FC925968

Overview
NameFC925968
Unique NameFC925968
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length499
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC925968 vs. ExPASy Swiss-Prot
Match: GDIA_RAT (Rab GDP dissociation inhibitor alpha OS=Rattus norvegicus GN=Gdi1 PE=1 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 3.320e-45
Identity = 83/152 (54.61%), Postives = 113/152 (74.34%), Query Frame = 3 
Query:   42 EEGKVVRVPSEGETAMCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFLSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDHCFISTSYDAPTHFES 497
            E GKVV V SEGE A CK+++CDPSY+P++VRK G+V R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+   SY+HNVA +GK+IA  ST  ET  P+ E++P ++LL P+D+ F  I D YEP+++ S    F S SYDA THFE+
Sbjct:  261 ENGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETAEPEKEVEPALELLEPIDQKFVAISDLYEPIDDGSESQVFCSCSYDATTHFET 412
[Close]
BLAST of FC925968 vs. ExPASy Swiss-Prot
Match: GDIA_CANFA (Rab GDP dissociation inhibitor alpha OS=Canis familiaris GN=GDI1 PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 3.320e-45
Identity = 83/152 (54.61%), Postives = 113/152 (74.34%), Query Frame = 3 
Query:   42 EEGKVVRVPSEGETAMCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFLSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDHCFISTSYDAPTHFES 497
            E GKVV V SEGE A CK+++CDPSY+P++VRK G+V R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+   SY+HNVA +GK+IA  ST  ET  P+ E++P ++LL P+D+ F  I D YEP+++ S    F S SYDA THFE+
Sbjct:  261 ENGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETAEPEKEVEPALELLEPIDQKFVAISDLYEPIDDGSESQVFCSCSYDATTHFET 412
[Close]
BLAST of FC925968 vs. ExPASy Swiss-Prot
Match: GDIA_BOVIN (Rab GDP dissociation inhibitor alpha OS=Bos taurus GN=GDI1 PE=1 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 4.336e-45
Identity = 83/152 (54.61%), Postives = 113/152 (74.34%), Query Frame = 3 
Query:   42 EEGKVVRVPSEGETAMCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFLSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDHCFISTSYDAPTHFES 497
            E GKVV V SEGE A CK+++CDPSY+P++VRK G+V R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+   SY+HNVA +GK+IA  ST  ET  P+ E++P ++LL P+D+ F  I D YEP+++ S    F S SYDA THFE+
Sbjct:  261 ENGKVVGVKSEGEVARCKQLICDPSYVPDRVRKAGQVIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETTDPEKEVEPALELLEPIDQKFVAISDLYEPIDDGSESQVFCSCSYDATTHFET 412
[Close]
BLAST of FC925968 vs. ExPASy Swiss-Prot
Match: GDIA_MOUSE (Rab GDP dissociation inhibitor alpha OS=Mus musculus GN=Gdi1 PE=1 SV=3)

HSP 1 Score: 179.104 bits (453), Expect = 9.659e-45
Identity = 82/152 (53.95%), Postives = 113/152 (74.34%), Query Frame = 3 
Query:   42 EEGKVVRVPSEGETAMCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFLSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDHCFISTSYDAPTHFES 497
            E GKVV V SEGE A CK+++CDPSY+P++V+K G+V R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+   SY+HNVA +GK+IA  ST  ET  P+ E++P ++LL P+D+ F  I D YEP+++ S    F S SYDA THFE+
Sbjct:  261 ENGKVVGVKSEGEVARCKQLICDPSYIPDRVQKAGQVIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETAEPEKEVEPALELLEPIDQKFVAISDLYEPIDDGSESQVFCSCSYDATTHFET 412
[Close]
BLAST of FC925968 vs. ExPASy Swiss-Prot
Match: GDIA_PONPY (Rab GDP dissociation inhibitor alpha OS=Pongo pygmaeus GN=GDI1 PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 1.262e-44
Identity = 82/152 (53.95%), Postives = 112/152 (73.68%), Query Frame = 3 
Query:   42 EEGKVVRVPSEGETAMCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFLSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDHCFISTSYDAPTHFES 497
            E GKVV V SEGE A CK+++CDPSY+P++VRK G+V R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+   SY+HNVA +GK+IA  ST  ET  P+ E++P ++LL P+D+ F  I D YEP+++      F S SYDA THFE+
Sbjct:  261 ENGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETTDPEKEVEPALELLEPIDQKFVAISDLYEPIDDGCESQVFCSCSYDATTHFET 412
[Close]
BLAST of FC925968 vs. ExPASy Swiss-Prot
Match: GDIA_PANTR (Rab GDP dissociation inhibitor alpha OS=Pan troglodytes GN=GDI1 PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 1.262e-44
Identity = 82/152 (53.95%), Postives = 112/152 (73.68%), Query Frame = 3 
Query:   42 EEGKVVRVPSEGETAMCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFLSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDHCFISTSYDAPTHFES 497
            E GKVV V SEGE A CK+++CDPSY+P++VRK G+V R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+   SY+HNVA +GK+IA  ST  ET  P+ E++P ++LL P+D+ F  I D YEP+++      F S SYDA THFE+
Sbjct:  261 ENGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETTDPEKEVEPALELLEPIDQKFVAISDLYEPIDDGCESQVFCSCSYDATTHFET 412
[Close]
BLAST of FC925968 vs. ExPASy Swiss-Prot
Match: GDIA_MACFA (Rab GDP dissociation inhibitor alpha OS=Macaca fascicularis GN=GDI1 PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 1.262e-44
Identity = 82/152 (53.95%), Postives = 112/152 (73.68%), Query Frame = 3 
Query:   42 EEGKVVRVPSEGETAMCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFLSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDHCFISTSYDAPTHFES 497
            E GKVV V SEGE A CK+++CDPSY+P++VRK G+V R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+   SY+HNVA +GK+IA  ST  ET  P+ E++P ++LL P+D+ F  I D YEP+++      F S SYDA THFE+
Sbjct:  261 ENGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETTDPEKEVEPALELLEPIDQKFVAISDLYEPIDDGCESQVFCSCSYDATTHFET 412
[Close]
BLAST of FC925968 vs. ExPASy Swiss-Prot
Match: GDIA_HUMAN (Rab GDP dissociation inhibitor alpha OS=Homo sapiens GN=GDI1 PE=1 SV=2)

HSP 1 Score: 178.718 bits (452), Expect = 1.262e-44
Identity = 82/152 (53.95%), Postives = 112/152 (73.68%), Query Frame = 3 
Query:   42 EEGKVVRVPSEGETAMCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFLSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDHCFISTSYDAPTHFES 497
            E GKVV V SEGE A CK+++CDPSY+P++VRK G+V R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+   SY+HNVA +GK+IA  ST  ET  P+ E++P ++LL P+D+ F  I D YEP+++      F S SYDA THFE+
Sbjct:  261 ENGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETTDPEKEVEPALELLEPIDQKFVAISDLYEPIDDGCESQVFCSCSYDATTHFET 412
[Close]
BLAST of FC925968 vs. ExPASy Swiss-Prot
Match: GDIB_RAT (Rab GDP dissociation inhibitor beta OS=Rattus norvegicus GN=Gdi2 PE=1 SV=2)

HSP 1 Score: 166.392 bits (420), Expect = 6.479e-41
Identity = 76/152 (50.00%), Postives = 111/152 (73.03%), Query Frame = 3 
Query:   42 EEGKVVRVPSEGETAMCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFLSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDHCFISTSYDAPTHFES 497
            + GKVV V SEGE A CK+++CDPSY+ ++V KVG+V R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+   S++HNVA +GK+IA +ST  ET  P+ E++P ++LL P+++ F  I D + P +  +    FIS +YDA THFE+
Sbjct:  261 QNGKVVGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRVICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISFAHNVAAQGKYIAIVSTTVETKEPEKEIRPALELLEPIEQKFVSISDLFVPKDLGTDSQIFISRAYDATTHFET 412
[Close]
BLAST of FC925968 vs. ExPASy Swiss-Prot
Match: GDIB_MOUSE (Rab GDP dissociation inhibitor beta OS=Mus musculus GN=Gdi2 PE=1 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 6.479e-41
Identity = 76/152 (50.00%), Postives = 111/152 (73.03%), Query Frame = 3 
Query:   42 EEGKVVRVPSEGETAMCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFLSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDHCFISTSYDAPTHFES 497
            + GKVV V SEGE A CK+++CDPSY+ ++V KVG+V R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+   S++HNVA +GK+IA +ST  ET  P+ E++P ++LL P+++ F  I D + P +  +    FIS +YDA THFE+
Sbjct:  261 QNGKVVGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRVICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISFAHNVAAQGKYIAIVSTTVETKEPEKEIRPALELLEPIEQKFVSISDLFVPKDLGTDSQIFISRAYDATTHFET 412
The following BLAST results are available for this feature:
BLAST of FC925968 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
GDIA_RAT3.320e-4554.61Rab GDP dissociation inhibitor alpha OS=Rattus nor... [more]
GDIA_CANFA3.320e-4554.61Rab GDP dissociation inhibitor alpha OS=Canis fami... [more]
GDIA_BOVIN4.336e-4554.61Rab GDP dissociation inhibitor alpha OS=Bos taurus... [more]
GDIA_MOUSE9.659e-4553.95Rab GDP dissociation inhibitor alpha OS=Mus muscul... [more]
GDIA_PONPY1.262e-4453.95Rab GDP dissociation inhibitor alpha OS=Pongo pygm... [more]
GDIA_PANTR1.262e-4453.95Rab GDP dissociation inhibitor alpha OS=Pan troglo... [more]
GDIA_MACFA1.262e-4453.95Rab GDP dissociation inhibitor alpha OS=Macaca fas... [more]
GDIA_HUMAN1.262e-4453.95Rab GDP dissociation inhibitor alpha OS=Homo sapie... [more]
GDIB_RAT6.479e-4150.00Rab GDP dissociation inhibitor beta OS=Rattus norv... [more]
GDIB_MOUSE6.479e-4150.00Rab GDP dissociation inhibitor beta OS=Mus musculu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YO06FM1 TF Citrus clementina cDNA clone KN0AAP11YO06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925968 ID=FC925968; Name=FC925968; organism=Citrus clementina; type=EST; length=499bp
CGTATATGTTGCCTTAACCTGAGTGCAAGGTAGAGTTTGATGAAGAAGGT
AAAGTAGTCCGTGTCCCGTCCGAAGGGGAAACTGCCATGTGCAAGAAAGT
TGTTTGTGATCCTTCCTATTTGCCCAACAAGGTGAGGAAGGTTGGCAGGG
TTGCTAGGGCAATCGCTATTATGAGCCACCCAATCCCAAACACCAATGAT
TCCCATTCAGTGCAGGTTATCCTTCCGCAAAAACAGTTGGGTCGTAGATC
AGACATGTACCTCTTCTGTTGTTCCTACTCCCACAATGTTGCCCCAAAGG
GCAAATTCATTGCATTCCTATCGACTGAGGCAGAGACTGATCATCCACAG
ACTGAACTTAAGCCTGGAATTGATCTTTTGGGTCCCGTCGATGAAATATT
CTATGATATATATGACAGATATGAACCAGTTAATGAACCTTCTTTGGACC
ATTGCTTTATCTCCACGAGCTATGATGCCCCAACACACTTTGAGTCAAC
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