FC925868

Overview
NameFC925868
Unique NameFC925868
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length798
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC925868 vs. ExPASy Swiss-Prot
Match: LEC2_CLALU (Agglutinin-2 OS=Cladrastis lutea PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.469e-12
Identity = 74/246 (30.08%), Postives = 108/246 (43.90%), Query Frame = 3 
Query:   84 ISFSFPSFAKDSCDNKTLICYG--AIESSG-ALSITPGPPPNLPIR-KVGRVLYGKPLSLQRSFID------TTITIKISRHQNYTDRAGDGMTFIFASDKNGPSAKGVGEYLGLQSSPGDKFPPL----AVELDTCLNKNLXXXXXXXXXXXXXXXESNPVNSLLDV--DLKSGRAIQVRIYYNPDFGQLSVYAAYSGETLVK--VVEKPINLSDIIPTPVYVGFTAATGDFLESPEVINWTFNS 767
            +SF+F +F  D  D   LI  G   I S G +L +T       P+R  VGR LY  PL L  S  +      TT T  +S   + T+  GDG+ F  A  +        G  LGL S        L    AVE DT +N N                + N + S   V    ++G     +I YN D  +LSV ++Y      +   V   ++L   +P  V VGF+ +TG ++++  +++WTFNS
Sbjct:   39 LSFTFDNFRPDQRD---LILQGDAKISSGGDSLQLTKTDTSGKPVRGSVGRALYYTPLHLWDSSTNRLASFQTTFTFVLS---SPTNNPGDGIAFFIAPPETTIPPGSSGGLLGLFSPDNALNNSLNQIVAVEFDTFVNNN------WDPSHRHIGIDVNTIKSSATVRWQRENGSLATAQISYNSDTKKLSVVSSYPNTQANEDYTVSYDVDLKTELPEWVRVGFSGSTGGYVQNHNILSWTFNS 272
The following BLAST results are available for this feature:
BLAST of FC925868 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
LEC2_CLALU9.469e-1230.08Agglutinin-2 OS=Cladrastis lutea PE=1 SV=1[more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAP3YP24FM1 TF Citrus clementina cDNA clone KN0AAP3YP24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925868 ID=FC925868; Name=FC925868; organism=Citrus clementina; type=EST; length=798bp
CAGAACAAAAACTGATTTTCCTACTACTCCTCTCCGTTTTTCTTCGCGGA
GCTTCTTCATCAATCCTTTCCGAAGACACACCTATTAGCTTCTCATTTCC
CTCATTCGCCAAAGACAGTTGTGACAATAAGACCCTCATTTGCTACGGAG
CGATTGAAAGTTCCGGCGCCTTAAGCATCACACCAGGCCCTCCACCAAAC
CTGCCGATCAGAAAGGTTGGACGGGTTTTATACGGCAAGCCTCTGAGTTT
ACAGCGATCTTTTATTGATACCACCATCACCATTAAGATCTCACGCCATC
AGAATTACACTGATCGTGCCGGAGATGGCATGACGTTCATTTTTGCAAGC
GATAAAAACGGTCCATCAGCAAAGGGCGTCGGCGAATATCTTGGACTGCA
GTCTTCACCAGGCGATAAATTTCCTCCATTAGCCGTGGAGCTGGACACAT
GCCTGAACAAGAACCTGAATGATCCAGATGATAACCATATTGGCATCGAC
ATAAACGGAATCGAATCAAATCCAGTTAATAGTCTGCTTGACGTTGATCT
CAAAAGTGGACGAGCAATCCAGGTTCGAATTTATTACAATCCAGACTTTG
GACAACTCTCTGTTTATGCGGCATATTCGGGGGAAACACTTGTGAAGGTG
GTTGAAAAACCCATTAACCTGTCAGATATAATTCCAACGCCCGTCTATGT
TGGATTCACAGCAGCTACGGGGGACTTTTTAGAAAGCCCTGAGGTTATAA
ATTGGACCTTCAACTCGTTCCCAGTGCCGCCTTTCTCTCAGGAGAAAA
back to top