FC925864

Overview
NameFC925864
Unique NameFC925864
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length672
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925864 vs. ExPASy Swiss-Prot
Match: RPG1_ARATH (Protein RUPTURED POLLEN GRAIN 1 OS=Arabidopsis thaliana GN=RPG1 PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.753e-40
Identity = 83/185 (44.86%), Postives = 122/185 (65.95%), Query Frame = 1
Query:   49 VGIIGNVISLLVFASPIKTFWQIVKKKSTESYKGVPYITTLMSTCLWTFYG--VMKPGGLVVATVNGAGAALQFIYVSLYLIYAPKDKKVKTAKL-VAILDVGFLGAVIAITLLAMHGN-LRLTFVGILCAALTIGMYASPLAVMTTVIRTKSVKYMPFLLSFFLFLNAGVWSVYSVLVK-DIYI 588
            +G+IGNVIS  +FA+P KTFW+I KKKS E +  VPY+ T+M+  LW FYG  V+    ++V+T+NG G  ++  YV +YL+Y    K  +   L    L+V  + A+I ITL A+ G+ ++ TFVG++C    I MY +P   +  V++TKSV+YMPFLLS   F+NAG+W+ YS++ K D Y+
Sbjct:   11 IGVIGNVISFGLFAAPAKTFWRIFKKKSVEEFSYVPYVATVMNCMLWVFYGLPVVHKDSILVSTINGVGLVIELFYVGVYLMYCGHKKNHRRNILGFLALEVILVVAIILITLFALKGDFVKQTFVGVICDVFNIAMYGAPSLAIIKVVKTKSVEYMPFLLSLVCFVNAGIWTTYSLIFKIDYYV 195          
BLAST of FC925864 vs. ExPASy Swiss-Prot
Match: R1AP1_XENLA (RAG1-activating protein 1 homolog OS=Xenopus laevis GN=rag1ap1 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.518e-22
Identity = 63/176 (35.80%), Postives = 104/176 (59.09%), Query Frame = 1
Query:   67 VISLLVFASPIKTFWQIVKKKSTESYKGVPYITTLMSTCLWTFYGVMKPGGLVVATVNGAGAALQFIYVSLYLIYAPKDKKVKTAKLVAILDVGFLGAVIAITLLAMHGNLRLTFVGILCAALTIGMYASPLAVMTTVIRTKSVKYMPFLLSFFLFLNAGVWSVYSVLVKDIYIGV 594
            V +L +F+S +     +V ++S E+ + +P++TT ++   W +YG +K  G ++  VN  GA+LQ +Y+  YL+Y+P+ + V +  LV+ L V  LG     TL  +  N RL  +G+ C+  TI MY SPLA +  +IR+KS K + F L+   FL +  W +Y ++  D+YI V
Sbjct:   13 VFTLGMFSSGLSDLRVMVAQRSVENIQYLPFLTTDLNNLGWFYYGYLKGDGTLMI-VNVIGASLQSLYMGAYLLYSPERRYVGSQVLVS-LGVLLLGYCY-FTLWILDLNSRLNQLGLFCSVFTISMYLSPLADLAQIIRSKSTKCLSFPLTVATFLTSSSWVLYGLVQSDLYITV 185          
BLAST of FC925864 vs. ExPASy Swiss-Prot
Match: R1AP1_XENTR (RAG1-activating protein 1 homolog OS=Xenopus tropicalis GN=rag1ap1 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.421e-20
Identity = 62/176 (35.23%), Postives = 103/176 (58.52%), Query Frame = 1
Query:   67 VISLLVFASPIKTFWQIVKKKSTESYKGVPYITTLMSTCLWTFYGVMKPGGLVVATVNGAGAALQFIYVSLYLIYAPKDKKVKTAKLVAILDVGFLGAVIAITLLAMHGNLRLTFVGILCAALTIGMYASPLAVMTTVIRTKSVKYMPFLLSFFLFLNAGVWSVYSVLVKDIYIGV 594
            V +L +F+S +     +V K+S E+ + +P++TT ++   W +YG +K  G ++  VN  GA+LQ +Y++ Y++Y+ + + V +  LV+ L V FL A    TL     N RL  +G+ C+  TI MY SPLA +  +I++KS K + F L+   FL +  W +Y  +  D+YI V
Sbjct:   13 VFTLGMFSSGLSDLRVMVAKRSVENIQFLPFLTTDLNNLGWFYYGYLKGDGTLII-VNLIGASLQTLYMAAYILYSLERRYVVSQVLVS-LGVLFL-AHCYFTLWTPDINSRLNQLGLFCSIFTISMYLSPLADLAQIIKSKSTKCLSFPLTVATFLTSTSWVLYGWVQSDLYITV 185          
BLAST of FC925864 vs. ExPASy Swiss-Prot
Match: R1AP1_MOUSE (RAG1-activating protein 1 OS=Mus musculus GN=Rag1ap1 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.571e-19
Identity = 59/196 (30.10%), Postives = 105/196 (53.57%), Query Frame = 1
Query:   67 VISLLVFASPIKTFWQIVKKKSTESYKGVPYITTLMSTCLWTFYGVMKPGGLVVATVNGAGAALQFIYVSLYLIYAPKDKKV--KTAKLVAILDVGFLGAVIAITLLAMHGNLRLTFVGILCAALTIGMYASPLAVMTTVIRTKSVKYMPFLLSFFLFLNAGVWSVYSVLVKDIYIGVFTLIKTISGAKCRRVRLG 648
            + +L +F++ +     + + +S ++ + +P++TT ++   W  YGV+K  G ++  VN  GA LQ +Y+  YL Y+P+   V  +TA L+A+L +G+        LL      RL  +G+ C+  TI MY SPLA +  +++TKS + + F L+      +  WS+Y   ++D YI     +  + G     +RLG
Sbjct:   17 LFTLGMFSTGLSDLRHMQRTRSVDNIQFLPFLTTDVNNLSWLSYGVLKGDGTLII-VNSVGAVLQTLYILAYLHYSPQKHGVLLQTATLLAVLLLGYG----YFWLLVPDLEARLQQLGLFCSVFTISMYLSPLADLAKIVQTKSTQRLSFSLTIATLFCSASWSIYGFRLRDPYI----TVPNLPGILTSLIRLG 203          
BLAST of FC925864 vs. ExPASy Swiss-Prot
Match: R1AP1_HUMAN (RAG1-activating protein 1 OS=Homo sapiens GN=RAG1AP1 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.679e-19
Identity = 57/178 (32.02%), Postives = 99/178 (55.62%), Query Frame = 1
Query:   67 VISLLVFASPIKTFWQIVKKKSTESYKGVPYITTLMSTCLWTFYGVMKPGGLVVATVNGAGAALQFIYVSLYLIYAPKDKKV--KTAKLVAILDVGFLGAVIAITLLAMHGNLRLTFVGILCAALTIGMYASPLAVMTTVIRTKSVKYMPFLLSFFLFLNAGVWSVYSVLVKDIYIGV 594
            V +L +F++ +     +   +S ++ + +P++TT ++   W  YG +K  G+++  VN  GAALQ +Y+  YL Y P+ + V  +TA L+ +L +G+        LL  +   RL  +G+ C+  TI MY SPLA +  VI+TKS + + + L+    L +  W +Y   ++D YI V
Sbjct:   17 VFTLGMFSAGLSDLRHMRMTRSVDNVQFLPFLTTEVNNLGWLSYGALKGDGILIV-VNTVGAALQTLYILAYLHYCPRKRVVLLQTATLLGVLLLGYG----YFWLLVPNPEARLQQLGLFCSVFTISMYLSPLADLAKVIQTKSTQCLSYPLTIATLLTSASWCLYGFRLRDPYIMV 189          
BLAST of FC925864 vs. ExPASy Swiss-Prot
Match: R1AP1_DANRE (RAG1-activating protein 1 homolog OS=Danio rerio GN=rag1ap1 PE=2 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 4.570e-19
Identity = 58/171 (33.92%), Postives = 97/171 (56.73%), Query Frame = 1
Query:  121 KKKSTESYKGV---PYITTLMSTCLWTFYGVMKPGGLVVATVNGAGAALQFIYVSLYLIYAPKDKKVKTAKL--VAILDVGFLGAVIAITLLAMHGNLRLTFVGILCAALTIGMYASPLAVMTTVIRTKSVKYMPFLLSFFLFLNAGVWSVYSVLVKDIYI------GVFT 600
            K K+T+S   V   P++TT ++   W +YG++K  G V+  VN  GA LQ +Y++ Y  Y  + ++V T  L  V++L V +    +  +L+   G  +L+ +G+ C+  TI MY SPLA +  ++RTKSV+ + F L+   F  +  W++Y + + D YI      G+FT
Sbjct:   28 KMKATQSADNVQFLPFLTTCLNNLGWLYYGLLKGDGTVIF-VNIIGAFLQTVYIATYCHYTKEKRRVYTQTLLMVSVLCVAW----VYFSLVISPGEAQLSQLGLTCSVFTISMYLSPLADLLDIMRTKSVERLSFSLTVATFFTSTSWTLYGLQLGDYYIMVPNTPGIFT 193          
BLAST of FC925864 vs. ExPASy Swiss-Prot
Match: R1AP1_PAPAN (RAG1-activating protein 1 OS=Papio anubis GN=RAG1AP1 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.869e-18
Identity = 56/178 (31.46%), Postives = 97/178 (54.49%), Query Frame = 1
Query:   67 VISLLVFASPIKTFWQIVKKKSTESYKGVPYITTLMSTCLWTFYGVMKPGGLVVATVNGAGAALQFIYVSLYLIYAPKDKKV--KTAKLVAILDVGFLGAVIAITLLAMHGNLRLTFVGILCAALTIGMYASPLAVMTTVIRTKSVKYMPFLLSFFLFLNAGVWSVYSVLVKDIYIGV 594
            V +L +F++ +     +   +S ++ + +P++TT ++   W  YG +K G  ++  VN  GAALQ +Y+  YL Y P+ + V  +TA L+ +L +G+        LL  +   RL  +G+ C+  TI MY SPLA +  VI+TKS + + + L+    L +  W +Y   ++  YI V
Sbjct:   17 VFTLGMFSAGLSDLRHMRMTRSVDNVQFLPFLTTEVNNLGWLSYGALK-GDRILIVVNTVGAALQTLYILAYLHYCPRKRVVLLQTATLLGVLLLGYG----YFWLLVPNPEARLQLLGLFCSVFTISMYLSPLADLAKVIQTKSTQCLSYPLTIATVLTSASWCLYGFRLRVPYIMV 189          
BLAST of FC925864 vs. ExPASy Swiss-Prot
Match: R1AP1_DROPS (RAG1-activating protein 1 homolog OS=Drosophila pseudoobscura pseudoobscura GN=slv PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.389e-14
Identity = 48/159 (30.19%), Postives = 79/159 (49.69%), Query Frame = 1
Query:  118 VKKKSTESYKGVPYITTLMSTCLWTFYGVMKPGGLVVATVNGAGAALQFIYVSLYLIYAPKDKKVKTAKLVAILDVGFLGAVIAITLLAMHGNLRLTFVGILCAALTIGMYASPLAVMTTVIRTKSVKYMPFLLSFFLFLNAGVWSVYSVLVKDIYIGV 594
            ++KKST    GVP+I   +S   W  YGV+     +V  VN  G+ L  IY  +Y ++   +K+    +   +L V     V+    LA   +  +   GI C  +T+  +A+PLA +  VIR K+ + +P  L    FL +  W +Y +L+ D +I +
Sbjct:   32 IQKKSTGDSSGVPFICGFLSCSFWLRYGVLTEEQSIVL-VNIIGSTLFLIYTLIYYVFTV-NKRAFVRQFAFVLAVLIAVVVVYTNRLADQRDEMIRITGIFCCIVTVCFFAAPLATLLHVIRAKNSESLPLPLIATSFLVSLQWLIYGILISDSFIQI 188          
BLAST of FC925864 vs. ExPASy Swiss-Prot
Match: R1AP1_DROME (RAG1-activating protein 1 homolog OS=Drosophila melanogaster GN=slv PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.172e-12
Identity = 45/164 (27.44%), Postives = 79/164 (48.17%), Query Frame = 1
Query:  118 VKKKSTESYKGVPYITTLMSTCLWTFYGVMKPGGLVVATVNGAGAALQFIYVSLYLIYAPKDKKVKTAKLVAILDVGFLGAVIAITL-----LAMHGNLRLTFVGILCAALTIGMYASPLAVMTTVIRTKSVKYMPFLLSFFLFLNAGVWSVYSVLVKDIYIGV 594
            ++KKST    GVP+I   +S   W  YGV+     +V  VN  G+ L  +Y  +Y ++          K   +   GF+  V+ + +     L    +  +   GI+C  +T+  +A+PLA +  VIR K+ + +P  L    F+ +  W +Y +L+ D +I +
Sbjct:   33 IQKKSTGDSSGVPFICGFLSCSFWLRYGVLTNEQSIVL-VNIIGSTLFLVYTLIYYVFTVN-------KRACVKQFGFVLTVLVVVIVYTNRLEDQRDRMIHVTGIVCCIVTVCFFAAPLASLLHVIRAKNSESLPLPLIATSFVVSLQWLIYGILISDSFIQI 188          
BLAST of FC925864 vs. ExPASy Swiss-Prot
Match: R1AP1_CAEBR (RAG1-activating protein 1 homolog OS=Caenorhabditis briggsae GN=CBG13500 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.229e-12
Identity = 53/203 (26.11%), Postives = 93/203 (45.81%), Query Frame = 1
Query:   49 VGIIGNVISLLVFASPIKTFW-------QIVKKKSTESYKGVPYITTLMSTCLWTFYGVMKPGGLVVATVNGAGAALQFIYVSLYLIYAPKDKKVKTAKLVAILDVGFLGAVIAITLLAMHGNLRLTFVGILCAALTIGMYASPLAVMTTVIRTKSVKYMPFLLSFFLFLNAGVWSVYSVLVKDIY------IGVFTLIKTIS 618
            + ++  V+S+    + I  F+       QI ++ +     GVP++  ++    W  YG++K    ++  VN  G     +Y   +LIY+   KK  T +L+ +      G V+ I          L ++GI+C    I  + +PLA +  V+R + V  +P  +    FL +  W +Y  LV+DIY      IG+F  I  +S
Sbjct:    2 IEVVLQVLSISAITTTIALFFCGIPICMQIRRQGAVGDISGVPFLMGVLGGSFWLRYGLLKMDYTMII-VNVVGVFCMAVYCIFFLIYS-LPKKTFTCQLILVTST-ITGMVVWIAFKP-----NLDYLGIICMTFNIMNFGAPLAGLGVVLRNREVSTLPLPMCVANFLVSSQWCLYGNLVQDIYIIIPNGIGMFLAIVQLS 196          
The following BLAST results are available for this feature:
BLAST of FC925864 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
RPG1_ARATH2.753e-4044.86Protein RUPTURED POLLEN GRAIN 1 OS=Arabidopsis tha... [more]
R1AP1_XENLA1.518e-2235.80RAG1-activating protein 1 homolog OS=Xenopus laevi... [more]
R1AP1_XENTR1.421e-2035.23RAG1-activating protein 1 homolog OS=Xenopus tropi... [more]
R1AP1_MOUSE1.571e-1930.10RAG1-activating protein 1 OS=Mus musculus GN=Rag1a... [more]
R1AP1_HUMAN2.679e-1932.02RAG1-activating protein 1 OS=Homo sapiens GN=RAG1A... [more]
R1AP1_DANRE4.570e-1933.92RAG1-activating protein 1 homolog OS=Danio rerio G... [more]
R1AP1_PAPAN3.869e-1831.46RAG1-activating protein 1 OS=Papio anubis GN=RAG1A... [more]
R1AP1_DROPS3.389e-1430.19RAG1-activating protein 1 homolog OS=Drosophila ps... [more]
R1AP1_DROME3.172e-1227.44RAG1-activating protein 1 homolog OS=Drosophila me... [more]
R1AP1_CAEBR9.229e-1226.11RAG1-activating protein 1 homolog OS=Caenorhabditi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP3YP18FM1 TF Citrus clementina cDNA clone KN0AAP3YP18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925864 ID=FC925864; Name=FC925864; organism=Citrus clementina; type=EST; length=672bp
AGCACTTTATTCTCTCCTAGTTCTTCCATGGCTAGCTTAAGCTTCTTCGT
CGGTATTATTGGCAATGTAATTTCGCTATTGGTTTTTGCTTCTCCCATAA
AAACATTTTGGCAAATTGTGAAGAAGAAATCTACGGAGAGTTACAAGGGG
GTTCCATACATAACGACTCTAATGAGCACATGTTTGTGGACATTCTATGG
TGTTATGAAGCCAGGTGGTTTGGTTGTTGCCACAGTCAATGGGGCCGGTG
CCGCTTTGCAGTTCATTTATGTTTCTCTCTATCTCATTTATGCTCCCAAG
GATAAGAAGGTTAAGACGGCGAAACTTGTAGCAATATTAGATGTTGGCTT
CCTCGGGGCAGTGATTGCGATAACACTTCTAGCCATGCATGGAAATTTGC
GGCTTACTTTTGTTGGAATCTTATGCGCTGCATTAACCATTGGCATGTAT
GCATCTCCTCTAGCAGTCATGACAACGGTGATAAGGACAAAGAGTGTGAA
GTACATGCCATTTTTGCTCTCATTTTTCCTATTTCTCAATGCCGGCGTAT
GGTCAGTTTATTCAGTGCTTGTGAAAGACATCTACATCGGAGTTTTTACA
TTAATCAAAACAATTTCAGGTGCCAAATGCCGTAGGGTTCGTCTTGGGTG
CAGCTCAGTTGATTCTCTACCT
back to top