FC925756

Overview
NameFC925756
Unique NameFC925756
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length450
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC925756_ssr58 microsatellite FC925756_ssr58:58..72. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig3062 contig Ccv1_Contig3062:70..519. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925756 vs. ExPASy Swiss-Prot
Match: CYSP_PEA (Cysteine proteinase 15A OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 1.467e-40
Identity = 83/112 (74.11%), Postives = 94/112 (83.93%), Query Frame = 1
Query:  112 DDAMIRQVVPSDGEQSEDHLLNAEHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTNDLP 447
            DD +IRQVV ++    EDHLLNAEHHF+ FKSKFSK+YAT+EEHDYRF VFK+NL +AK  Q  DPTA HG+TKFSDLT SEFRRQFLGL +RLRLPA AQKAPILPT +LP
Sbjct:   26 DDFIIRQVVDNE----EDHLLNAEHHFTSFKSKFSKSYATKEEHDYRFGVFKSNLIKAKLHQNRDPTAEHGITKFSDLTASEFRRQFLGLKKRLRLPAHAQKAPILPTTNLP 133          
BLAST of FC925756 vs. ExPASy Swiss-Prot
Match: RD19A_ARATH (Cysteine proteinase RD19a OS=Arabidopsis thaliana GN=RD19A PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 3.500e-34
Identity = 72/113 (63.72%), Postives = 85/113 (75.22%), Query Frame = 1
Query:  109 GDDAMIRQVVPSDGEQSEDHLLNAEHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTNDLP 447
            GDD +IRQVV      +E  +L +E HFSLFK KF K YA+ EEHDYRF VFKANLRRA+R Q LDP+A HGVT+FSDLT SEFR++ LG+    +LP DA KAPILPT +LP
Sbjct:   28 GDDLVIRQVVGG----AEPQVLTSEDHFSLFKRKFGKVYASNEEHDYRFSVFKANLRRARRHQKLDPSATHGVTQFSDLTRSEFRKKHLGVRSGFKLPKDANKAPILPTENLP 136          
BLAST of FC925756 vs. ExPASy Swiss-Prot
Match: A494_ARATH (Probable cysteine proteinase A494 OS=Arabidopsis thaliana GN=At2g21430 PE=2 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 6.831e-30
Identity = 65/112 (58.04%), Postives = 83/112 (74.11%), Query Frame = 1
Query:  112 DDAMIRQVVPSDGEQSEDHLLNAEHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTNDLP 447
            +D +IRQVV    +++E  +L++E HF+LFK KF K Y + EEH YRF VFKANL RA R Q +DP+A HGVT+FSDLT SEFRR+ LG+    +LP DA +APILPT +LP
Sbjct:   26 EDVLIRQVV----DETEPKVLSSEDHFTLFKKKFGKVYGSIEEHYYRFSVFKANLLRAMRHQKMDPSARHGVTQFSDLTRSEFRRKHLGVKGGFKLPKDANQAPILPTQNLP 133          
BLAST of FC925756 vs. ExPASy Swiss-Prot
Match: CYSP1_MAIZE (Cysteine proteinase 1 OS=Zea mays GN=CCP1 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 3.748e-28
Identity = 66/117 (56.41%), Postives = 79/117 (67.52%), Query Frame = 1
Query:  112 DDAMIRQVVPSDGEQSEDHLLNAEHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLR-----LPADAQKAPILPTNDLP 447
            +D +IRQVVP  G    D  LNAE HF  F  +F K+Y   +EH YR  VFK NLRRA+R QLLDP+A HGVTKFSDLTP+EFRR +LGL +  R     L   A +AP+LPT+ LP
Sbjct:   24 EDPLIRQVVP--GGDDNDLELNAESHFLSFVQRFGKSYKDADEHAYRLSVFKDNLRRARRHQLLDPSAEHGVTKFSDLTPAEFRRTYLGLRKSRRALLRELGESAHEAPVLPTDGLP 138          
The following BLAST results are available for this feature:
BLAST of FC925756 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
CYSP_PEA1.467e-4074.11Cysteine proteinase 15A OS=Pisum sativum PE=2 SV=1[more]
RD19A_ARATH3.500e-3463.72Cysteine proteinase RD19a OS=Arabidopsis thaliana ... [more]
A494_ARATH6.831e-3058.04Probable cysteine proteinase A494 OS=Arabidopsis t... [more]
CYSP1_MAIZE3.748e-2856.41Cysteine proteinase 1 OS=Zea mays GN=CCP1 PE=2 SV=... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP3YN24FM1 TF Citrus clementina cDNA clone KN0AAP3YN24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925756 ID=FC925756; Name=FC925756; organism=Citrus clementina; type=EST; length=450bp
TTCTTCTTCGCAGTCCACTGAAACAAATCAAAAATGGACCGCCGTATTCT
CTCCTCTCTCCTCCTCCTCCTCCTATCTGCTGTGCTTGCGTCCGCCGTAG
CTGTCAGCGGCGACGATGCTATGATCAGACAGGTCGTGCCATCAGACGGC
GAACAATCCGAAGATCATCTCCTGAACGCGGAGCACCACTTCTCCCTCTT
CAAGTCCAAATTCTCCAAGACTTACGCCACTCAGGAGGAGCACGATTACC
GATTCCGCGTGTTCAAGGCTAACCTCCGCCGAGCAAAGCGACGCCAGCTC
CTGGACCCCACTGCTGTCCACGGTGTCACCAAGTTCTCCGACTTAACGCC
GTCTGAATTCCGCCGTCAGTTCCTTGGCTTGAATAGGCGGCTTCGGCTAC
CAGCTGACGCTCAAAAGGCTCCTATCCTCCCTACCAACGATCTTCCTACT
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