNCLNPKCPFRHPPIDGMFG---APTTGMPAVSSH-------YAPFNSGKQLVPCYYFKKGNCLKGDRCAFYHGPQS 140          
BLAST of FC925754 vs. ExPASy Swiss-Prot
Match: C3H19_ORYSJ (Zinc finger CCCH domain-containing protein 19 OS=Oryza sativa subsp. japonica GN=Os02g0831100 PE=2 SV=2)

HSP 1 Score: 167.548 bits (423), Expect = 4.485e-41
Identity = 71/124 (57.26%), Postives = 90/124 (72.58%), Query Frame = 2
Query:  215 EKEALKRNTDCVYFLASPLTCKKGSECEYRHNEYARVNPRDCYFWLNGNCLNPKCGFRHPPLDGLIGTQMAVSTGTYFPSSHS--TTMPAAHASNNSGKQAVPCIFFQKGLCIKGEKCAFLHGP 580
            E+   +R+TDC+YFLASPLTCKKGSECEYRH++ AR+NPRDC++W NGNC NPKC FRHPPLDGL+G      T        S     P  + ++ + KQ VPC +FQKG+C+KG++CAFLH P
Sbjct:   12 EEARRRRSTDCIYFLASPLTCKKGSECEYRHSDAARMNPRDCWYWFNGNCANPKCSFRHPPLDGLVGAPTTPRTSQQSAPQVSVPAQAPVPNPASGTAKQGVPCYYFQKGMCVKGDRCAFLHLP 135          
BLAST of FC925754 vs. ExPASy Swiss-Prot
Match: C3H34_ORYSJ (Zinc finger CCCH domain-containing protein 34 OS=Oryza sativa subsp. japonica GN=Os05g0176400 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 6.288e-27
Identity = 58/118 (49.15%), Postives = 71/118 (60.17%), Query Frame = 2
Query:  236 NTDCVYFLASPLTCKKGSECEYRHNEYARVNPRDCYFWLNGNCLNPKCGFRHPPLDGLIGTQMAVSTGTYFPSSHSTTMPAAHASNNSGKQAVPCIFFQKGLCIKGEKCAFLHGPNTA 589
            NTDCVYFLASP TC KGS+CEYRH + AR N R+C++W  GNC+NP C FRHPPL+ L  T+         P S  +T         S K A PC F+    C KG+ C +LH P T+
Sbjct:   17 NTDCVYFLASPFTCTKGSKCEYRHADGARFNRRNCWYWFKGNCVNPSCTFRHPPLENLNKTKSLAD-----PLSLCST---------SVKAANPCYFYYNSHCSKGDNCPYLHEPLTS 120          
The following BLAST results are available for this feature:
BLAST of FC925754 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
C3H17_ARATH5.470e-4767.19Zinc finger CCCH domain-containing protein 17 OS=A... [more]
C3H32_ORYSJ1.647e-4362.90Zinc finger CCCH domain-containing protein 32 OS=O... [more]
C3H19_ORYSJ4.485e-4157.26Zinc finger CCCH domain-containing protein 19 OS=O... [more]
C3H34_ORYSJ6.288e-2749.15Zinc finger CCCH domain-containing protein 34 OS=O... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP3YN22FM1 TF Citrus clementina cDNA clone KN0AAP3YN22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925754 ID=FC925754; Name=FC925754; organism=Citrus clementina; type=EST; length=601bp
GTTTGGATTCTGATCTTGATTCGGGTTATCGGGTCCTTTTCTTCTTCAAT
AGAATTATAATTATTATTGTTGTTATTATTAATTCGATCTGAATTTGTCC
CCCCCCCCCACCCCCCCCAAAAAAAAAAAAAACNCCACCCCCATGGTCCT
CCCGGCAGCAGCTCAACAACAACATCAACAACAGCAGCAAGTGTCGACGG
CATCAGCAACAGCCGAAAAAGAAGCCTTAAAGAGAAACACTGATTGCGTT
TACTTTCTTGCTTCTCCTTTAACCTGCAAAAAGGGGAGTGAATGCGAGTA
TCGACACAATGAATATGCCAGGGTTAACCCGAGGGACTGTTATTTCTGGT
TGAATGGTAATTGTTTGAATCCCAAGTGTGGGTTCCGTCACCCCCCCCTT
GATGGCCTAATAGGAACCCAAATGGCAGTCTCTACTGGAACTTATTTTCC
TTCATCACACTCAACAACTATGCCTGCTGCACATGCCTCAAACAACTCGG
GTAAACAAGCAGTCCCATGCATTTTCTTTCAAAAGGGGCTTTGCATAAAA
GGTGAAAAATGTGCTTTTCTGCACGGACCCAATACTGCTGTTTATCAAGC
C
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