FC925861

Overview
NameFC925861
Unique NameFC925861
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length674
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925861 vs. ExPASy Swiss-Prot
Match: P2_ARATH (Probable NADP-dependent oxidoreductase P2 OS=Arabidopsis thaliana GN=P2 PE=2 SV=2)

HSP 1 Score: 296.975 bits (759), Expect = 6.063e-80
Identity = 145/207 (70.05%), Postives = 173/207 (83.57%), Query Frame = 1
Query:   58 SNKRVILSNYVTGFPKESDMKITSGSIKLKVAEGSKDTVLLKNLYLSCDPYMRWRMSKLDRPS-FVDSFHPGEPINGYGVAKVLDSTHPNYAKDDLVWGFTGWEEYSLVTA-PQILIKIQHTDVPLSYYTGILGMPGVTAYAGLYEVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKVDLLKNKFGFDDAFNYQE 672
            +NK+VI  ++V+GFPKESD   T+ +++L+V EGSK +VL+KNLYLSCDPYMR RM K D  S    ++ PG+PI GYGV++V++S HP+Y K DL+WG  GWEEYS++T    +  KIQHTDVPLSYYTG+LGMPG+TAYAG YEVCSPKKGE VYVSAASGAVGQLVGQFAK+ GCYVVGSAGSKEKVDLLK KFGFDDAFNY+E
Sbjct:    3 TNKQVIFKDHVSGFPKESDFNFTTTTVELRVPEGSK-SVLVKNLYLSCDPYMRSRMGKPDPSSALAQAYAPGKPIYGYGVSRVIESGHPDYKKGDLLWGIVGWEEYSVITPMAHMHFKIQHTDVPLSYYTGLLGMPGMTAYAGFYEVCSPKKGETVYVSAASGAVGQLVGQFAKMMGCYVVGSAGSKEKVDLLKTKFGFDDAFNYKE 208          
BLAST of FC925861 vs. ExPASy Swiss-Prot
Match: P1_ARATH (Probable NADP-dependent oxidoreductase P1 OS=Arabidopsis thaliana GN=P1 PE=1 SV=1)

HSP 1 Score: 287.73 bits (735), Expect = 3.678e-77
Identity = 139/208 (66.83%), Postives = 170/208 (81.73%), Query Frame = 1
Query:   58 SNKRVILSNYVTGFPKESDMKITSGSIKLKVAEGSKDTVLLKNLYLSCDPYMRWRMSKLD--RPSFVDSFHPGEPINGYGVAKVLDSTHPNYAKDDLVWGFTGWEEYSLVTA-PQILIKIQHTDVPLSYYTGILGMPGVTAYAGLYEVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKVDLLKNKFGFDDAFNYQE 672
            +NK+VIL +YV+GFP ESD   T+ +++L+V EG+ ++VL+KNLYLSCDPYMR RM K D    +   ++ PG+PI GYGV+++++S HP+Y K DL+WG   WEEYS++T       KIQHTDVPLSYYTG+LGMPG+TAYAG YEVCSPK+GE VYVSAASGAVGQLVGQ AK+ GCYVVGSAGSKEKVDLLK KFGFDDAFNY+E
Sbjct:    4 TNKQVILKDYVSGFPTESDFDFTTTTVELRVPEGT-NSVLVKNLYLSCDPYMRIRMGKPDPSTAALAQAYTPGQPIQGYGVSRIIESGHPDYKKGDLLWGIVAWEEYSVITPMTHAHFKIQHTDVPLSYYTGLLGMPGMTAYAGFYEVCSPKEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTKFGFDDAFNYKE 210          
BLAST of FC925861 vs. ExPASy Swiss-Prot
Match: YFMJ_BACSU (Putative NADP-dependent oxidoreductase yfmJ OS=Bacillus subtilis GN=yfmJ PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 6.568e-34
Identity = 88/205 (42.93%), Postives = 121/205 (59.02%), Query Frame = 1
Query:   58 SNKRVILSNYVTGFPKESDMKITSGSIKLKVAEGSKDTVLLKNLYLSCDPYMRWRMSKLDRPSFVDSFHPGEPINGYGVAKVL-DSTHPNYAKDDLVWGFTGWEEYSLVTAPQILIKIQHTDVPLSYYTGILGMPGVTAYAGLYEVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKVDLLKNKFGFDDAFNYQ 669
            S +++ L+    G P   D +  +    + V E  +  VL+K LY+S DPYMR RM   D  S+V+ F   + ++G  +A+V+ D  H    K D+V G   W+E+S V+    L KI  +  P S Y GILGM G+TAY GL ++  PK+GE V VS A+GAVG  VGQ AK+ G  VVG AGS EK+D LK +  FD+A NY+
Sbjct:    4 SQQQIQLARRPQGIPVHEDFRFET----IPVPEPKQGEVLVKTLYVSVDPYMRGRMQ--DTKSYVEPFALDKALSGGVIAEVVSDGNH--LKKGDIVIGNLSWQEFSAVSE-SALRKIDTSLAPASAYLGILGMTGLTAYFGLLDIGRPKEGETVVVSGAAGAVGSTVGQIAKIKGARVVGIAGSDEKIDYLKQELQFDEAINYK 199          
BLAST of FC925861 vs. ExPASy Swiss-Prot
Match: PTGR1_RABIT (Prostaglandin reductase 1 OS=Oryctolagus cuniculus GN=PTGR1 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.257e-33
Identity = 85/207 (41.06%), Postives = 121/207 (58.45%), Query Frame = 1
Query:   55 VSNKRVILSNYVTGFPKESDMKITSGSIKLKVAEGSKDTVLLKNLYLSCDPYMRWRMSKLDRPSFVDSFHPGEPINGYGVAKVLDSTHPNYAKDDLVWGFTGWEEYSLVTAPQI--LIKIQHTDVPLSYYTGILGMPGVTAYAGLYEVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKVDLLKNKFGFDDAFNYQ 669
            V  K   L  +  G P +SD ++ +    +++   +   VLL+ L+LS DPYMR    +L           G+ + G  VA+V++S +P +    LV   +GW  +S+    Q+  L+      +PLS   G +GMPG+TAY GL E+C  K G+ V V+AA+GAVG +VGQ AK+ GC VVG+AGS+EKVD LK K GFD AFNY+
Sbjct:    2 VRAKNWTLKKHFHGHPTDSDFELKT----VELPPLNNGEVLLEALFLSVDPYMRLGSKRLKE---------GDTMMGQQVARVVESKNPAWPVGTLVLAHSGWASHSISDGQQLEKLLTEWPDTLPLSLALGTVGMPGITAYFGLLEICGAKSGDTVLVNAAAGAVGAVVGQIAKIKGCRVVGAAGSEEKVDYLK-KIGFDFAFNYK 194          
BLAST of FC925861 vs. ExPASy Swiss-Prot
Match: YNCB_ECOLI (Putative NADP-dependent oxidoreductase yncB OS=Escherichia coli (strain K12) GN=yncB PE=3 SV=3)

HSP 1 Score: 139.813 bits (351), Expect = 1.239e-32
Identity = 80/202 (39.60%), Postives = 114/202 (56.44%), Query Frame = 1
Query:   46 QEAVSNKRVILSNYVTGFPKESDMKITSGSIKLKVAEGSKDTVLLKNLYLSCDPYMRWRMSKLDRPSFVDSFHPGEPINGYGVAKVLDSTHPNYAKDDLVWGFTGWEEYSLVTAPQILIKIQHTDVPLSYYTGILGMPGVTAYAGLYEVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKVDLLKNKFGFD 651
            Q+   N+R +L++   G P   + ++        VA   +  VLL+ +YLS DPYMR RMS  D PS+      G  + G  V++V++S HP+Y   D V G++GW++Y + +   ++    H   P S+  G+LGMPG TAY GL ++  PK+GE + V+AA+G VG  VGQ  KL GC VVG AG  EK        GFD
Sbjct:    3 QQKQRNRRWVLASRPHGAPVPENFRLEEDD----VATPGEGQVLLRTVYLSLDPYMRGRMS--DEPSYSPPVDIGGVMVGGTVSRVVESNHPDYQSGDWVLGYSGWQDYDISSGDDLVKLGDHPQNP-SWSLGVLGMPGFTAYMGLLDIGQPKEGETLVVAAATGPVGATVGQIGKLKGCRVVGVAGGAEKCRHATEVLGFD 197          
BLAST of FC925861 vs. ExPASy Swiss-Prot
Match: YKM8_SCHPO (Zinc-type alcohol dehydrogenase-like protein PB24D3.08c OS=Schizosaccharomyces pombe GN=SPAPB24D3.08c PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.604e-32
Identity = 88/215 (40.93%), Postives = 120/215 (55.81%), Query Frame = 1
Query:   55 VSNKRVILSNYV---TGFPKESD-MKITSGSIKLKVAEGSKDT-VLLKNLYLSCDPYMRWRMSKLDRPSFVDSFHPGEPINGYGVAKVLDSTHPNYAKDDLVWGFTGWEEYSLVTAPQILIKIQHTD----VPLSYYTGILGMPGVTAYAGLYEVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKVDLLKNKFGFDDAFNYQE 672
            VSN  VI+  Y+    G+P   + +        L+ A+  ++T VLLKN+Y S DPY+R RM      S++     G+P     VAKV+ ST   Y     V   +GWEEY+ V+  Q L  +Q  +    +PL  + G LGMP  TAY GL  +  PK GE +Y+SAASGAVGQ+ GQ AK  G +VVGS GS EK  +  +  G+D  FNY++
Sbjct:    2 VSNNAVIIKKYLDSTAGYPVIGEHLAFEKREFDLENAQVDEETPVLLKNIYTSVDPYLRMRMQSPKHASYIPPLELGKPFYNSTVAKVVKSTLDQYKPGMDVVFVSGWEEYTFVSK-QALGFLQPINNPYKLPLIDFVGSLGMPSQTAYCGLKHIGKPKAGETIYISAASGAVGQMAGQLAKAMGLHVVGSVGSDEKFKICLDS-GYDSVFNYKK 214          
BLAST of FC925861 vs. ExPASy Swiss-Prot
Match: PTGR1_MOUSE (Prostaglandin reductase 1 OS=Mus musculus GN=Ptgr1 PE=2 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 3.051e-31
Identity = 89/210 (42.38%), Postives = 118/210 (56.19%), Query Frame = 1
Query:   55 VSNKRVILSNYVTGFPKESDMKITSGSIKLKVAEG---SKDTVLLKNLYLSCDPYMRWRMSKLDRPSFVDSFHPGEPINGYGVAKVLDSTHPNYAKDDLVWGFTGWEEYSLVTAPQIL-IKIQHTD-VPLSYYTGILGMPGVTAYAGLYEVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKVDLLKNKFGFDDAFNYQ 669
            V  K   L  +  GFP       T G+ +LK  E    +   VLL+ L+LS DPYMR    KL           G+ + G  VA+V++S +  + K  +V    GW  +S+     +  + ++  D +PLS   G +GMPG+TAY GL ++C  K GE V VSAA+GAVG +VGQ AKL GC VVG+AGS EKV  LK K GFD AFNY+
Sbjct:    2 VQAKSWTLKKHFEGFP-------TDGNFELKTTELPPLNNGEVLLEALFLSVDPYMRVAAKKLKE---------GDRMMGEQVARVVESKNSAFPKGTIVAALLGWTSHSISDGNGLTKLPVEWPDKLPLSLALGTVGMPGLTAYFGLLDICGVKGGETVMVSAAAGAVGSVVGQIAKLKGCKVVGTAGSDEKVAYLK-KLGFDVAFNYK 194          
BLAST of FC925861 vs. ExPASy Swiss-Prot
Match: PTGR1_HUMAN (Prostaglandin reductase 1 OS=Homo sapiens GN=PTGR1 PE=1 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 5.754e-30
Identity = 84/208 (40.38%), Postives = 114/208 (54.81%), Query Frame = 1
Query:   55 VSNKRVILSNYVTGFPKESDMKITSGSIK-LKVAEGSKDTVLLKNLYLSCDPYMRWRMSKLDRPSFVDSFHPGEPINGYGVAKVLDSTHPNYAKDDLVWGFTGWEEYSLVTAPQI--LIKIQHTDVPLSYYTGILGMPGVTAYAGLYEVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKVDLLKNKFGFDDAFNYQ 669
            V  K   L  +  G+P  SD ++ +  +  LK  E     VLL+ L+L+ DPYMR    +L           G+ + G  VAKV++S +    K  +V    GW  +S+     +  L+      +PLS   G +GMPG+TAY GL E+C  K GE V V+AA+GAVG +VGQ AKL GC VVG+ GS EKV  L+ K GFD  FNY+
Sbjct:    2 VRTKTWTLKKHFVGYPTNSDFELKTAELPPLKNGE-----VLLEALFLTVDPYMRVAAKRLKE---------GDTMMGQQVAKVVESKNVALPKGTIVLASPGWTTHSISDGKDLEKLLTEWPDTIPLSLALGTVGMPGLTAYFGLLEICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAVGSDEKVAYLQ-KLGFDVVFNYK 194          
BLAST of FC925861 vs. ExPASy Swiss-Prot
Match: PTGR1_PIG (Prostaglandin reductase 1 OS=Sus scrofa GN=PTGR1 PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.674e-29
Identity = 84/208 (40.38%), Postives = 117/208 (56.25%), Query Frame = 1
Query:   55 VSNKRVILSNYVTGFPKESDMKITSGSIK-LKVAEGSKDTVLLKNLYLSCDPYMRWRMSKLDRPSFVDSFHPGEPINGYGVAKVLDSTHPNYAKDDLVWGFTGWEEYSLVTAPQI--LIKIQHTDVPLSYYTGILGMPGVTAYAGLYEVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKVDLLKNKFGFDDAFNYQ 669
            V  K   L  +  G+P  S+ ++ +  +  LK  E     VLL+ L+L+ DPYMR    KL           G+ + G  VA+V++S +  +    +V    GW  +S+     +  L+      +PLS   G +GMPG+TAY GL ++C  K GE V V+AA+GAVG +VGQ AKL GC VVG+AGS EKV  LK K+GFD AFNY+
Sbjct:    2 VRAKSWTLKKHFVGYPTPSNFELKTVELPPLKNGE-----VLLEALFLTVDPYMRIAARKLKE---------GDMMMGEQVARVIESKNAAFPTGTIVVALLGWTTHSISDGKNLERLLAEWPDTLPLSLTLGTVGMPGLTAYFGLLDICGLKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVACLK-KYGFDVAFNYK 194          
BLAST of FC925861 vs. ExPASy Swiss-Prot
Match: PTGR1_RAT (Prostaglandin reductase 1 OS=Rattus norvegicus GN=Ptgr1 PE=2 SV=3)

HSP 1 Score: 129.028 bits (323), Expect = 2.187e-29
Identity = 83/207 (40.10%), Postives = 117/207 (56.52%), Query Frame = 1
Query:   55 VSNKRVILSNYVTGFPKESDMKITSGSIKLKVAEGSKDTVLLKNLYLSCDPYMRWRMSKLDRPSFVDSFHPGEPINGYGVAKVLDSTHPNYAKDDLVWGFTGWEEYSLVTAPQIL-IKIQHTD-VPLSYYTGILGMPGVTAYAGLYEVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKVDLLKNKFGFDDAFNYQ 669
            V  K   L  +  GFP +S+ ++ +     ++   +   VLL+ L+LS DPYMR    KL           G+ + G  VA+V++S +  +    +V    GW  +S+     +  +  +  D +PLS   G +GMPG+TAY GL ++C  K GE V V+AA+GAVG +VGQ AKL GC VVG+AGS EKV  LK K GFD AFNY+
Sbjct:    2 VQAKTWTLKKHFEGFPTDSNFELRT----TELPPLNNGEVLLEALFLSVDPYMRVAAKKLKE---------GDSMMGEQVARVVESKNSAFPTGTIVVALLGWTSHSISDGNGLRKLPAEWPDKLPLSLALGTVGMPGLTAYFGLLDICGLKGGETVLVNAAAGAVGSVVGQIAKLKGCKVVGTAGSDEKVAYLK-KLGFDVAFNYK 194          
The following BLAST results are available for this feature:
BLAST of FC925861 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
P2_ARATH6.063e-8070.05Probable NADP-dependent oxidoreductase P2 OS=Arabi... [more]
P1_ARATH3.678e-7766.83Probable NADP-dependent oxidoreductase P1 OS=Arabi... [more]
YFMJ_BACSU6.568e-3442.93Putative NADP-dependent oxidoreductase yfmJ OS=Bac... [more]
PTGR1_RABIT4.257e-3341.06Prostaglandin reductase 1 OS=Oryctolagus cuniculus... [more]
YNCB_ECOLI1.239e-3239.60Putative NADP-dependent oxidoreductase yncB OS=Esc... [more]
YKM8_SCHPO3.604e-3240.93Zinc-type alcohol dehydrogenase-like protein PB24D... [more]
PTGR1_MOUSE3.051e-3142.38Prostaglandin reductase 1 OS=Mus musculus GN=Ptgr1... [more]
PTGR1_HUMAN5.754e-3040.38Prostaglandin reductase 1 OS=Homo sapiens GN=PTGR1... [more]
PTGR1_PIG1.674e-2940.38Prostaglandin reductase 1 OS=Sus scrofa GN=PTGR1 P... [more]
PTGR1_RAT2.187e-2940.10Prostaglandin reductase 1 OS=Rattus norvegicus GN=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YP14FM1 TF Citrus clementina cDNA clone KN0AAP3YP14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925861 ID=FC925861; Name=FC925861; organism=Citrus clementina; type=EST; length=674bp
ATTTTCCTGCCCTAGAAAAAAAACTGAGAAACAATGGCGGCTGAACAAGA
AGCTGTGAGCAATAAGCGGGTGATTCTGAGCAACTATGTGACAGGTTTTC
CAAAAGAATCAGACATGAAGATAACAAGTGGATCAATAAAGCTGAAGGTA
GCAGAGGGTTCAAAAGACACAGTGCTTTTGAAGAATCTTTATCTTTCTTG
TGATCCTTACATGCGATGGCGTATGAGCAAGCTTGATAGACCTTCTTTTG
TTGATTCATTCCATCCTGGTGAGCCTATAAATGGTTATGGGGTAGCTAAA
GTTTTGGATTCTACACATCCAAATTATGCAAAAGATGACTTGGTTTGGGG
CTTTACCGGGTGGGAGGAGTACAGTCTCGTTACAGCCCCACAGATTTTGA
TTAAAATTCAGCATACAGATGTGCCCCTTTCATACTATACTGGAATCCTT
GGTATGCCTGGTGTGACCGCATACGCTGGTTTATACGAAGTTTGCTCTCC
GAAGAAAGGTGAGTATGTCTATGTATCTGCAGCATCTGGAGCTGTTGGTC
AGCTTGTTGGCCAATTTGCAAAATTGGCTGGTTGCTATGTTGTTGGAAGT
GCTGGAAGCAAAGAAAAGGTCGATTTGTTGAAGAACAAGTTTGGATTTGA
TGATGCTTTTAACTACCAGGAAGA
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