FC925867

Overview
NameFC925867
Unique NameFC925867
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length417
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC925867 vs. ExPASy Swiss-Prot
Match: SUCA_ORYSJ (Probable succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Oryza sativa subsp. japonica GN=Os07g0577700 PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 4.255e-54
Identity = 58/67 (86.57%), Postives = 62/67 (92.54%), Query Frame = 1 
Query:  217 VRVKAALNNQSKTRLVGPNCPGVIKPGECKIGIMPRYIHKPGRIGNVSRSGTLTYEAVFQNTAVCLG 417
            V+VKAALN QSKTRL+GPNCPG+IKPGECKIGIMP YIHKPGR+G VSRSGTLTYEAVFQ TAV LG
Sbjct:  140 VKVKAALNKQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTAVGLG 206

HSP 2 Score: 108.612 bits (270), Expect = 4.255e-54
Identity = 54/72 (75.00%), Postives = 54/72 (75.00%), Query Frame = 2 
Query:    2 GVTPKKGGTEHLGLPVFNSVAEAKAETKANASAIYVPPPFXXXXXXXXXXXXXXXVVCITEGIPQHDMVNTK 217
            GVTPKKGGTEHLGLPVFNSVAEAKAETKANAS IYVPPPF               VVCITEGIPQHDMV  K
Sbjct:   72 GVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVKVK 143
[Close]
BLAST of FC925867 vs. ExPASy Swiss-Prot
Match: SUCA2_ARATH (Succinyl-CoA ligase [GDP-forming] subunit alpha-2, mitochondrial OS=Arabidopsis thaliana GN=At5g23250 PE=1 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 6.028e-53
Identity = 59/67 (88.06%), Postives = 63/67 (94.03%), Query Frame = 1 
Query:  217 VRVKAALNNQSKTRLVGPNCPGVIKPGECKIGIMPRYIHKPGRIGNVSRSGTLTYEAVFQNTAVCLG 417
            VRVKAALN+QSKTRL+GPNCPG+IKPGECKIGIMP YIHKPG+IG VSRSGTLTYEAVFQ TAV LG
Sbjct:  150 VRVKAALNSQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGKIGIVSRSGTLTYEAVFQTTAVGLG 216

HSP 2 Score: 103.99 bits (258), Expect = 6.028e-53
Identity = 51/72 (70.83%), Postives = 53/72 (73.61%), Query Frame = 2 
Query:    2 GVTPKKGGTEHLGLPVFNSVAEAKAETKANASAIYVPPPFXXXXXXXXXXXXXXXVVCITEGIPQHDMVNTK 217
            GVTPKKGGTEHLGLPVFN+VAEAKAETKANAS IYVP PF               +VCITEGIPQHDMV  K
Sbjct:   82 GVTPKKGGTEHLGLPVFNTVAEAKAETKANASVIYVPAPFAAAAIMEGLAAELDLIVCITEGIPQHDMVRVK 153
[Close]
BLAST of FC925867 vs. ExPASy Swiss-Prot
Match: SUCA1_ARATH (Succinyl-CoA ligase [GDP-forming] subunit alpha-1, mitochondrial OS=Arabidopsis thaliana GN=At5g08300 PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.957e-52
Identity = 58/67 (86.57%), Postives = 62/67 (92.54%), Query Frame = 1 
Query:  217 VRVKAALNNQSKTRLVGPNCPGVIKPGECKIGIMPRYIHKPGRIGNVSRSGTLTYEAVFQNTAVCLG 417
            VRVK ALN+QSKTRL+GPNCPG+IKPGECKIGIMP YIHKPG+IG VSRSGTLTYEAVFQ TAV LG
Sbjct:  155 VRVKHALNSQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGKIGIVSRSGTLTYEAVFQTTAVGLG 221

HSP 2 Score: 103.99 bits (258), Expect = 2.957e-52
Identity = 51/72 (70.83%), Postives = 53/72 (73.61%), Query Frame = 2 
Query:    2 GVTPKKGGTEHLGLPVFNSVAEAKAETKANASAIYVPPPFXXXXXXXXXXXXXXXVVCITEGIPQHDMVNTK 217
            GVTPKKGGTEHLGLPVFNSVAEAKA+TKANAS IYVP PF               +VCITEGIPQHDMV  K
Sbjct:   87 GVTPKKGGTEHLGLPVFNSVAEAKADTKANASVIYVPAPFAAAAIMEGIEAELDLIVCITEGIPQHDMVRVK 158
[Close]
BLAST of FC925867 vs. ExPASy Swiss-Prot
Match: SUCA_DICDI (Succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Dictyostelium discoideum GN=scsA PE=1 SV=3)

HSP 1 Score: 112.464 bits (280), Expect = 6.177e-43
Identity = 53/67 (79.10%), Postives = 59/67 (88.06%), Query Frame = 1 
Query:  217 VRVKAALNNQSKTRLVGPNCPGVIKPGECKIGIMPRYIHKPGRIGNVSRSGTLTYEAVFQNTAVCLG 417
            V+VK  LN Q+KTRL+GPNCPG+IKPGECKIGIMP +IHKPG+IG VSRSGTLTYEAV Q TAV LG
Sbjct:  125 VKVKYLLNKQNKTRLIGPNCPGIIKPGECKIGIMPGHIHKPGKIGIVSRSGTLTYEAVAQTTAVGLG 191

HSP 2 Score: 82.4185 bits (202), Expect = 6.177e-43
Identity = 41/74 (55.41%), Postives = 47/74 (63.51%), Query Frame = 2 
Query:    2 GVTPKKGGTEHLGLPVFNSVAEAKAETKANASAIYVPPPFXXXXXXXXXXXXXXXVVCITEGIPQHDMVNTKFV 223
            GV+P KGG +HL LPVFN+V EAK  T ANA+ IYVPPP                VVCITEGIPQ DMV  K++
Sbjct:   57 GVSPGKGGQKHLDLPVFNTVKEAKEATGANATVIYVPPPHAAAAIKEAIDAEMELVVCITEGIPQQDMVKVKYL 130
[Close]
BLAST of FC925867 vs. ExPASy Swiss-Prot
Match: SUCA_RAT (Succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Rattus norvegicus GN=Suclg1 PE=2 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 6.683e-42
Identity = 51/67 (76.12%), Postives = 54/67 (80.60%), Query Frame = 1 
Query:  217 VRVKAALNNQSKTRLVGPNCPGVIKPGECKIGIMPRYIHKPGRIGNVSRSGTLTYEAVFQNTAVCLG 417
            VRVK  L  Q KTRL+GPNCPG+I PGECKIGIMP +IHK GRIG VSRSGTLTYEAV Q T V LG
Sbjct:  153 VRVKHKLTRQGKTRLIGPNCPGIINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQTTQVGLG 219

HSP 2 Score: 85.8853 bits (211), Expect = 6.683e-42
Identity = 43/72 (59.72%), Postives = 46/72 (63.89%), Query Frame = 2 
Query:    2 GVTPKKGGTEHLGLPVFNSVAEAKAETKANASAIYVPPPFXXXXXXXXXXXXXXXVVCITEGIPQHDMVNTK 217
            G TP KGG +HLGLPVFN+V EAK +T A AS IYVPPPF               VVCITEGIPQ DMV  K
Sbjct:   85 GTTPGKGGKKHLGLPVFNTVKEAKEKTGATASVIYVPPPFAAAAINEAIDAEIPLVVCITEGIPQQDMVRVK 156
[Close]
BLAST of FC925867 vs. ExPASy Swiss-Prot
Match: SUCA_PIG (Succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Sus scrofa GN=SUCLG1 PE=1 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 1.479e-41
Identity = 52/67 (77.61%), Postives = 54/67 (80.60%), Query Frame = 1 
Query:  217 VRVKAALNNQSKTRLVGPNCPGVIKPGECKIGIMPRYIHKPGRIGNVSRSGTLTYEAVFQNTAVCLG 417
            VRVK  L  Q KTRL+GPNCPGVI PGECKIGIMP +IHK GRIG VSRSGTLTYEAV Q T V LG
Sbjct:  153 VRVKHRLLRQGKTRLIGPNCPGVINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQTTQVGLG 219

HSP 2 Score: 85.5001 bits (210), Expect = 1.479e-41
Identity = 43/72 (59.72%), Postives = 45/72 (62.50%), Query Frame = 2 
Query:    2 GVTPKKGGTEHLGLPVFNSVAEAKAETKANASAIYVPPPFXXXXXXXXXXXXXXXVVCITEGIPQHDMVNTK 217
            G TP KGG  HLGLPVFN+V EAK +T A AS IYVPPPF               VVCITEGIPQ DMV  K
Sbjct:   85 GTTPGKGGKTHLGLPVFNTVKEAKEQTGATASVIYVPPPFAAAAINEAIDAEVPLVVCITEGIPQQDMVRVK 156
[Close]
BLAST of FC925867 vs. ExPASy Swiss-Prot
Match: SUCA_HUMAN (Succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Homo sapiens GN=SUCLG1 PE=1 SV=4)

HSP 1 Score: 104.76 bits (260), Expect = 1.479e-41
Identity = 52/67 (77.61%), Postives = 54/67 (80.60%), Query Frame = 1 
Query:  217 VRVKAALNNQSKTRLVGPNCPGVIKPGECKIGIMPRYIHKPGRIGNVSRSGTLTYEAVFQNTAVCLG 417
            VRVK  L  Q KTRL+GPNCPGVI PGECKIGIMP +IHK GRIG VSRSGTLTYEAV Q T V LG
Sbjct:  153 VRVKHKLLRQEKTRLIGPNCPGVINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQTTQVGLG 219

HSP 2 Score: 85.5001 bits (210), Expect = 1.479e-41
Identity = 43/72 (59.72%), Postives = 45/72 (62.50%), Query Frame = 2 
Query:    2 GVTPKKGGTEHLGLPVFNSVAEAKAETKANASAIYVPPPFXXXXXXXXXXXXXXXVVCITEGIPQHDMVNTK 217
            G TP KGG  HLGLPVFN+V EAK +T A AS IYVPPPF               VVCITEGIPQ DMV  K
Sbjct:   85 GTTPGKGGQTHLGLPVFNTVKEAKEQTGATASVIYVPPPFAAAAINEAIEAEIPLVVCITEGIPQQDMVRVK 156
[Close]
BLAST of FC925867 vs. ExPASy Swiss-Prot
Match: SUCA_BOVIN (Succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Bos taurus GN=SUCLG1 PE=2 SV=3)

HSP 1 Score: 104.76 bits (260), Expect = 1.479e-41
Identity = 52/67 (77.61%), Postives = 54/67 (80.60%), Query Frame = 1 
Query:  217 VRVKAALNNQSKTRLVGPNCPGVIKPGECKIGIMPRYIHKPGRIGNVSRSGTLTYEAVFQNTAVCLG 417
            VRVK  L  Q KTRLVGPNCPGVI PGECKIGIMP +IHK GR+G VSRSGTLTYEAV Q T V LG
Sbjct:  153 VRVKHKLLRQGKTRLVGPNCPGVINPGECKIGIMPGHIHKKGRVGIVSRSGTLTYEAVHQTTQVGLG 219

HSP 2 Score: 85.5001 bits (210), Expect = 1.479e-41
Identity = 43/72 (59.72%), Postives = 45/72 (62.50%), Query Frame = 2 
Query:    2 GVTPKKGGTEHLGLPVFNSVAEAKAETKANASAIYVPPPFXXXXXXXXXXXXXXXVVCITEGIPQHDMVNTK 217
            G TP KGG  HLGLPVFN+V EAK +T A AS IYVPPPF               VVCITEGIPQ DMV  K
Sbjct:   85 GTTPGKGGKTHLGLPVFNTVKEAKEQTGATASVIYVPPPFAVAAIDEAIEAEVSLVVCITEGIPQQDMVRVK 156
[Close]
BLAST of FC925867 vs. ExPASy Swiss-Prot
Match: SUCA_MOUSE (Succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Mus musculus GN=Suclg1 PE=1 SV=4)

HSP 1 Score: 103.605 bits (257), Expect = 2.510e-41
Identity = 51/67 (76.12%), Postives = 53/67 (79.10%), Query Frame = 1 
Query:  217 VRVKAALNNQSKTRLVGPNCPGVIKPGECKIGIMPRYIHKPGRIGNVSRSGTLTYEAVFQNTAVCLG 417
            VRVK  L  Q  TRL+GPNCPGVI PGECKIGIMP +IHK GRIG VSRSGTLTYEAV Q T V LG
Sbjct:  153 VRVKHRLTRQGTTRLIGPNCPGVINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQTTQVGLG 219

HSP 2 Score: 85.8853 bits (211), Expect = 2.510e-41
Identity = 43/72 (59.72%), Postives = 46/72 (63.89%), Query Frame = 2 
Query:    2 GVTPKKGGTEHLGLPVFNSVAEAKAETKANASAIYVPPPFXXXXXXXXXXXXXXXVVCITEGIPQHDMVNTK 217
            G TP KGG +HLGLPVFN+V EAK +T A AS IYVPPPF               VVCITEGIPQ DMV  K
Sbjct:   85 GTTPGKGGQKHLGLPVFNTVKEAKEKTGATASVIYVPPPFAAAAINEAIDAEIPLVVCITEGIPQQDMVRVK 156
[Close]
BLAST of FC925867 vs. ExPASy Swiss-Prot
Match: SUCA_DROME (Succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Drosophila melanogaster GN=Scsalpha PE=2 SV=3)

HSP 1 Score: 99.7525 bits (247), Expect = 2.087e-40
Identity = 49/67 (73.13%), Postives = 56/67 (83.58%), Query Frame = 1 
Query:  217 VRVKAALNNQSKTRLVGPNCPGVIKPGECKIGIMPRYIHKPGRIGNVSRSGTLTYEAVFQNTAVCLG 417
            V+VK AL +QSK+RLVGPNCPG+I P +CKIGIMP +IHK G+IG VSRSGTLTYEAV Q T V LG
Sbjct:  135 VKVKHALISQSKSRLVGPNCPGIIAPEQCKIGIMPGHIHKRGKIGVVSRSGTLTYEAVHQTTEVGLG 201

HSP 2 Score: 86.6557 bits (213), Expect = 2.087e-40
Identity = 41/72 (56.94%), Postives = 48/72 (66.67%), Query Frame = 2 
Query:    2 GVTPKKGGTEHLGLPVFNSVAEAKAETKANASAIYVPPPFXXXXXXXXXXXXXXXVVCITEGIPQHDMVNTK 217
            G++PKKGGT+HLGLPVF SVAEAK  T  +A+ IYVPPP                +VCITEG+PQHDMV  K
Sbjct:   67 GISPKKGGTQHLGLPVFASVAEAKKATDPHATVIYVPPPGAAAAIIEALEAEIPLIVCITEGVPQHDMVKVK 138
The following BLAST results are available for this feature:
BLAST of FC925867 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
SUCA_ORYSJ4.255e-5486.57Probable succinyl-CoA ligase [GDP-forming] subunit... [more]
SUCA2_ARATH6.028e-5388.06Succinyl-CoA ligase [GDP-forming] subunit alpha-2,... [more]
SUCA1_ARATH2.957e-5286.57Succinyl-CoA ligase [GDP-forming] subunit alpha-1,... [more]
SUCA_DICDI6.177e-4379.10Succinyl-CoA ligase [GDP-forming] subunit alpha, m... [more]
SUCA_RAT6.683e-4276.12Succinyl-CoA ligase [GDP-forming] subunit alpha, m... [more]
SUCA_PIG1.479e-4177.61Succinyl-CoA ligase [GDP-forming] subunit alpha, m... [more]
SUCA_HUMAN1.479e-4177.61Succinyl-CoA ligase [GDP-forming] subunit alpha, m... [more]
SUCA_BOVIN1.479e-4177.61Succinyl-CoA ligase [GDP-forming] subunit alpha, m... [more]
SUCA_MOUSE2.510e-4176.12Succinyl-CoA ligase [GDP-forming] subunit alpha, m... [more]
SUCA_DROME2.087e-4073.13Succinyl-CoA ligase [GDP-forming] subunit alpha, m... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP3YP22FM1 TF Citrus clementina cDNA clone KN0AAP3YP22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925867 ID=FC925867; Name=FC925867; organism=Citrus clementina; type=EST; length=417bp
TGGAGTGACACCGAAGAAGGGTGGCACTGAACATTTGGGGCTTCCTGTTT
TCAACTCAGTTGCAGAAGCAAAGGCTGAAACCAAGGCTAATGCTTCTGCG
ATTTATGTTCCTCCACCTTTCGCTGCTGCTGCTATTCTTGAGGCCATGGA
AGCTGAATTGGATCTTGTCGTGTGTATCACTGAAGGAATCCCCCAACACG
ATATGGTTAACACAAAGTTCGTGTGAAGGCTGCTCTAAACAACCAATCAA
AAACCAGGCTTGTCGGTCCTAATTGCCCTGGTGTCATCAAACCTGGAGAG
TGCAAAATTGGAATTATGCCCCGCTACATCCACAAACCTGGCAGGATTGG
AAATGTTTCTAGATCTGGCACCCTTACATATGAAGCGGTTTTTCAAAACA
CTGCAGTTTGTCTAGGG
back to top