FC925857

Overview
NameFC925857
Unique NameFC925857
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length541
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC925857 vs. ExPASy Swiss-Prot
Match: RS24_ARATH (40S ribosomal protein S2-4 OS=Arabidopsis thaliana GN=RPS2D PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.385e-47
Identity = 55/61 (90.16%), Postives = 60/61 (98.36%), Query Frame = 3 
Query:  342 PVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYLG 524
            PVQKQTRAGQRTRFKAF+VVGD++GHVGLGVKCSKEVATAIRGAIILAKLSV+P+RRGY G
Sbjct:   96 PVQKQTRAGQRTRFKAFIVVGDSNGHVGLGVKCSKEVATAIRGAIILAKLSVVPIRRGYWG 156

HSP 2 Score: 94.7449 bits (234), Expect = 2.385e-47
Identity = 44/53 (83.02%), Postives = 48/53 (90.57%), Query Frame = 2 
Query:  185 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMP 343
            KWVPVTKLGRLV+EGKI  +EQIYLHSLP+KEYQIID L+G  LKDEVMKIMP
Sbjct:   44 KWVPVTKLGRLVKEGKITKIEQIYLHSLPVKEYQIIDLLVGPSLKDEVMKIMP 96
[Close]
BLAST of FC925857 vs. ExPASy Swiss-Prot
Match: RS23_ARATH (40S ribosomal protein S2-3 OS=Arabidopsis thaliana GN=RPS2C PE=1 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 7.462e-46
Identity = 57/61 (93.44%), Postives = 59/61 (96.72%), Query Frame = 3 
Query:  342 PVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYLG 524
            PVQKQTRAGQRTRFKAFVVVGD +GHVGLGVKCSKEVATAIRGAIILAKLSV+PVRRGY G
Sbjct:  105 PVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWG 165

HSP 2 Score: 90.1225 bits (222), Expect = 7.462e-46
Identity = 43/53 (81.13%), Postives = 46/53 (86.79%), Query Frame = 2 
Query:  185 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMP 343
            KWVPVTKLGRLV  G I+ +EQIYLHSLP+KEYQIID LIG  LKDEVMKIMP
Sbjct:   53 KWVPVTKLGRLVAAGHIKQIEQIYLHSLPVKEYQIIDMLIGPTLKDEVMKIMP 105
[Close]
BLAST of FC925857 vs. ExPASy Swiss-Prot
Match: RS22_ARATH (40S ribosomal protein S2-2 OS=Arabidopsis thaliana GN=RPS2B PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 7.464e-46
Identity = 57/61 (93.44%), Postives = 59/61 (96.72%), Query Frame = 3 
Query:  342 PVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYLG 524
            PVQKQTRAGQRTRFKAFVVVGD +GHVGLGVKCSKEVATAIRGAIILAKLSV+PVRRGY G
Sbjct:  104 PVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWG 164

HSP 2 Score: 90.1225 bits (222), Expect = 7.464e-46
Identity = 43/53 (81.13%), Postives = 46/53 (86.79%), Query Frame = 2 
Query:  185 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMP 343
            KWVPVTKLGRLV + KI  LEQIYLHSLP+KEYQIID L+G  LKDEVMKIMP
Sbjct:   52 KWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMP 104
[Close]
BLAST of FC925857 vs. ExPASy Swiss-Prot
Match: RS21_ARATH (40S ribosomal protein S2-1 OS=Arabidopsis thaliana GN=RPS2A PE=2 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 7.464e-46
Identity = 57/61 (93.44%), Postives = 59/61 (96.72%), Query Frame = 3 
Query:  342 PVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYLG 524
            PVQKQTRAGQRTRFKAFVVVGD +GHVGLGVKCSKEVATAIRGAIILAKLSV+PVRRGY G
Sbjct:  104 PVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWG 164

HSP 2 Score: 90.1225 bits (222), Expect = 7.464e-46
Identity = 43/53 (81.13%), Postives = 46/53 (86.79%), Query Frame = 2 
Query:  185 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMP 343
            KWVPVTKLGRLV + KI  LEQIYLHSLP+KEYQIID L+G  LKDEVMKIMP
Sbjct:   52 KWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMP 104
[Close]
BLAST of FC925857 vs. ExPASy Swiss-Prot
Match: RS2_DROME (40S ribosomal protein S2 OS=Drosophila melanogaster GN=sop PE=1 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 4.769e-45
Identity = 54/61 (88.52%), Postives = 58/61 (95.08%), Query Frame = 3 
Query:  342 PVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYLG 524
            PVQKQTRAGQRTRFKAFV +GD +GH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGY G
Sbjct:   94 PVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWG 154

HSP 2 Score: 88.9669 bits (219), Expect = 4.769e-45
Identity = 41/53 (77.36%), Postives = 49/53 (92.45%), Query Frame = 2 
Query:  185 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMP 343
            +WVPVTKLGRLVREGKI+SLE+IYL+SLPIKE++IID  +G  LKDEV+KIMP
Sbjct:   42 EWVPVTKLGRLVREGKIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMP 94
[Close]
BLAST of FC925857 vs. ExPASy Swiss-Prot
Match: RS2_ICTPU (40S ribosomal protein S2 OS=Ictalurus punctatus GN=rps2 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.615e-42
Identity = 55/61 (90.16%), Postives = 58/61 (95.08%), Query Frame = 3 
Query:  342 PVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYLG 524
            PVQKQTRAGQRTRFKAFV +GD +GHVGLGVKCSKEVATAIRGAIILAKLS+IPVRRGY G
Sbjct:   96 PVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIIPVRRGYWG 156

HSP 2 Score: 80.8777 bits (198), Expect = 1.615e-42
Identity = 38/53 (71.70%), Postives = 47/53 (88.68%), Query Frame = 2 
Query:  185 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMP 343
            +WVPVTKLGRLV++ KI+SLE+IYL+SLPIKE +IID  +G  LKDEV+KIMP
Sbjct:   44 EWVPVTKLGRLVKDMKIKSLEEIYLYSLPIKESEIIDFFLGSALKDEVLKIMP 96
[Close]
BLAST of FC925857 vs. ExPASy Swiss-Prot
Match: RS2_URECA (40S ribosomal protein S2 OS=Urechis caupo GN=RPS2 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.104e-42
Identity = 55/61 (90.16%), Postives = 58/61 (95.08%), Query Frame = 3 
Query:  342 PVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYLG 524
            PVQKQTRAGQRTRFKAFV +GD +GHVGLGVKCSKEVATAIRGAIILAKLSV+PVRRGY G
Sbjct:   97 PVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWG 157

HSP 2 Score: 80.4925 bits (197), Expect = 2.104e-42
Identity = 37/53 (69.81%), Postives = 47/53 (88.68%), Query Frame = 2 
Query:  185 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMP 343
            +WVPVTKLGRLV++ KI++LE+IYL SLPIKE++IID  +G  LKDEV+KIMP
Sbjct:   45 EWVPVTKLGRLVKDMKIKTLEEIYLFSLPIKEFEIIDFFLGDALKDEVLKIMP 97
[Close]
BLAST of FC925857 vs. ExPASy Swiss-Prot
Match: RS2_RAT (40S ribosomal protein S2 OS=Rattus norvegicus GN=Rps2 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 6.061e-42
Identity = 54/61 (88.52%), Postives = 58/61 (95.08%), Query Frame = 3 
Query:  342 PVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYLG 524
            PVQKQTRAGQRTRFKAFV +GD +GHVGLGVKCSKEVATAIRGAIILAKLS++PVRRGY G
Sbjct:  111 PVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWG 171

HSP 2 Score: 79.337 bits (194), Expect = 6.061e-42
Identity = 37/53 (69.81%), Postives = 46/53 (86.79%), Query Frame = 2 
Query:  185 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMP 343
            +W+PVTKLGRLV++ KI+SLE+IYL SLPIKE +IID  +G  LKDEV+KIMP
Sbjct:   59 EWIPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMP 111
[Close]
BLAST of FC925857 vs. ExPASy Swiss-Prot
Match: RS2_MOUSE (40S ribosomal protein S2 OS=Mus musculus GN=Rps2 PE=1 SV=3)

HSP 1 Score: 112.464 bits (280), Expect = 6.061e-42
Identity = 54/61 (88.52%), Postives = 58/61 (95.08%), Query Frame = 3 
Query:  342 PVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYLG 524
            PVQKQTRAGQRTRFKAFV +GD +GHVGLGVKCSKEVATAIRGAIILAKLS++PVRRGY G
Sbjct:  111 PVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWG 171

HSP 2 Score: 79.337 bits (194), Expect = 6.061e-42
Identity = 37/53 (69.81%), Postives = 46/53 (86.79%), Query Frame = 2 
Query:  185 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMP 343
            +W+PVTKLGRLV++ KI+SLE+IYL SLPIKE +IID  +G  LKDEV+KIMP
Sbjct:   59 EWIPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMP 111
[Close]
BLAST of FC925857 vs. ExPASy Swiss-Prot
Match: RS2_HUMAN (40S ribosomal protein S2 OS=Homo sapiens GN=RPS2 PE=1 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 1.029e-41
Identity = 54/61 (88.52%), Postives = 58/61 (95.08%), Query Frame = 3 
Query:  342 PVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYLG 524
            PVQKQTRAGQRTRFKAFV +GD +GHVGLGVKCSKEVATAIRGAIILAKLS++PVRRGY G
Sbjct:  111 PVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWG 171

HSP 2 Score: 78.5666 bits (192), Expect = 1.029e-41
Identity = 37/53 (69.81%), Postives = 46/53 (86.79%), Query Frame = 2 
Query:  185 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMP 343
            +W+PVTKLGRLV++ KI+SLE+IYL SLPIKE +IID  +G  LKDEV+KIMP
Sbjct:   59 EWMPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMP 111
The following BLAST results are available for this feature:
BLAST of FC925857 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
RS24_ARATH2.385e-4790.1640S ribosomal protein S2-4 OS=Arabidopsis thaliana... [more]
RS23_ARATH7.462e-4693.4440S ribosomal protein S2-3 OS=Arabidopsis thaliana... [more]
RS22_ARATH7.464e-4693.4440S ribosomal protein S2-2 OS=Arabidopsis thaliana... [more]
RS21_ARATH7.464e-4693.4440S ribosomal protein S2-1 OS=Arabidopsis thaliana... [more]
RS2_DROME4.769e-4588.5240S ribosomal protein S2 OS=Drosophila melanogaste... [more]
RS2_ICTPU1.615e-4290.1640S ribosomal protein S2 OS=Ictalurus punctatus GN... [more]
RS2_URECA2.104e-4290.1640S ribosomal protein S2 OS=Urechis caupo GN=RPS2 ... [more]
RS2_RAT6.061e-4288.5240S ribosomal protein S2 OS=Rattus norvegicus GN=R... [more]
RS2_MOUSE6.061e-4288.5240S ribosomal protein S2 OS=Mus musculus GN=Rps2 P... [more]
RS2_HUMAN1.029e-4188.5240S ribosomal protein S2 OS=Homo sapiens GN=RPS2 P... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YP09FM1 TF Citrus clementina cDNA clone KN0AAP3YP09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925857 ID=FC925857; Name=FC925857; organism=Citrus clementina; type=EST; length=541bp
CTCGCATTTTTCTTTCTCCCAAAGCCCAAACCCTAGCTTCAAACCCTAAA
CCCACAAGAACAAAACCATGGCTGAACGAGGTGGCGAGTGCGGTGCATTC
GGACGCGGCTTCGGCCGTGGTGGGCGGGGCGACCGTGGAGGCCCACGTGG
CCGTCGCCGCGCTGGACGCAGAGAGGAAGAAGAGAAGTGGGTCCCAGTCA
CGAAACTCGGCCGTCTGGTGAGAGAAGGCAAGATCAGGAGCCTCGAGCAA
ATCTACCTCCACTCGCTCCCAATCAAGGAGTATCAAATCATCGACACGCT
TATCGGCCACAAATTGAAGGACGAGGTCATGAAGATCATGCCCGGTGCAG
AAACAGACACGTGCCGGTCAGAGGACGAGGTTCAAGGCCTTCGTCGTCGT
CGGTGACACGGACGGCCACGTGGGTCTTGGCGTTAAGTGCTCCAAAGAGG
TTGCCACTGCCATCCGTGGCGCTATCATATTGGCGAAGCTGTCGGTGATT
CCGGTGAGAAGGGGTTACCTGGGGTAACAAGATCGGGAGGC
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